Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1046 ATGCCAGAGATTGTAGAAGAAGAACGACATGTCGCTGCTAACGCCAACGCCCTGTTCGGCAAATACGAGGTCGGAAAGCTCCTCGGCTGCGGCGCCTTCGCCAAAGTGTACCACGCGCGAGACGTCCGCTCCGGAGTGAGCGTCGCCATCAAAGTAATCAGCAAGAAGAGACTAATCAATGGCACCACTTTGATGGCAAACATCAAGCGCGAAATAACCATCATGAGCCGCCTCAGCCACCCTCACATCGTCAAGCTCCATGAAGTCCTCGCCACCAAATCCAAGATTTACTACGTCATGGAATTCGTCAAAGGAGGCGAGTTATTCGCCAAGGTGGCTAAAGGCCGGTTCGCAGAAGATCTCTGCCGGAAATATTTCCAACAGCTCATCTCCGCCGTGAGCTACTGCCACCTCCGCGGCATCTTCCACCGCGATCTAAAACCCGAGAATCTCCTCCTCGACGAGAGTGGCGACCTCAAGGTCTCCGATTTTGGACTCTGCGCCGTAACGGACCAGGTCCGGCACGATGGGTTGTTGCACACGCTATGTGGAACCCCTGCTTACGTTGCGCCGGATATTTTAACGAAGAAAGGATACGACGGGGCGAAGGTTGACGTGTGGTCGTGTGGGGTCATACTGTTTGTTTTAAACGCCGGCTACCTTCCGTTTAACGACCCGAATCTGATGGAAATGTACAGGAAGATTTACAAGGGAGAATATCGCTGCCCAAAATGGACGTCCATGGATATGAAACGGTTCTTGTCACGCCTTCTCGATACCAATCCAGATACCAGAATCACAGTCGACGAGATTCTGCGGGACCCGTGGTTCACGAAAGGAGACTCGTACAAGAAGGTGAAGTTCTACGATGATTACGAAGATTCTAATGACTACGCGTGTAAGTTAGATGATCATGGTGGTGTTCATGACGAGGTTAACAAATTGAAGGACATGAATGCGTTCGATATCATATCGTTGTCGTCCGGGTTGGATTTGTCGGGTTTGTTCGACGAGTCGTATCATTCGGTGGAGGAAGGAGAGCGAATTGTGTTGGCGGAGAGGCCGGAGAAGGTTATGGAGAAGGTGGAGGAGTTTGGGAGGGCGGAGAAGTTGAAGGTGAGGAGGAAGAAGGAGTGGGGGGTGGAGGTGGAAGGGCAGAATGGTAAAATCAAGTTTGGTGTGGAGGTTTATAGGTTGAATGATGGACTGGTTATTGTTGAGGCTAAGAGGAGAGGAGGAGATGCCTTCTGGAAGAAGAAGCTTAGACCTCAGCTCATGATGATGATTAGTTCTCAGCCAGACGATACGGAAACAACTTCGTCGTTCCAGTCCCCGCCGGAGGTGTCCGATCATGAGACATTTAGCGTCTGA 1371 51.13 MPEIVEEERHVAANANALFGKYEVGKLLGCGAFAKVYHARDVRSGVSVAIKVISKKRLINGTTLMANIKREITIMSRLSHPHIVKLHEVLATKSKIYYVMEFVKGGELFAKVAKGRFAEDLCRKYFQQLISAVSYCHLRGIFHRDLKPENLLLDESGDLKVSDFGLCAVTDQVRHDGLLHTLCGTPAYVAPDILTKKGYDGAKVDVWSCGVILFVLNAGYLPFNDPNLMEMYRKIYKGEYRCPKWTSMDMKRFLSRLLDTNPDTRITVDEILRDPWFTKGDSYKKVKFYDDYEDSNDYACKLDDHGGVHDEVNKLKDMNAFDIISLSSGLDLSGLFDESYHSVEEGERIVLAERPEKVMEKVEEFGRAEKLKVRRKKEWGVEVEGQNGKIKFGVEVYRLNDGLVIVEAKRRGGDAFWKKKLRPQLMMMISSQPDDTETTSSFQSPPEVSDHETFSV 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4578612 4580258 + Conep05aG0107800.1 Cone5ag1046 438064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1046 456 ProSiteProfiles NAF domain profile. 313 337 IPR018451 GO:0007165(InterPro)
Cone5ag1046 456 FunFam Aurora kinase A 15 106 - -
Cone5ag1046 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag1046 456 CDD CIPK_C 319 425 - -
Cone5ag1046 456 Pfam Protein kinase domain 22 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1046 456 FunFam Non-specific serine/threonine protein kinase 12 305 - -
Cone5ag1046 456 Gene3D Transferase(Phosphotransferase) domain 1 105 283 - -
Cone5ag1046 456 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524(InterPro)
Cone5ag1046 456 Gene3D Phosphorylase Kinase; domain 1 8 104 - -
Cone5ag1046 456 SUPERFAMILY Protein kinase-like (PK-like) 19 278 IPR011009 -
Cone5ag1046 456 SMART serkin_6 22 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1046 456 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 14 416 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cone5ag1046 456 Pfam NAF domain 317 374 IPR004041 GO:0007165(InterPro)
Cone5ag1046 456 ProSiteProfiles Protein kinase domain profile. 22 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1046 456 Gene3D Kinase associated domain 1, KA1 314 430 - -
Cone5ag1046 456 MobiDBLite consensus disorder prediction 432 456 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0774 Cone-Chr1:53814054 Cone5ag1046 Cone-Chr5:4578612 1.48E-295 dispersed
Cone3ag0471 Cone-Chr3:2291342 Cone5ag1046 Cone-Chr5:4578612 4.12E-174 dispersed
Cone5ag1046 Cone-Chr5:4578612 Cone5ag1652 Cone-Chr5:11710174 6.33E-154 dispersed
Cone5ag1046 Cone-Chr5:4578612 Cone5ag1047 Cone-Chr5:4584453 2.19E-133 tandem
Cone1ag0772 Cone-Chr1:53809907 Cone5ag1046 Cone-Chr5:4578612 4.93E-132 wgd
Cone19ag1441 Cone-Chr19:9385129 Cone5ag1046 Cone-Chr5:4578612 1.29E-181 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82860 PF14543 TAXi_N 1.90E-07 CL0129 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1046 - - - 0.0