Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone5ag1023 | ATGTCGCAGAACTCAGGGACCATGCCTTCTTTCAAGTTGATAAAATCATTGCCAGTTGATTACCGATTCATGGGATCATCAACCTCTGATCATTTGGTTACTCCGGAAAATGGTGTTTATGATAATAAAACGGTTGTTGGAGTCGAGAATTATGTTGCCCATGTTGAAGTAAATGAGGATTCCCCATATGGTGATAATATGATGTTGGTTGAAGACAGGCCTGCTATGAGTGATGAAGACTCTGCTTCTGTGGCTTTGCCTTCTCCTTCAATCTCTAGCGCACGCAATGAGCACAGATGGGGTGACACCTCCTCTTATGCAGTGAAGAAGATGATTAATTCTTGGTTTCAACTTCCAAATGGGACTTGGGAGCTGGTTAAAATATTATCAACTTCAGGAATAGAGTCTGTTGTTTCACTTCCTGATGGCAAGGTTTTAAAGGTAAAAACTGAAAGTTTGCTACCAGCAAATCCTGATATCCTAGATGGTGTAGATGATCTGATGCAACTTAGTTATTTAAACGAGCCTTCAGTGCTATACAATCTTCAGTACAGATACAATCAAGATATGATTTATACAAAAGCTGGACCTGTATTGGTTGCTGTCAACCCTTTTAAGAAAGTTCCCTTGTACGGAAATGATTTCATTGAAGCATATAAGCTTAAATCTATGGAGAGTCCGCATGTATATGCCATTACAGATACAGCCATCCGAGAAATGGTCCGAGATGAAGTAAATCAATCTATCATTATAAGTGGTGAAAGTGGAGCGGGAAAAACCGAAACAGCAAAGATAGCAATGCAGTATTTGGCCACCCTTGGTGGTGGAAGTGGGATAGAGTATGAAATATTGAAAACAAATCCGATCTTAGAAGCCTTTGGCAATGCAAAAACATTGAGAAATGACAACTCAAGTCGCTTTGGAAAATTGATTGAAATCCACTTCAGTGAAACAGGAAAAATATCTGGTGCCAATATTCAAACTTTTTTGCTTGAGAAGTCTAGAGTGGTCCAGTGCATGGAGGGTGAAAGGTCATATCATATATTTTACCAGCTCTGTGCTGGAGCTCCATCTGCTCTTAGAGAGATGCTGAATTTGAAGAGTGCAGATGAGTACAAGTATCTGAGGCAGAGTAATTGTTATTCAATTACTGGGGTTGATGATGCTGATCAATTTCGTATAGTCATGGAAGCTCTAGATGTTGTGCATATCAGCAAAGAGGATCAAGAAAGTGTATTTTCTGTGCTTGCTGCTGTGCTGTGGCTGGGAAATGTGTCGTTTGCTGTGATAGACAATGAGAACCATGTTGAAGCATTGGCTGATGAATGTCTATCCTCAGTTGCTAGACTGATTGGATGTAATGTTGAGGAACTTAATCTAGCTTTAACCTCTCGAAAAATGACTGTCAGGAATGAGGATATTGTCCAAAAGCTTACACTACCACAAGCGATAGATGCAAGAGATGCTTTGGCGAAGTATATATATGCTTGTCTATTTGAGTGGCTGGTTGAACAAATCAACAAATCTCTTGCTGTAGGGAAACGGCGTACTGGCAGATCCATCAGCATTCTTGATATCTATGGCTTTGAATCATTTGATAGGAATAGTTTTGAGCAATTCTGCATTAACTATGCAAATGAAAGATTGCAGCAACATTTCAATCGTCATTTATTCAAGCTGGAGCAGGAGGAGTACATCCAAGATGGTATTGACTGGGCAAAAGTAGATTTCGATGATAACCAGGACTGTCTCAGTCTTTTTGAAAAGAAACCTTTGGGATTGCTGTCCCTGCTAGATGAGGAGTCCACTTTCCCAAACGGCACAGATTTAACCTTTGCCAACAAGCTTAAGCAGCATTTGAACTCTAATTCTTGTTTCAGGGGAGAAAGAGGTCAAGGCTTTACTGTTAGTCATTATGCAGGAGAGGTTACATATGACACAACTGGATTTCTGGAGAAAAACAGGGACTTACTGCACCTAGATTCTATTCAACTCCTATCTTCATGCTCATGCCACCTTCCTCAGAAATTTGCTGCTGACATGCTTGATCATTCCAAAAAATCTGTTACTGGACCTTTACATAAATCTGGTGGTGCAGATTCCCAAAAGCTAAGTGTAGCAACTAAATTTAAGGGTCAATTGTTCCAGTTGTTGCAACGTCTAGAGAATACTACACCTCATTTCATACGATGTATCAAGCCAAACAATCTTCAATCTCCTGGGTTATATGAGCAAGAACTTGTACTGCAGCAGCTGAGATGCTGTGGAGTCTTAGAGGTAGTTCGGATATCAAGATCAGGATTTCCTACCAGAATGACTCACCAAAAGTTTGCTAGAAGGTACGGATTTCTACTACTGGAGAGTGTCGCTTCTCAGGATCCATTGAGTGTTTCAGTTGCAATTCTTCACCAATTCAATATAATGCCAGACATGTACCAAGTTGGCTATACAAAATTATTTTTCCGAACTGGACAGATTGGGGTGCTTGAAGATACAAGAAACTGCACCCTTCATGGCATCTTACGTGTTCAAAGCTGCTTCAGGGGGTACCAAGCTCGCTGCCACCTCAAGGAGCTGAGGCGAGGAATTGCAACTCTTCAGTCATTTATACGTGGAGTAAACACGAGAAAGGAGTATGCAATCTTACTTCAGAGACACAGAGCTGCTATTAAAATACAGAAGCAGAGTAAAAGCAGAATTTTAAGAAACCAGTTCAAGGATACTTGTGATGCATCAGTCACAATTCAATCAGTCATACGTGGCTGGTTGGTAAGGAGGTGCTCAGGAAATATAGGATCGCTGATATCTGGGGAAAGAAAGGTAAATGAGTTGGATGAGGTCCTTGTGAAGTCGTCATTCCTTGCAGAATTACAACGCAGAGTTCTTAAGGCTGAGGCTGGTTTGAGAGAAAAAGAAGAAGAGAATGAGATCCTACACCAACGCCTCCAACAGTATGATAACCGTTGGTCAGAATACGAGCTGAAAATGAAGTCAATGGAAGAAGTATGGCAGAAGCAGATGAGATCACTACAATCCAGCCTCTCCATTGCAAAGAAGAGCTTAGCTATTGATGATTCTGCGAGAAATTCTGATGCATCTGTAAATGCAAGTGAAGAAAGAGACTACAGCTGGGAAACAGGAAGTAACAATAATAGAGAGAGCAATGGGATGAGACCAATGAATGCAGGTCTTAGTGTTATAAGCCGATTGGCTGAAGAATTCGAGCAGAGGAGTCAGGTATTTGGCGACGATGCAAAATTCTTAGTAGAGGTTAAGTCTGGTCAGGTTGAAGCAAGTCTTGATCCAGATAAGGAACTCAGAAGATTGAAGCAGATTTTCGAAGGTTGGAAGAAGGAATATGGGGTGAGACTACGGGAAACAAAGGTGATTTTGAACAGGCTTGGCACTGAAAACTCAGGTGATAAGGCGAAAAAGAAATGGTGGGGCAGGTTAAACAGCTCGAGGATTAATTAA | 3474 | 40.99 | MSQNSGTMPSFKLIKSLPVDYRFMGSSTSDHLVTPENGVYDNKTVVGVENYVAHVEVNEDSPYGDNMMLVEDRPAMSDEDSASVALPSPSISSARNEHRWGDTSSYAVKKMINSWFQLPNGTWELVKILSTSGIESVVSLPDGKVLKVKTESLLPANPDILDGVDDLMQLSYLNEPSVLYNLQYRYNQDMIYTKAGPVLVAVNPFKKVPLYGNDFIEAYKLKSMESPHVYAITDTAIREMVRDEVNQSIIISGESGAGKTETAKIAMQYLATLGGGSGIEYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCMEGERSYHIFYQLCAGAPSALREMLNLKSADEYKYLRQSNCYSITGVDDADQFRIVMEALDVVHISKEDQESVFSVLAAVLWLGNVSFAVIDNENHVEALADECLSSVARLIGCNVEELNLALTSRKMTVRNEDIVQKLTLPQAIDARDALAKYIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFDDNQDCLSLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNSCFRGERGQGFTVSHYAGEVTYDTTGFLEKNRDLLHLDSIQLLSSCSCHLPQKFAADMLDHSKKSVTGPLHKSGGADSQKLSVATKFKGQLFQLLQRLENTTPHFIRCIKPNNLQSPGLYEQELVLQQLRCCGVLEVVRISRSGFPTRMTHQKFARRYGFLLLESVASQDPLSVSVAILHQFNIMPDMYQVGYTKLFFRTGQIGVLEDTRNCTLHGILRVQSCFRGYQARCHLKELRRGIATLQSFIRGVNTRKEYAILLQRHRAAIKIQKQSKSRILRNQFKDTCDASVTIQSVIRGWLVRRCSGNIGSLISGERKVNELDEVLVKSSFLAELQRRVLKAEAGLREKEEENEILHQRLQQYDNRWSEYELKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDDSARNSDASVNASEERDYSWETGSNNNRESNGMRPMNAGLSVISRLAEEFEQRSQVFGDDAKFLVEVKSGQVEASLDPDKELRRLKQIFEGWKKEYGVRLRETKVILNRLGTENSGDKAKKKWWGRLNSSRIN | 1157 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 4441363 | 4452600 | + | Conep05aG0105000.1 | Cone5ag1023 | 438041 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone5ag1023 | 1157 | ProSiteProfiles | IQ motif profile. | 885 | 914 | - | - | |
| Cone5ag1023 | 1157 | ProSiteProfiles | IQ motif profile. | 859 | 888 | - | - | |
| Cone5ag1023 | 1157 | PANTHER | MYOSIN | 115 | 1129 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| Cone5ag1023 | 1157 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 109 | 158 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cone5ag1023 | 1157 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 405 | 702 | - | - | |
| Cone5ag1023 | 1157 | Gene3D | - | 767 | 836 | - | - | |
| Cone5ag1023 | 1157 | Gene3D | - | 530 | 724 | - | - | |
| Cone5ag1023 | 1157 | Gene3D | - | 344 | 403 | - | - | |
| Cone5ag1023 | 1157 | PRINTS | Myosin heavy chain signature | 246 | 271 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cone5ag1023 | 1157 | PRINTS | Myosin heavy chain signature | 520 | 548 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cone5ag1023 | 1157 | PRINTS | Myosin heavy chain signature | 573 | 601 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cone5ag1023 | 1157 | PRINTS | Myosin heavy chain signature | 288 | 315 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cone5ag1023 | 1157 | PRINTS | Myosin heavy chain signature | 192 | 211 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cone5ag1023 | 1157 | SMART | iq_5 | 835 | 857 | IPR000048 | GO:0005515(InterPro) | |
| Cone5ag1023 | 1157 | SMART | iq_5 | 884 | 906 | IPR000048 | GO:0005515(InterPro) | |
| Cone5ag1023 | 1157 | SMART | iq_5 | 907 | 929 | IPR000048 | GO:0005515(InterPro) | |
| Cone5ag1023 | 1157 | SMART | iq_5 | 858 | 880 | IPR000048 | GO:0005515(InterPro) | |
| Cone5ag1023 | 1157 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 136 | 882 | IPR027417 | - | |
| Cone5ag1023 | 1157 | MobiDBLite | consensus disorder prediction | 1027 | 1058 | - | - | |
| Cone5ag1023 | 1157 | Pfam | Myosin head (motor domain) | 164 | 822 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cone5ag1023 | 1157 | SMART | MYSc_2a | 156 | 835 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cone5ag1023 | 1157 | FunFam | Unconventional myosin-XIX | 532 | 724 | - | - | |
| Cone5ag1023 | 1157 | Gene3D | Kinesin motor domain | 165 | 763 | IPR036961 | - | |
| Cone5ag1023 | 1157 | ProSiteProfiles | IQ motif profile. | 838 | 865 | - | - | |
| Cone5ag1023 | 1157 | Gene3D | - | 887 | 929 | - | - | |
| Cone5ag1023 | 1157 | Gene3D | - | 839 | 886 | - | - | |
| Cone5ag1023 | 1157 | CDD | MYSc_Myo8 | 176 | 822 | IPR036022 | - | |
| Cone5ag1023 | 1157 | FunFam | Myosin heavy chain | 344 | 400 | - | - | |
| Cone5ag1023 | 1157 | ProSiteProfiles | IQ motif profile. | 910 | 937 | - | - | |
| Cone5ag1023 | 1157 | ProSiteProfiles | Myosin motor domain profile. | 162 | 834 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cone5ag1023 | 1157 | Coils | Coil | 954 | 988 | - | - | |
| Cone5ag1023 | 1157 | Pfam | IQ calmodulin-binding motif | 860 | 879 | IPR000048 | GO:0005515(InterPro) | |
| Cone5ag1023 | 1157 | Pfam | IQ calmodulin-binding motif | 911 | 926 | IPR000048 | GO:0005515(InterPro) | |
| Cone5ag1023 | 1157 | Pfam | IQ calmodulin-binding motif | 840 | 857 | IPR000048 | GO:0005515(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone14ag1087 | Cone-Chr14:9103051 | Cone5ag1023 | Cone-Chr5:4441363 | 0 | dispersed | |
| Cone15ag1098 | Cone-Chr15:9008926 | Cone5ag1023 | Cone-Chr5:4441363 | 0 | dispersed | |
| Cone4ag0805 | Cone-Chr4:5072247 | Cone5ag1023 | Cone-Chr5:4441363 | 1.58E-190 | dispersed | |
| Cone5ag1023 | Cone-Chr5:4441363 | Cone6ag0113 | Cone-Chr6:541407 | 0 | dispersed | |
| Cone1ag0804 | Cone-Chr1:53956245 | Cone5ag1023 | Cone-Chr5:4441363 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone5ag1023 | - | - | - | 0.0 |