Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1009 ATGACAAGACATAAATTGAAACTTGCATACATCACGACTGATTCATCAAGAAAGGCAACATTCAAGAAAAGGAAGAAGGGTCTATTGAAAAAGGTTAGTGAACTAAGCACTCTTTGTGGGATTGACGTTTGTGCTATTATTTACAGTCCGTACGATTCTCAACCGGAAGTATGGCCGTCTCCACTGGGAGCACATCGCATTATCACAGAGTTCAAGAAGATGCCGGAAATGGAGCAGAGCAAGAAGATGATGAATCAGGAGATTTTTCTGAGGCAGAGGATCAGCAAGGGTAGTGAGCAGCTCAGGAAACAGAAGAAGGAGAATCGCGAGATGGAGATGAGCAGAGTGATGTTCCGGTGCTTGATCAGTGACGGGTTTCAGGGTCTGAACATGTTCGATTTGAAGGATTTGATTTGGCTGATTGATCAGTGCTTGAAGGATATTAAGAGGAAGATGGAAGCTGGGAATAAAGAGGTAAGGACTAATAGTAATACTAATAATAGTATTGATACCAATAATAATGATAAGGATAAGAAGAAAGATGTTAATGGTCGAGGGCAAGTCGGGAAAAGCTCTGTTGCAGCAGTACAAAATGTGGAGCAGCAGGAAGTGAATCATATGTTGCAGAAGCAGCCATGGCTGATTGAGTTTTTGAACTCTTCATCATCATCACAAGATCATAATATAAGATTCGGTGCTTATGATGATATTCTGCTTGGAGAAGGAAGCCATAACTTTTTATGGTCTAGTGCCTTCAATTCTCCTTGA 768 41.02 MTRHKLKLAYITTDSSRKATFKKRKKGLLKKVSELSTLCGIDVCAIIYSPYDSQPEVWPSPLGAHRIITEFKKMPEMEQSKKMMNQEIFLRQRISKGSEQLRKQKKENREMEMSRVMFRCLISDGFQGLNMFDLKDLIWLIDQCLKDIKRKMEAGNKEVRTNSNTNNSIDTNNNDKDKKKDVNGRGQVGKSSVAAVQNVEQQEVNHMLQKQPWLIEFLNSSSSSQDHNIRFGAYDDILLGEGSHNFLWSSAFNSP 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4365469 4366236 - Conep05aG0103600.1 Cone5ag1009 438027

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1009 255 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone5ag1009 255 MobiDBLite consensus disorder prediction 156 192 - -
Cone5ag1009 255 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 208 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone5ag1009 255 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Cone5ag1009 255 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone5ag1009 255 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone5ag1009 255 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Cone5ag1009 255 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone5ag1009 255 Gene3D - 14 97 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone5ag1009 255 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone5ag1009 255 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone5ag1009 255 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1009 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag1009 Cone-Chr5:4365469 Cone5ag1602 Cone-Chr5:11253341 3.71E-08 dispersed
Cone10ag0121 Cone-Chr10:622117 Cone5ag1009 Cone-Chr5:4365469 4.86E-24 transposed
Cone17ag0808 Cone-Chr17:6389272 Cone5ag1009 Cone-Chr5:4365469 1.37E-54 transposed
Cone6ag1298 Cone-Chr6:10420604 Cone5ag1009 Cone-Chr5:4365469 4.64E-09 transposed
Cone1ag0816 Cone-Chr1:54044189 Cone5ag1009 Cone-Chr5:4365469 7.84E-88 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone13ag0950 . 2 349 Type I MADS-box Gene Family AT2G03060 51.6 2.9e-87 319.7
Cone10ag1068 . 1 213 Type I MADS-box Gene Family AT5G60440 50.9 2.5e-46 183.3
Cone7ag1577 . 1 173 Type I MADS-box Gene Family AT1G77950 55.1 6.0e-49 191.8
Cone5ag1009 . 1 153 Type I MADS-box Gene Family AT5G48670 63.0 2.6e-49 193.4
Cone17ag0808 . 1 118 Type I MADS-box Gene Family AT5G48670 66.1 4.1e-42 169.5
Cone13ag0950 . 2 349 Type I MADS-box Gene Family AT2G03060 51.6 2.9e-87 319.7
Cone10ag1068 . 1 213 Type I MADS-box Gene Family AT5G60440 50.9 2.5e-46 183.3
Cone7ag1577 . 1 173 Type I MADS-box Gene Family AT1G77950 55.1 6.0e-49 191.8
Cone5ag1009 . 1 153 Type I MADS-box Gene Family AT5G48670 63.0 2.6e-49 193.4
Cone17ag0808 . 1 118 Type I MADS-box Gene Family AT5G48670 66.1 4.1e-42 169.5
Cone13ag0950 . 2 349 Type I MADS-box Gene Family AT2G03060 51.6 2.9e-87 319.7
Cone10ag1068 . 1 213 Type I MADS-box Gene Family AT5G60440 50.9 2.5e-46 183.3
Cone5ag1009 . 1 153 Type I MADS-box Gene Family AT5G48670 63.0 2.6e-49 193.4
Cone17ag0808 . 1 118 Type I MADS-box Gene Family AT5G48670 66.1 4.1e-42 169.5
Cone7ag1577 . 1 173 Type I MADS-box Gene Family AT1G77950 55.1 6.0e-49 191.8
Cone13ag0950 . 2 349 Type I MADS-box Gene Family AT2G03060 51.6 2.9e-87 319.7
Cone10ag1068 . 1 213 Type I MADS-box Gene Family AT5G60440 50.9 2.5e-46 183.3
Cone5ag1009 . 1 153 Type I MADS-box Gene Family AT5G48670 63.0 2.6e-49 193.4
Cone17ag0808 . 1 118 Type I MADS-box Gene Family AT5G48670 66.1 4.1e-42 169.5
Cone7ag1577 . 1 173 Type I MADS-box Gene Family AT1G77950 55.1 6.0e-49 191.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001414 5 4 2 4 3 2 4 2 2 2 2 2 2 2 3 2 2 3 4 2 2 3 2 2 2 2 2 2 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46166 None None None None Cone TF