Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1032 ATGTGCAGAAGATTCAGAGGGATGATGTTATATGGGCATAACAGCTTTCTGGCTGTTGCATGTTTTGTAATATGTTGTTTCTGTTGGTGTTCTTCCCTACTTGTTGCAGAAGCACAGCCAGTGGATCCCATTACTGCTCCATCTGAGGTAAATGCGTTGCAGGCTATAAAGAAGAGTCTGGTTGATCCAGATAAGAGTCTAGAAAGTTGGAGTAAAGGGGGGGACCCTTGTACTTCCAATTGGACTGGAGTTTTGTGCTATAACACCAGTCTGTCTGATGGCTATCTTCATGTTACAGAACTGCAACTACTAAACATGAATTTATCGGGCAGTTTAGCGCCTGAGCTCGGCAACTTATCGTACATGAAGATATTAGATTTTATGTGGAACGATATAAGCGGGAGCATTCCGAAAGAGATAGGCAGTATCTCGACTTTGGAGCTATTGCTTCTCAACGGAAACGAGTTAACCGGTCCATTACCGGACGAGCTCGGTAATCTTCGTAATTTGAACAGAATACAGATCGACGAGAATCACATATCAGGTCTACTCCCGAAATCATTTGCAAACTTGACTGCAGCACAGCACTTTCACATGAACAACAATTCAATTAGCGGGCAACTCCCATTTGAGCTTTACACATTACCAAATCTCCTTCATATCCTTCTTGACAATAACAACTTGACTGGTTATCTCCCTCCAGAGCTGTCTCAATTGCCAAAGTTACTCATACTTCAACTCGATAACAACAATTTCACTGGGACTACGATTCCGGAGTCATATGGCAACATAAGTACATTGCTGAAGATGAGTCTTAGGAACTGTAAATTGCAAGGAACGATTCCGGATTTCAGCAGGATTCCGGGCCTTGGTTATCTTGACCTCAGTTCAAATCAGCTAAATGGATCGATACCGGAAAATAAGCTTTCTGCAAATATCACAACTATTGATTTATCGAACAACAGGCTCACTGGAACTATTCCAACCAATTTTTCTGGTCTTCCTCTTCTTCAGAAATTGTCCATTGCAAATAATTCATTAAACGGCACTGTGCCGTCCGCAATTTGGCAAAGCAGGAGTTCTAATGACTTGCGTGAACTTGTAGTCGAGCTGCAGAAAAACAATCTTTCAAGTATTTCAGGCAGTATTGATGTCCCTCAAAACGTCACTGTCTGGCTTGAAGGAAATCCCCTTTGTTCAAACGCCACTCTGTCCGAGTTTTGTGGATTGCAAAGTGGAGGCGAAACAACAGTCAACTCGACGAGCCTCACTGGCGCCTGTAATAGTCAAACATGCCCATCCACATATGAATGTTTCCCTGCACTATGTCCAGGGTCATGTTTCTGTGCCGCCCCTCTTCATGTTCAATACCGGTTAAAAAGTCCGGGGCTTTCAAACTTTACTTCGTACCAAACTGCATTTGAAGTCTATCTCACATCCGGTCTTATAATAGAGATTAATCAGCTCAACATTGAATTGTTCGTGTGGGAGAAGGGTCCGAGAGTGAGGATGTACCTCAAAATTTTCCCTCAATATGATGTTGCTAATAACAACAGTTCACATCTGTTCAATATGACCGAGGTTCGAAGAATCAGAGGGATGTTTACGGCATGGAAGATTCCGGATAGTGAAGTTTTTGGGCCTTATGAACTCCTTGCTTTCCCACTGACAGATCCTTATGACAATGGTTTGTCCTCATCATCTTCATCCGGAATAAATAATGGCACGCTCGCTGGTATAATAGTAGGGGCAATTGCTGGTGCAGTTATTGTCTCTGCAATCATTTCTCTATTTATAACAAGAGCATATATGAAGAAACATAATGCAGTATCTAGACGTCGTCTGCCTTCGAGAATCACCATAAAGATCGACGGTGTAAAGGATTTCACGTACAAAGAAATGGCCTTAGCCACAAACAATTTCGACAACTCAGCCCAAGTCGGACAGGGAGGTTATGGTAAGGTGTATAGGGGAATTCTGGCTGACGGCACAGCCGTGGCCATTAAACGTGCACAAGAGGCATCGCTGCAGGGCGAGAAGGAATTCCTAACAGAGATAGAACTCTTGTCGAGGTTACATCACCGCAACCTAGTTTCATTGCTCGGATATTGTGATGAAGAAGGCGAGCAGATGCTGGTGTACGAATTCATGCCGAACGGCACTCTCCGGGATCACCTTTCTGCTAAATCGAAGGAGCCATTGAGTTTTTCCATGAGATTAAGAATGGCATTGGAATCAGCTAAGGGGATTCTTTACCTACATACGGAAGCAGATCCTCCAATATTTCACCGAGATATCAAGGCAAGCAATATACTACTCGACTCGAAGCTGAGAGCAAAGGTAGCTGATTTCGGACTTTCACGGCTTGCCCCAGTCCCGAATTTTGAAGGAAACACACCTGCTCATGTGTCGACGGTTGTGAAGGGCACGCCGGGATACCTTGATCCGGAGTACTTCTTAACTCATAAGCTGACGGACAAGAGTGATGTCTATAGCTTAGGGGTGGTCTTTCTCGAACTCTTAACCGGGATGCCGCCAATCTCACGTGGAAAAAATATTGTGAGAGAGGTTAACCTTGTATACCAATCTGGGACGATATTTTCGATTATCGATGGGCAAATGGGGTCTTACCCGTCGGAGTGTGTGGAGAAGTTTGTGAAGTTGGCCATTCAATGCTGCCAGGAAGAAACGGATGCACGTCCCTCCATGGCAGAGGTTGTTAGAGCACTCGAGAACATAGCTGACATGGTGCCCGATTTCGACTTCAAAACAACCACCGCGGAATTGACTAGTGATACAAGTGGGAAGCATCCAAGTAGTACGATGAGCCCATCGTCTTCTTCAGTGAATAATCCTTCTTCGATGTCGGATGTTTCCGGCAGCGCCCTCATTAGCGGAGTTGTTCCAACCATCACGCCTAGGTAA 2925 44.51 MCRRFRGMMLYGHNSFLAVACFVICCFCWCSSLLVAEAQPVDPITAPSEVNALQAIKKSLVDPDKSLESWSKGGDPCTSNWTGVLCYNTSLSDGYLHVTELQLLNMNLSGSLAPELGNLSYMKILDFMWNDISGSIPKEIGSISTLELLLLNGNELTGPLPDELGNLRNLNRIQIDENHISGLLPKSFANLTAAQHFHMNNNSISGQLPFELYTLPNLLHILLDNNNLTGYLPPELSQLPKLLILQLDNNNFTGTTIPESYGNISTLLKMSLRNCKLQGTIPDFSRIPGLGYLDLSSNQLNGSIPENKLSANITTIDLSNNRLTGTIPTNFSGLPLLQKLSIANNSLNGTVPSAIWQSRSSNDLRELVVELQKNNLSSISGSIDVPQNVTVWLEGNPLCSNATLSEFCGLQSGGETTVNSTSLTGACNSQTCPSTYECFPALCPGSCFCAAPLHVQYRLKSPGLSNFTSYQTAFEVYLTSGLIIEINQLNIELFVWEKGPRVRMYLKIFPQYDVANNNSSHLFNMTEVRRIRGMFTAWKIPDSEVFGPYELLAFPLTDPYDNGLSSSSSSGINNGTLAGIIVGAIAGAVIVSAIISLFITRAYMKKHNAVSRRRLPSRITIKIDGVKDFTYKEMALATNNFDNSAQVGQGGYGKVYRGILADGTAVAIKRAQEASLQGEKEFLTEIELLSRLHHRNLVSLLGYCDEEGEQMLVYEFMPNGTLRDHLSAKSKEPLSFSMRLRMALESAKGILYLHTEADPPIFHRDIKASNILLDSKLRAKVADFGLSRLAPVPNFEGNTPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMPPISRGKNIVREVNLVYQSGTIFSIIDGQMGSYPSECVEKFVKLAIQCCQEETDARPSMAEVVRALENIADMVPDFDFKTTTAELTSDTSGKHPSSTMSPSSSSVNNPSSMSDVSGSALISGVVPTITPR 974
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4499206 4504322 + Conep05aG0106200.1 Cone5ag1032 438050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1032 974 Gene3D Ribonuclease Inhibitor 311 402 IPR032675 -
Cone5ag1032 974 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Cone5ag1032 974 SMART serkin_6 641 917 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1032 974 Gene3D Ribonuclease Inhibitor 45 310 IPR032675 -
Cone5ag1032 974 PANTHER RECEPTOR-LIKE PROTEIN 55 68 911 - -
Cone5ag1032 974 CDD STKc_IRAK 647 913 - -
Cone5ag1032 974 ProSiteProfiles Protein kinase domain profile. 641 913 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1032 974 Pfam Leucine Rich Repeat 146 167 IPR001611 GO:0005515(InterPro)
Cone5ag1032 974 MobiDBLite consensus disorder prediction 928 960 - -
Cone5ag1032 974 Gene3D Phosphorylase Kinase; domain 1 614 716 - -
Cone5ag1032 974 SUPERFAMILY Protein kinase-like (PK-like) 627 948 IPR011009 -
Cone5ag1032 974 Pfam Leucine rich repeat N-terminal domain 47 86 IPR013210 -
Cone5ag1032 974 ProSitePatterns Protein kinases ATP-binding region signature. 647 669 IPR017441 GO:0005524(InterPro)
Cone5ag1032 974 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 47 209 - -
Cone5ag1032 974 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 717 926 - -
Cone5ag1032 974 SUPERFAMILY L domain-like 77 428 - -
Cone5ag1032 974 ProSitePatterns Serine/Threonine protein kinases active-site signature. 761 773 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag1032 974 Pfam Leucine rich repeat 312 360 IPR001611 GO:0005515(InterPro)
Cone5ag1032 974 Gene3D Transferase(Phosphotransferase) domain 1 717 927 - -
Cone5ag1032 974 FunFam Leucine-rich repeat protein kinase family protein 605 716 - -
Cone5ag1032 974 Pfam Protein tyrosine and serine/threonine kinase 644 910 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0487 Cone-Chr3:2395717 Cone5ag1032 Cone-Chr5:4499206 3.40E-236 dispersed
Cone3ag0878 Cone-Chr3:4488336 Cone5ag1032 Cone-Chr5:4499206 3.82E-88 dispersed
Cone3ag0879 Cone-Chr3:4502407 Cone5ag1032 Cone-Chr5:4499206 7.51E-88 dispersed
Cone5ag1032 Cone-Chr5:4499206 Cone2ag0496 Cone-Chr2:2687252 1.42E-70 dispersed
Cone1ag0793 Cone-Chr1:53896719 Cone5ag1032 Cone-Chr5:4499206 0 transposed
Cone19ag1457 Cone-Chr19:9464268 Cone5ag1032 Cone-Chr5:4499206 3.37E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82858 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1032 - - - 0.0