Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1047 ATGGAGAATAAGTCAAACATATTGATGGGAAGATATGAAGTAGGGAGATTACTAGGCCAAGGAACCTTTGCGAGGGTTTACTATGCAAGAGGCATACAAACTAATCAAAGTGTGGCCATTAAGGTGGTAGACAAAGACAAGATTCTGAAGGTTGGGCTGATTGAGCAGATCAAGAGAGAAATTTCTGTCATGAGATTGGTTAGGCACCCTAATGTTGTACATCTGTATGAGGTAATGGCCACGAAAACTAAGATCTACTTTGTCATGGAATATGCTAAAGGCGGGGAGCTCTTCCACAAGATCTCAAAAGGAAAGCTGAAGGAGGATATGGCCCATAAATATTTCCAGCAGCTAATTAACGTGGTCGATTTCTGTCACAGTAGAGGTGTATATCACCGTGATATAAAACCGGAGAATCTATTGCTAGATGAGAGTGGGAACCTTAAAGTATCTGATTTCGGATTAAGTGCCCTAGCTGAGTCCAGGCGGCAAGATGGGCTTCTTCACACTACTTGTGGGACTCCAGCCTATGTTGCCCCTGAAGTCATAAACAGGAAAGGGTATGATGGTGCCATGGCAGATATTTGGTCTTGTGGGGTGGTCTTGTTTGTCTTGTTGGCTGGTTATCTCCCTTTTCAAGATTCAAATTTGATGGAGCTGTATAGGAAGATTGGAAAAGCAGATTACAAATGCCCTAATTGGTTTCCTCCTGAGACACGGAGACTGCTCAGAAAGATATTGAATCCAAACCCAGATGCTAGGATTTCTATAGAGAAGATTAAGGAAAATTCCTGGTTTAAAAGGGGATTAAGGAGCCCTCCGGAATGTATTAAAACTGAAACGGAAAGTAAGGATGATGGGCCTAAATCCCATACTACTGGTACGGCTGCCGGTTCTGGTCCATCTGGATCATGCGAAGAAGGGGTAGTTAATAAACCTCCAAACTTGAATGCTTTTGATATCATCTCTCTATCCTCAGGATTCAATCTGTCGGGATTATTTGGAGACGTGCATAAAAAGGAAGCGAGGTTTACTTCGAAAAGACCTGCCTCCTTCATTATCTCCAAGCTGGAGGAAATGGGGAAACATCTGAGGCTTAGAGTGCAGAAGAAGGAGCCGGGTATTATGAAATTGGAGGGAATGAAAAAAGGTAGAAACGGGATCTTGTCTATTGACGCAGAGATTTTCGAGATCACTCCATGTTTTCATCTGGTGGAGATGAAGAAATCAAATGGAGATACGTTGGAATATGAGAGGAAGCTGGAAGAGGAGATAAGGCCTGCTCTTAATGACATTGTTTGGGTCTGGCAAGGCGAGGAACAGCACAGCCACCTAGTAGCCGAAGAGCTCTAA 1353 43.31 MENKSNILMGRYEVGRLLGQGTFARVYYARGIQTNQSVAIKVVDKDKILKVGLIEQIKREISVMRLVRHPNVVHLYEVMATKTKIYFVMEYAKGGELFHKISKGKLKEDMAHKYFQQLINVVDFCHSRGVYHRDIKPENLLLDESGNLKVSDFGLSALAESRRQDGLLHTTCGTPAYVAPEVINRKGYDGAMADIWSCGVVLFVLLAGYLPFQDSNLMELYRKIGKADYKCPNWFPPETRRLLRKILNPNPDARISIEKIKENSWFKRGLRSPPECIKTETESKDDGPKSHTTGTAAGSGPSGSCEEGVVNKPPNLNAFDIISLSSGFNLSGLFGDVHKKEARFTSKRPASFIISKLEEMGKHLRLRVQKKEPGIMKLEGMKKGRNGILSIDAEIFEITPCFHLVEMKKSNGDTLEYERKLEEEIRPALNDIVWVWQGEEQHSHLVAEEL 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4584453 4587176 - Conep05aG0107900.1 Cone5ag1047 438065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1047 450 Gene3D Kinase associated domain 1, KA1 311 435 - -
Cone5ag1047 450 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524(InterPro)
Cone5ag1047 450 ProSiteProfiles NAF domain profile. 311 335 IPR018451 GO:0007165(InterPro)
Cone5ag1047 450 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag1047 450 Gene3D Transferase(Phosphotransferase) domain 1 2 299 - -
Cone5ag1047 450 Pfam NAF domain 313 370 IPR004041 GO:0007165(InterPro)
Cone5ag1047 450 FunFam Non-specific serine/threonine protein kinase 311 434 - -
Cone5ag1047 450 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Cone5ag1047 450 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1047 450 SUPERFAMILY Protein kinase-like (PK-like) 8 279 IPR011009 -
Cone5ag1047 450 CDD CIPK_C 317 430 - -
Cone5ag1047 450 MobiDBLite consensus disorder prediction 276 309 - -
Cone5ag1047 450 CDD STKc_SnRK3 11 265 - -
Cone5ag1047 450 SMART serkin_6 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1047 450 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1047 450 FunFam Non-specific serine/threonine protein kinase 2 292 - -
Cone5ag1047 450 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 3 427 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0772 Cone-Chr1:53809907 Cone5ag1047 Cone-Chr5:4584453 6.03E-304 dispersed
Cone3ag0468 Cone-Chr3:2270645 Cone5ag1047 Cone-Chr5:4584453 1.14E-218 dispersed
Cone4ag0084 Cone-Chr4:406201 Cone5ag1047 Cone-Chr5:4584453 3.56E-217 dispersed
Cone5ag1047 Cone-Chr5:4584453 Cone7ag0077 Cone-Chr7:332438 1.30E-218 dispersed
Cone5ag1046 Cone-Chr5:4578612 Cone5ag1047 Cone-Chr5:4584453 2.19E-133 tandem
Cone5ag1047 Cone-Chr5:4584453 Cone7ag1118 Cone-Chr7:8413609 5.26E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82861 PF12894 ANAPC4_WD40 4.70E-05 CL0186 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1047 - - - 0.0