Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1009 ATGACAAGACATAAATTGAAACTTGCATACATCACGACTGATTCATCAAGAAAGGCAACATTCAAGAAAAGGAAGAAGGGTCTATTGAAAAAGGTTAGTGAACTAAGCACTCTTTGTGGGATTGACGTTTGTGCTATTATTTACAGTCCGTACGATTCTCAACCGGAAGTATGGCCGTCTCCACTGGGAGCACATCGCATTATCACAGAGTTCAAGAAGATGCCGGAAATGGAGCAGAGCAAGAAGATGATGAATCAGGAGATTTTTCTGAGGCAGAGGATCAGCAAGGGTAGTGAGCAGCTCAGGAAACAGAAGAAGGAGAATCGCGAGATGGAGATGAGCAGAGTGATGTTCCGGTGCTTGATCAGTGACGGGTTTCAGGGTCTGAACATGTTCGATTTGAAGGATTTGATTTGGCTGATTGATCAGTGCTTGAAGGATATTAAGAGGAAGATGGAAGCTGGGAATAAAGAGGTAAGGACTAATAGTAATACTAATAATAGTATTGATACCAATAATAATGATAAGGATAAGAAGAAAGATGTTAATGGTCGAGGGCAAGTCGGGAAAAGCTCTGTTGCAGCAGTACAAAATGTGGAGCAGCAGGAAGTGAATCATATGTTGCAGAAGCAGCCATGGCTGATTGAGTTTTTGAACTCTTCATCATCATCACAAGATCATAATATAAGATTCGGTGCTTATGATGATATTCTGCTTGGAGAAGGAAGCCATAACTTTTTATGGTCTAGTGCCTTCAATTCTCCTTGA 768 41.02 MTRHKLKLAYITTDSSRKATFKKRKKGLLKKVSELSTLCGIDVCAIIYSPYDSQPEVWPSPLGAHRIITEFKKMPEMEQSKKMMNQEIFLRQRISKGSEQLRKQKKENREMEMSRVMFRCLISDGFQGLNMFDLKDLIWLIDQCLKDIKRKMEAGNKEVRTNSNTNNSIDTNNNDKDKKKDVNGRGQVGKSSVAAVQNVEQQEVNHMLQKQPWLIEFLNSSSSSQDHNIRFGAYDDILLGEGSHNFLWSSAFNSP 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4365469 4366236 - Conep05aG0103600.1 Cone5ag1009 438027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1009 255 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone5ag1009 255 MobiDBLite consensus disorder prediction 156 192 - -
Cone5ag1009 255 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 208 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone5ag1009 255 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Cone5ag1009 255 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone5ag1009 255 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone5ag1009 255 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Cone5ag1009 255 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone5ag1009 255 Gene3D - 14 97 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone5ag1009 255 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone5ag1009 255 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone5ag1009 255 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag1009 Cone-Chr5:4365469 Cone5ag1602 Cone-Chr5:11253341 3.71E-08 dispersed
Cone10ag0121 Cone-Chr10:622117 Cone5ag1009 Cone-Chr5:4365469 4.86E-24 transposed
Cone17ag0808 Cone-Chr17:6389272 Cone5ag1009 Cone-Chr5:4365469 1.37E-54 transposed
Cone6ag1298 Cone-Chr6:10420604 Cone5ag1009 Cone-Chr5:4365469 4.64E-09 transposed
Cone1ag0816 Cone-Chr1:54044189 Cone5ag1009 Cone-Chr5:4365469 7.84E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46166 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1009 - - - 0.0