Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1055 ATGGCCACAGAATCAACCGCCAATTTCCAAAACCCAGACTTCCGCCCCGTGCCTTCCCCTCCCGATTTCCATCCCCAAATCATGGTCTCTTCTCACGACGGCCTCCACTTCTGGCAGTACATGGTCGCCGGTTCAATCGCCGGTTCAGTAGAGCACATGGCCATGTTCCCTGTCGATACCGTCAAGACCCATATGCAAGCTCTCGGCTCATGCCCCATCAAATCGGTAGGAGTTCGTCAAGCCCTAAAATCAATTCTCAAGAGAGAAGGTGTAGCTGGACTATACCGTGGGATCGGAGCAATGGGTCTTGGCGCGGGGCCTGCCCACGCCGTGTACTTCTCGGTGTACGAGATTTGTAAGGAGTCTTTCTCGACTGGGAATCCGAATAACTCTGCAGTTCATGCTGTTTCGGGCGTGTTTGCTACGGTGGCGAGTGATGCCGTGCTCACACCTATGGATATGGTGAAGCAGAGGTTGCAGTTGAGTAATAGTCCGTACAAAGGGGTATGGGATTGTGTGAAGAGGGTTATGAAGGAAGAAGGTTTTGGGTCGTTTTATGCATCTTATAAGACTACGGTTTTGATGAATGCGCCTTTTGTGGCTGTTCACTTTGCCACTTATGAGGCTGCTAAGAAGGGTTTGATGGAGGTTTCGCCTGAGAGTGTTAATGATGAGCAGTGGGTCGTTCATGCTACTGCCGGGGCTGCTGCCGGAGCATTGGCGGCAGTTGTGACCACCCCGCTTGATGTGGTTAAAACACAGTTGCAATGCCAGGGTGTATGTGGATGCGATAGATTCCAAAACGATTCAATTCGGGATGTATTTAAAACGATATTGAAAAAGGATGGATCAAGAGGGCTTATGAGAGGATGGATTCCAAGGATGCTTTTCCACGCTCCCGCTGCCGCAATCTGTTGGTCCACTTATGAAGCTTCTAAATCCTTCTTCCAAGATTTGAACAACAAGAGTAACCCTGACACTATCATCTGA 990 49.8 MATESTANFQNPDFRPVPSPPDFHPQIMVSSHDGLHFWQYMVAGSIAGSVEHMAMFPVDTVKTHMQALGSCPIKSVGVRQALKSILKREGVAGLYRGIGAMGLGAGPAHAVYFSVYEICKESFSTGNPNNSAVHAVSGVFATVASDAVLTPMDMVKQRLQLSNSPYKGVWDCVKRVMKEEGFGSFYASYKTTVLMNAPFVAVHFATYEAAKKGLMEVSPESVNDEQWVVHATAGAAAGALAAVVTTPLDVVKTQLQCQGVCGCDRFQNDSIRDVFKTILKKDGSRGLMRGWIPRMLFHAPAAAICWSTYEASKSFFQDLNNKSNPDTII 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4648908 4651156 - Conep05aG0108800.1 Cone5ag1055 438073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1055 329 Gene3D Mitochondrial carrier domain 21 163 IPR023395 -
Cone5ag1055 329 FunFam Mitochondrial RNA-splicing protein MRS3 164 327 - -
Cone5ag1055 329 Pfam Mitochondrial carrier protein 130 216 IPR018108 -
Cone5ag1055 329 Pfam Mitochondrial carrier protein 35 125 IPR018108 -
Cone5ag1055 329 Pfam Mitochondrial carrier protein 225 318 IPR018108 -
Cone5ag1055 329 MobiDBLite consensus disorder prediction 1 22 - -
Cone5ag1055 329 PRINTS Mitochondrial carrier protein signature 40 53 IPR002067 GO:0055085(InterPro)
Cone5ag1055 329 PRINTS Mitochondrial carrier protein signature 144 162 IPR002067 GO:0055085(InterPro)
Cone5ag1055 329 PRINTS Mitochondrial carrier protein signature 53 67 IPR002067 GO:0055085(InterPro)
Cone5ag1055 329 PRINTS Mitochondrial carrier protein signature 234 256 IPR002067 GO:0055085(InterPro)
Cone5ag1055 329 PRINTS Mitochondrial carrier protein signature 186 204 IPR002067 GO:0055085(InterPro)
Cone5ag1055 329 ProSiteProfiles Solute carrier (Solcar) repeat profile. 35 122 IPR018108 -
Cone5ag1055 329 Gene3D Mitochondrial carrier domain 164 328 IPR023395 -
Cone5ag1055 329 ProSiteProfiles Solute carrier (Solcar) repeat profile. 225 315 IPR018108 -
Cone5ag1055 329 SUPERFAMILY Mitochondrial carrier 33 310 IPR023395 -
Cone5ag1055 329 ProSiteProfiles Solute carrier (Solcar) repeat profile. 129 213 IPR018108 -
Cone5ag1055 329 PANTHER MITOFERRIN-1-RELATED 30 318 - GO:0015093(PANTHER)|GO:0031966(PANTHER)|GO:0048250(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag1233 Cone-Chr20:8169237 Cone5ag1055 Cone-Chr5:4648908 1.60E-22 dispersed
Cone5ag1055 Cone-Chr5:4648908 Cone8ag0066 Cone-Chr8:347083 1.81E-38 dispersed
Cone1ag0764 Cone-Chr1:53748305 Cone5ag1055 Cone-Chr5:4648908 4.31E-108 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1055 K15113 - csv:101215924 552.362