Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone5ag1009 | ATGACAAGACATAAATTGAAACTTGCATACATCACGACTGATTCATCAAGAAAGGCAACATTCAAGAAAAGGAAGAAGGGTCTATTGAAAAAGGTTAGTGAACTAAGCACTCTTTGTGGGATTGACGTTTGTGCTATTATTTACAGTCCGTACGATTCTCAACCGGAAGTATGGCCGTCTCCACTGGGAGCACATCGCATTATCACAGAGTTCAAGAAGATGCCGGAAATGGAGCAGAGCAAGAAGATGATGAATCAGGAGATTTTTCTGAGGCAGAGGATCAGCAAGGGTAGTGAGCAGCTCAGGAAACAGAAGAAGGAGAATCGCGAGATGGAGATGAGCAGAGTGATGTTCCGGTGCTTGATCAGTGACGGGTTTCAGGGTCTGAACATGTTCGATTTGAAGGATTTGATTTGGCTGATTGATCAGTGCTTGAAGGATATTAAGAGGAAGATGGAAGCTGGGAATAAAGAGGTAAGGACTAATAGTAATACTAATAATAGTATTGATACCAATAATAATGATAAGGATAAGAAGAAAGATGTTAATGGTCGAGGGCAAGTCGGGAAAAGCTCTGTTGCAGCAGTACAAAATGTGGAGCAGCAGGAAGTGAATCATATGTTGCAGAAGCAGCCATGGCTGATTGAGTTTTTGAACTCTTCATCATCATCACAAGATCATAATATAAGATTCGGTGCTTATGATGATATTCTGCTTGGAGAAGGAAGCCATAACTTTTTATGGTCTAGTGCCTTCAATTCTCCTTGA | 768 | 41.02 | MTRHKLKLAYITTDSSRKATFKKRKKGLLKKVSELSTLCGIDVCAIIYSPYDSQPEVWPSPLGAHRIITEFKKMPEMEQSKKMMNQEIFLRQRISKGSEQLRKQKKENREMEMSRVMFRCLISDGFQGLNMFDLKDLIWLIDQCLKDIKRKMEAGNKEVRTNSNTNNSIDTNNNDKDKKKDVNGRGQVGKSSVAAVQNVEQQEVNHMLQKQPWLIEFLNSSSSSQDHNIRFGAYDDILLGEGSHNFLWSSAFNSP | 255 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 4365469 | 4366236 | - | Conep05aG0103600.1 | Cone5ag1009 | 438027 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone5ag1009 | 255 | ProSiteProfiles | MADS-box domain profile. | 1 | 49 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone5ag1009 | 255 | MobiDBLite | consensus disorder prediction | 156 | 192 | - | - | |
Cone5ag1009 | 255 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 208 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cone5ag1009 | 255 | CDD | MADS_SRF_like | 2 | 85 | IPR033897 | GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro) | |
Cone5ag1009 | 255 | SUPERFAMILY | SRF-like | 2 | 95 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone5ag1009 | 255 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone5ag1009 | 255 | FunFam | agamous-like MADS-box protein AGL80 | 13 | 97 | - | - | |
Cone5ag1009 | 255 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 51 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone5ag1009 | 255 | Gene3D | - | 14 | 97 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone5ag1009 | 255 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone5ag1009 | 255 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone5ag1009 | 255 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone5ag1009 | Cone-Chr5:4365469 | Cone5ag1602 | Cone-Chr5:11253341 | 3.71E-08 | dispersed | |
Cone10ag0121 | Cone-Chr10:622117 | Cone5ag1009 | Cone-Chr5:4365469 | 4.86E-24 | transposed | |
Cone17ag0808 | Cone-Chr17:6389272 | Cone5ag1009 | Cone-Chr5:4365469 | 1.37E-54 | transposed | |
Cone6ag1298 | Cone-Chr6:10420604 | Cone5ag1009 | Cone-Chr5:4365469 | 4.64E-09 | transposed | |
Cone1ag0816 | Cone-Chr1:54044189 | Cone5ag1009 | Cone-Chr5:4365469 | 7.84E-88 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46166 | None | None | None | None | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone5ag1009 | - | - | - | 0.0 |