Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone5ag1028 | ATGACGGAAAGAGTGGAGGATTACTTGAGGAAAAACTTCCAAGTCGACCCCAAAAGACCGTCGGAAGAAGCTCTCAGACGATGGCGGTCTGCTGTCTCCTTCGTGAAAAACCGTCGGCGACGGTTCAGAATGGTCGCCGATCTAGAAAAACGTGCAGAGGGCCAACAAAAGCGTCGCATTTTCCAGGAAAAGATGCGAATAGCTCTTTACGTGCAGAAGGCGGCATTGCATTTCATTGATGCTGGAAAACGAGGTGCTTACAAGCTCTCCGAAGAAGTAAGAAACGCCGGTTTTGGCATTGAACCCGAAAATTTAGCCTCCATTGTACGATCTCACGACACTAAAGGCTTAGAATACTATGGAGAGGTCGACGGATTAGGAAGAGAGTTATCCGTTTCCCTGAAAGATGGCATTATCTCAAACGAAATTCCCATGAGGCAAAACATCTACGGCATCAACCGTTATGCTGAAAAACCTTCTAGAGGCTTCTGGATGTATGTTTGGGAAGCCCTGCAAGACTTAACCCTTACTATCCTTATGGTTTCTGCTGTGGTTTCTATAGGTGTTGGAGTTGCCACAGAAGGGTGGCCTAAAGGCATGTATGATGGATTGGGAATAATACTAAGTATCTTCTTAGTAGTTCTGGTAACTGCAGTAAGTGATTATAACCAGTCCTTACAATTCAAGGATCTAGACAAGGAGAAGAAGAATATCATGATTCAAGTCACTAGAGACGAATCGAGACAAAAGGTTTCGATTTACGATTTAGTAGTTGGAGATATTGTTCATTTAGGAATAGGAGATCAAGTTCCGGCCGATGGTATTTTCATATCGGGCTATAGCTTACAAATCGATGAGTCGAGCTTGTCAGGTGAGAGTGAGCCGGTCAATGTGACCCAAGAAAGACCATTTCTCCTAGCAGGGACCAAAGTGCAAGACGGGTCCGGTAAAATGCTTGTGACAACTGTCGGAATGAGAACCGAATGGGGAAGGTTAATGGTCACTTTGAGTGAAGGAGGAGATGATGAGACACCACTTCAAGTCAAGCTCAATGGAGTTGCGACTATTATCGGAAAAATTGGTTTGGCTTTTGCCGTAATGACGTTCTTCGTCTTGGTGACGAGGTTTCTTGTGAATAAAGCAATCGCCAATAAGATCACAGAGTGGTCTTCAAGTGATGCATTGACACTTTTGAATTACTTTGCTATTGCTGTTATTATAATTGTGGTAGCAGTTCCGGAAGGATTGCCCCTAGCCGTAACGGTAAGTCTTGCCTTTGCTATGAAGAAATTGATGAAGGATAAGGCTCTTGTAAGACATCTATCTGCTTGCGAGACAATGGGTTCAGCTCATTGTATTTGTACCGACAAAACTGGGACATTGACAACTAATCATATGGTAGTTGAAAAGATATGGATTTGCGAAGAAACTAAGACGGTAAAAGATAATGATGAAGAAGATATATTGAAAGGTTTTGTCACGGAATCGGTTCATGATGTTCTATTGCAGTCGATATGTCAGAACACAAGCTCAGAGGTAGTTAAAACGAAAGATGGGAAGAATACTGTCTTAGGTACTCCAACTGAGACTGCCTTGTTAGAATTCGGGTTACTTTTAGGTGGTGGTTTGGATGAATACAAGGATAAGATAGTTAAAGTCGAACCGTTCAATTCGGTTAGAAAAAAGATGTCAGTTCTTGTATCTCTTCCTAGCGGTGGATTACGAGCATTCTGCAAAGGAGCATCAGAAATAATTCTGTCCATGTGTGGGAAGGTTCTTAATTCGAAAGGCGAACCATTGCCTCTCTCTGAAGAACAGAGAAATAAGATAACGGATATCATAACAGCTTTTGCTTCTGAGGCTTTAAGAACTCTATGTTTGGCTTACAGGGACGTAGAAGATTCTATGAACGGAGATCATATTCCCGAAGATAACTATACACTAATAGCCGTTATAGGAATCAAGGATCCGGTACGGCCAGGAGTAAAGGATGCCGTAAAGACGTGTTTGGCTGCAGGGATCACTGTAAGAATGGTGACCGGTGATAACATTCATACTGCTAAAGCCATAGCTAGAGAGTGTGGCATCTTGACAGAAGACGGTTTAGCAATTGAAGGGCCGGATTTCCGGAATAAAACCCCCACGGAAATGGAGGAGTTGATACCAAAATTACAGGTAATGGCTCGATCTCTGCCTGCAGACAAGCACACCTTAGTAACACAGTTAAGGAACGTGTTCAAAGAAGTCGTAGCAGTTACAGGTGACGGAACAAATGATGCTCCGGCTTTGCACGAGGCAGACATAGGACTTGCTATGGGCATTGTAGGCACAGAGGTTGCGAAAGAGAATGCAGATGTTATAATAATGGATGATAACTTCTCGACCATAGTGAACGTGGCAAGGTGGGGCCGGTCTGTGTACATCAACATTCAGAAGTTTGTGCAGTTCCAGTTGACAGTCAATGTAGTAGCTCTCATGCTCAATTTCATATCGGCCTGTGTTTCCGGATCTGCTCCTCTTACTGCTGTTCAAATGCTTTGGGTGAATCTGATAATGGACACCCTTGGCGCATTAGCTTTGGCTACGGAGCCTCCGAATGACGAGCTAATGAAAGGGCACCCGACTCGGAAAAACAGAAAGTTCATTACAGGGATTATGTGGAGGAACATCATTGGCCAGAGCATATACCAGATTACTGTCTTATTGGTTCTCAAATTTGATGGGAAGAAGCTTCTTAATCTCACCGGCTCAGATGCTGATACTATACTCACTACTTTCATTTTCAACTCCTTTGTGTTCTGTCAGGTGTTCAATGAGATAAACAGCCGTGACATGGAGAAGATAAATGTTTTCCGAGGAATGTTCGATAGTTGGGTTTTCCCTATGGTCTTATTCTTCACCGTAATTTTTCAAGTTCTAATAGTAGAGTTTCTGGGTACGTTTGCATCAACAAAACCGCTGAGCTGTCGACTGTGGTTAGGCAGTGTTTTGATCGGAGCGGTAAGCTTACCAGTAGCCGCCTTGATCAAGTGCATTCCTGCTGGAACAAGCAAGCCTACTTCTGAGCATCACAATGGTTATGAACCTCTGCCTACTGGTCCAGAGTTGGCTTGA | 3114 | 43.48 | MTERVEDYLRKNFQVDPKRPSEEALRRWRSAVSFVKNRRRRFRMVADLEKRAEGQQKRRIFQEKMRIALYVQKAALHFIDAGKRGAYKLSEEVRNAGFGIEPENLASIVRSHDTKGLEYYGEVDGLGRELSVSLKDGIISNEIPMRQNIYGINRYAEKPSRGFWMYVWEALQDLTLTILMVSAVVSIGVGVATEGWPKGMYDGLGIILSIFLVVLVTAVSDYNQSLQFKDLDKEKKNIMIQVTRDESRQKVSIYDLVVGDIVHLGIGDQVPADGIFISGYSLQIDESSLSGESEPVNVTQERPFLLAGTKVQDGSGKMLVTTVGMRTEWGRLMVTLSEGGDDETPLQVKLNGVATIIGKIGLAFAVMTFFVLVTRFLVNKAIANKITEWSSSDALTLLNYFAIAVIIIVVAVPEGLPLAVTVSLAFAMKKLMKDKALVRHLSACETMGSAHCICTDKTGTLTTNHMVVEKIWICEETKTVKDNDEEDILKGFVTESVHDVLLQSICQNTSSEVVKTKDGKNTVLGTPTETALLEFGLLLGGGLDEYKDKIVKVEPFNSVRKKMSVLVSLPSGGLRAFCKGASEIILSMCGKVLNSKGEPLPLSEEQRNKITDIITAFASEALRTLCLAYRDVEDSMNGDHIPEDNYTLIAVIGIKDPVRPGVKDAVKTCLAAGITVRMVTGDNIHTAKAIARECGILTEDGLAIEGPDFRNKTPTEMEELIPKLQVMARSLPADKHTLVTQLRNVFKEVVAVTGDGTNDAPALHEADIGLAMGIVGTEVAKENADVIIMDDNFSTIVNVARWGRSVYINIQKFVQFQLTVNVVALMLNFISACVSGSAPLTAVQMLWVNLIMDTLGALALATEPPNDELMKGHPTRKNRKFITGIMWRNIIGQSIYQITVLLVLKFDGKKLLNLTGSDADTILTTFIFNSFVFCQVFNEINSRDMEKINVFRGMFDSWVFPMVLFFTVIFQVLIVEFLGTFASTKPLSCRLWLGSVLIGAVSLPVAALIKCIPAGTSKPTSEHHNGYEPLPTGPELA | 1037 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 4484233 | 4488132 | + | Conep05aG0105800.1 | Cone5ag1028 | 438046 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone5ag1028 | 1037 | SMART | Cation_ATPase_N_a_2 | 117 | 191 | IPR004014 | - | |
| Cone5ag1028 | 1037 | FunFam | Calcium-transporting ATPase | 770 | 1016 | - | - | |
| Cone5ag1028 | 1037 | Gene3D | - | 169 | 1011 | - | - | |
| Cone5ag1028 | 1037 | Gene3D | - | 20 | 81 | - | - | |
| Cone5ag1028 | 1037 | Pfam | E1-E2 ATPase | 239 | 433 | - | - | |
| Cone5ag1028 | 1037 | Pfam | haloacid dehalogenase-like hydrolase | 630 | 767 | - | - | |
| Cone5ag1028 | 1037 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 456 | 462 | IPR018303 | - | |
| Cone5ag1028 | 1037 | Gene3D | - | 451 | 798 | IPR023214 | - | |
| Cone5ag1028 | 1037 | Pfam | Cation transporting ATPase, C-terminus | 838 | 1011 | IPR006068 | - | |
| Cone5ag1028 | 1037 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 9 | 53 | IPR024750 | GO:0005516(InterPro) | |
| Cone5ag1028 | 1037 | SUPERFAMILY | HAD-like | 453 | 858 | IPR036412 | - | |
| Cone5ag1028 | 1037 | PRINTS | H+-transporting ATPase (proton pump) signature | 610 | 628 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone5ag1028 | 1037 | PRINTS | H+-transporting ATPase (proton pump) signature | 753 | 769 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone5ag1028 | 1037 | PRINTS | H+-transporting ATPase (proton pump) signature | 785 | 810 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone5ag1028 | 1037 | FunFam | Calcium-transporting ATPase | 20 | 80 | - | - | |
| Cone5ag1028 | 1037 | Pfam | Cation transport ATPase (P-type) | 512 | 591 | - | - | |
| Cone5ag1028 | 1037 | SFLD | Haloacid Dehalogenase | 436 | 805 | - | - | |
| Cone5ag1028 | 1037 | FunFam | Calcium-transporting ATPase | 216 | 337 | - | - | |
| Cone5ag1028 | 1037 | FunFam | Calcium-transporting ATPase | 464 | 657 | - | - | |
| Cone5ag1028 | 1037 | FunFam | Calcium-transporting ATPase | 650 | 798 | - | - | |
| Cone5ag1028 | 1037 | SFLD | p-type atpase | 436 | 805 | IPR044492 | - | |
| Cone5ag1028 | 1037 | PANTHER | CATION TRANSPORTING ATPASE | 80 | 1013 | - | GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER) | |
| Cone5ag1028 | 1037 | Gene3D | - | 464 | 657 | IPR023299 | GO:0000166(InterPro) | |
| Cone5ag1028 | 1037 | Pfam | Cation transporter/ATPase, N-terminus | 119 | 186 | IPR004014 | - | |
| Cone5ag1028 | 1037 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 460 | 662 | IPR023299 | GO:0000166(InterPro) | |
| Cone5ag1028 | 1037 | Gene3D | - | 137 | 337 | - | - | |
| Cone5ag1028 | 1037 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 114 | 1014 | IPR006408 | GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro) | |
| Cone5ag1028 | 1037 | SUPERFAMILY | Calcium ATPase, transduction domain A | 238 | 333 | IPR008250 | - | |
| Cone5ag1028 | 1037 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 119 | 1013 | IPR023298 | - | |
| Cone5ag1028 | 1037 | MobiDBLite | consensus disorder prediction | 1017 | 1037 | - | - | |
| Cone5ag1028 | 1037 | NCBIfam | HAD-IC family P-type ATPase | 548 | 698 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone5ag1028 | 1037 | NCBIfam | HAD-IC family P-type ATPase | 723 | 841 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone5ag1028 | 1037 | NCBIfam | HAD-IC family P-type ATPase | 206 | 515 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone5ag1028 | 1037 | CDD | P-type_ATPase_Ca_PMCA-like | 146 | 886 | - | - | |
| Cone5ag1028 | 1037 | PRINTS | P-type cation-transporting ATPase superfamily signature | 777 | 789 | - | - | |
| Cone5ag1028 | 1037 | PRINTS | P-type cation-transporting ATPase superfamily signature | 650 | 661 | - | - | |
| Cone5ag1028 | 1037 | PRINTS | P-type cation-transporting ATPase superfamily signature | 285 | 299 | - | - | |
| Cone5ag1028 | 1037 | PRINTS | P-type cation-transporting ATPase superfamily signature | 454 | 468 | - | - | |
| Cone5ag1028 | 1037 | PRINTS | P-type cation-transporting ATPase superfamily signature | 672 | 682 | - | - | |
| Cone5ag1028 | 1037 | PRINTS | P-type cation-transporting ATPase superfamily signature | 753 | 772 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone5ag1028 | Cone-Chr5:4484233 | Cone6ag1463 | Cone-Chr6:11673578 | 0 | dispersed | |
| Cone13ag0581 | Cone-Chr13:6051084 | Cone5ag1028 | Cone-Chr5:4484233 | 0 | transposed | |
| Cone1ag0800 | Cone-Chr1:53923275 | Cone5ag1028 | Cone-Chr5:4484233 | 1.25E-86 | transposed | |
| Cone1ag0801 | Cone-Chr1:53923959 | Cone5ag1028 | Cone-Chr5:4484233 | 2.42E-112 | transposed | |
| Cone1ag0799 | Cone-Chr1:53921952 | Cone5ag1028 | Cone-Chr5:4484233 | 4.06E-94 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone5ag1028 | K01537 | - | csv:101203529 | 1601.26 |