Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1000 ATGCTAACAGACCGGAATAGATCTTCCGATGCAAAGAGAAGGATGGACGATTTGTCACAACAGTTCGGAAACCGGTTCTGTGCAGACTGTGGATCTCCCGATCCTAAATGGGTGTCTCTGAGTCTTGGAGTATTCATCTGTATCAAGTGTTCCGGAGTACATAGAAACTTAGGAGTCCATATATCCAAGGTTCTTTCAGTGAATCTAGATGGGTTGAATGATGAACAAGTCAACATCTTTGCACGTATGGGTGGAAACACAATCGTGAATAAGAAATACGAAGCCTGTTTGCCAGATGATCTTGAAAAGCCAGGACCAAATTCCTCTATAGACGAGCGCTTTGATTTCATAAGGAGAAAGTATGAGATGCTCGAGTTTTTAAAACTTGACAATCCAATCACTTTAGGGTGTCCTTCATCTCAAAAGAGGAGTTGTTCATTCTCCCAGAGCAACTCTTTGATGTCTAGCTCTGGTCCGGATAAAAGAGAACTCGAAAAAGTAGCTACCATACATCGTATTGGAAATGCGCTTCGTCACAACTGGGGAAGAAAAGATTCCGAGTACAAGAGTTCTAAGAAGACAACCTCATTGCTAGTGAGCAACGCCCCGGCAGGTATGGTTGAATTTATTGGGTTAATTAAGGTCAATGTTGTCAAAGGCACCAACCTAGCCATCCGGGATGTTATATCGAGCGACCCTTACGTGATTATCTCATTGGGTAACCAGTCGGTCAAGACCCGGGTTATAAGGAGCAGCCTGAACCCGGTCTGGAATGAGAGACTGATGCTATCTATTCCAGATAACATTCCCCCTCTTAAAGTGCTAGTGTACGACAAGGACATGTTCAAGAGTGATGATTTCATGGGAGATGCCGAAATCGATATCCAACCATTGGTTATTTCAGCCAAAGCTTACGAGAACTCGATCGTCAGCGGACCAATGCAGCTCGGGAAATGGGTAGCAAGCAGGGATAACACATTGGTTAAAGACAGTGTGATTAACCTTGTTGATGGGATTGTCAGGCAGGAGATCTCTCTTCGGCTTAACAATGTGGAGAAGGGCGTTCTAGATATTGACTTGGAATGCATTCCTCTTACTCAGTAG 1104 44.02 MLTDRNRSSDAKRRMDDLSQQFGNRFCADCGSPDPKWVSLSLGVFICIKCSGVHRNLGVHISKVLSVNLDGLNDEQVNIFARMGGNTIVNKKYEACLPDDLEKPGPNSSIDERFDFIRRKYEMLEFLKLDNPITLGCPSSQKRSCSFSQSNSLMSSSGPDKRELEKVATIHRIGNALRHNWGRKDSEYKSSKKTTSLLVSNAPAGMVEFIGLIKVNVVKGTNLAIRDVISSDPYVIISLGNQSVKTRVIRSSLNPVWNERLMLSIPDNIPPLKVLVYDKDMFKSDDFMGDAEIDIQPLVISAKAYENSIVSGPMQLGKWVASRDNTLVKDSVINLVDGIVRQEISLRLNNVEKGVLDIDLECIPLTQ 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4320413 4323245 + Conep05aG0102700.1 Cone5ag1000 438018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1000 367 SMART C2_3c 212 307 IPR000008 -
Cone5ag1000 367 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 209 367 - -
Cone5ag1000 367 Gene3D Arf GTPase activating protein 2 132 IPR038508 -
Cone5ag1000 367 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 126 IPR001164 GO:0005096(InterPro)
Cone5ag1000 367 Pfam Putative GTPase activating protein for Arf 13 127 IPR001164 GO:0005096(InterPro)
Cone5ag1000 367 CDD ArfGap 15 121 - -
Cone5ag1000 367 Gene3D C2 domain 210 353 IPR035892 -
Cone5ag1000 367 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 208 303 IPR035892 -
Cone5ag1000 367 FunFam stromal membrane-associated protein 1 isoform X1 2 131 - -
Cone5ag1000 367 CDD C2_ArfGAP 210 354 - -
Cone5ag1000 367 SMART arf_gap_3 12 134 IPR001164 GO:0005096(InterPro)
Cone5ag1000 367 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096(InterPro)
Cone5ag1000 367 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096(InterPro)
Cone5ag1000 367 PRINTS HIV Rev interacting protein signature 64 85 IPR001164 GO:0005096(InterPro)
Cone5ag1000 367 ProSiteProfiles C2 domain profile. 193 309 IPR000008 -
Cone5ag1000 367 Pfam C2 domain 212 299 IPR000008 -
Cone5ag1000 367 SUPERFAMILY ArfGap/RecO-like zinc finger 12 127 IPR037278 -
Cone5ag1000 367 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 5 367 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1492 Cone-Chr1:57105587 Cone5ag1000 Cone-Chr5:4320413 1.00E-147 dispersed
Cone5ag1000 Cone-Chr5:4320413 Cone5ag1543 Cone-Chr5:10615499 4.49E-105 dispersed
Cone5ag1000 Cone-Chr5:4320413 Cone5ag0481 Cone-Chr5:2024642 6.06E-154 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1000 K12486 - rcu:8270893 472.626