Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1074 ATGGAGAATTACTCAGAAAAACAAGAGGGCTCTTGCTATAACTTTTCAGTTCTGCTTGAATTATCTGCTTTCAACAATCTGATCGGATTCAAAAGAGCTGTAGAGGATGAGGGTCATGACATTGACGAGGAAAGCTTGTGGTATGGGAGGAGAATCGGTTCAAAAAAGATGGGCTATGAAGTTAGAACACCTCTCACGATTGCAGCCATGTATGGAAGCAAAGACGTTCTAGTCTATATCCTTGAAACCGGCTGTGTTGATGTTAACAGGGCCTGTGGTTCAGATCGAGTCACAGCTCTTCATTGTGCTGTAGCTGGAGGTTCTTCTTCTTTAGCCCAGATCATCAAGTTTCTGCTGGATTCTTCAGCTGATACTAACATAATGGACGCTAATGGAAACCGGGCTATTGACTTGATTGCTCCTTATTGCTTCCCCTTTAATTCAAGGAAGAAAATTTTGGAAGCTATACTGAAAGGTAGTACTCCTACTGATGAGAGTCTGGATTTATTCAAGCAGATGGATGATGAACCAAGAGAGATGTCCACAACTCGGGCTGAGAAGAAAGAATATCCGGTCGATCTATCCCTTCCGGATATAAAAAACGGGATGTATAGCACAGATGAGTTTAGAATGTATACATTCAAGGTCAAACCTTGTTCAAGAGCCTATTCCCATGACTGGACAGAGTGCCCTTTTGTTCACCCTGGTGAAAATGCAAGACGCAGAGACCCTAGAAAATACCATTACAGCTGTGTCCCTTGTCCGGAATTCAGAAAGGGGTCTTGTAGACAAGGAGATGCTTGTGAATACGCGCATGGTATTTTCGAGTGTTGGCTTCACCCTGCTCAATATAGGACCCGACTTTGCAAGGACGAGACTGGGTGTAATAGAAGAGTATGTTTCTTCGCCCACAAGCCGGAGGAGCTTCGCCCCTTGTATGCCTCAACTGGGTCCGCTGTATCTCCTAGATCATTCTCTGCGACATCTTCGTTAGACATGAGCTCGATTAGCCCTCTTGGGCTTGGGCCCCCTAATTTGATAATACCCCCAATCTCATCCTCGCCCATGAGCCCATCTGGGGTTTCTTCCCCAATGGGCAGCTCAATGTGGTCGAACCAACCAAACATTACTTCCCCAACTGTGCAACTACCCAGTAGCAGATTGAAAGCTTCATTGAGTGCTAGAGACATGGATTTAGACCTTGAATTGCTTGGGATTGAAAGTAGTCGTAGAAGACAGCAACGGTTAGTGGATGAGCTCTCTAGCCTCTCCTCTCAATCCGGTTGGAATAATGGCCTTTCCACTGCTTCAGGTTATAATTCCCCAGGTGACATAACTGGGGAATTAAGTAGGCTTGGAAGGATCAAGCCAACTAACCTTGAAGATATGTTCGGGTCATTGGATAACACAATTTTGTCTCATAGCCCGAACCCACATCTTCGCTCGAGCTACCCTACAAACAACTCATTCTCTTCTGCCAGGTTGTCTCACCCTTATGGTATTGATTCATACCGGACAAATGCGGCTGCAAGTTTGAGTTCAAGATTGGCTGCATTTTCAAAGCGGAGCCAGAGCTTTATAGAACGTGGATCCATGAATCATTTTTCCGGGGTGTCTTCTTCGCCTTCTGCTGCACCCCCTGCTGCTGTTGGTTCTATACTGTCCGATTGGGGATCCCCAGATGGGAAAGTGGAATGGGGTATTCAAGGAGAGGAGCTGAATAAGTTGAGGAAATCTTCTTCCTTCGGTGTTAGAAATAGCGGTCGAAATTTTGCAGGAACTGGATCCACCACCACCGAAGCCTGTGAAACTAACGACCCGGATGTGTCTTGGGTTCAGTCTTTGGTGAAGGATGGTCCGGCTTTGAAACCTGGGCAGTTTGGTTTTGAAGAGGAGGAACAACAGATTTGTCATCTCGACAATGGAGGTTCCGAGAATCTCCTGGCTTGGATGGAGCAAATATACATGGAACAAGAGCAATTGGTGGCATAG 1992 45.93 MENYSEKQEGSCYNFSVLLELSAFNNLIGFKRAVEDEGHDIDEESLWYGRRIGSKKMGYEVRTPLTIAAMYGSKDVLVYILETGCVDVNRACGSDRVTALHCAVAGGSSSLAQIIKFLLDSSADTNIMDANGNRAIDLIAPYCFPFNSRKKILEAILKGSTPTDESLDLFKQMDDEPREMSTTRAEKKEYPVDLSLPDIKNGMYSTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCRQGDACEYAHGIFECWLHPAQYRTRLCKDETGCNRRVCFFAHKPEELRPLYASTGSAVSPRSFSATSSLDMSSISPLGLGPPNLIIPPISSSPMSPSGVSSPMGSSMWSNQPNITSPTVQLPSSRLKASLSARDMDLDLELLGIESSRRRQQRLVDELSSLSSQSGWNNGLSTASGYNSPGDITGELSRLGRIKPTNLEDMFGSLDNTILSHSPNPHLRSSYPTNNSFSSARLSHPYGIDSYRTNAAASLSSRLAAFSKRSQSFIERGSMNHFSGVSSSPSAAPPAAVGSILSDWGSPDGKVEWGIQGEELNKLRKSSSFGVRNSGRNFAGTGSTTTEACETNDPDVSWVQSLVKDGPALKPGQFGFEEEEQQICHLDNGGSENLLAWMEQIYMEQEQLVA 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4765337 4768357 - Conep05aG0110900.1 Cone5ag1074 438092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1074 663 MobiDBLite consensus disorder prediction 168 187 - -
Cone5ag1074 663 Gene3D - 249 311 - -
Cone5ag1074 663 SMART c3hfinal6 248 274 IPR000571 GO:0046872(InterPro)
Cone5ag1074 663 SMART c3hfinal6 283 306 IPR000571 GO:0046872(InterPro)
Cone5ag1074 663 ProSiteProfiles Zinc finger C3H1-type profile. 253 275 IPR000571 GO:0046872(InterPro)
Cone5ag1074 663 PANTHER UNKEMPT FAMILY MEMBER 53 618 IPR045234 -
Cone5ag1074 663 MobiDBLite consensus disorder prediction 167 187 - -
Cone5ag1074 663 ProSiteProfiles Ankyrin repeat profile. 95 130 IPR002110 GO:0005515(InterPro)
Cone5ag1074 663 SUPERFAMILY Ankyrin repeat 19 142 IPR036770 -
Cone5ag1074 663 Gene3D - 23 144 IPR036770 -
Cone5ag1074 663 SMART ANK_2a 60 90 IPR002110 GO:0005515(InterPro)
Cone5ag1074 663 SMART ANK_2a 95 127 IPR002110 GO:0005515(InterPro)
Cone5ag1074 663 FunFam Zinc finger CCCH domain-containing protein 66 206 274 - -
Cone5ag1074 663 Pfam Ankyrin repeats (3 copies) 60 129 IPR002110 GO:0005515(InterPro)
Cone5ag1074 663 ProSiteProfiles Ankyrin repeat region circular profile. 95 129 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0515 Cone-Chr19:4239380 Cone5ag1074 Cone-Chr5:4765337 9.08E-147 dispersed
Cone3ag0063 Cone-Chr3:379515 Cone5ag1074 Cone-Chr5:4765337 3.60E-138 dispersed
Cone5ag1074 Cone-Chr5:4765337 Cone7ag0724 Cone-Chr7:4337825 1.81E-57 dispersed
Cone1ag0567 Cone-Chr1:5761316 Cone5ag1074 Cone-Chr5:4765337 0 wgd
Cone1ag1210 Cone-Chr1:55944624 Cone5ag1074 Cone-Chr5:4765337 4.30E-195 wgd
Cone5ag0196 Cone-Chr5:813615 Cone5ag1074 Cone-Chr5:4765337 2.21E-191 wgd
Cone5ag1074 Cone-Chr5:4765337 Cone7ag1137 Cone-Chr7:8577193 6.91E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46173 PF01209 Ubie_methyltran 2.70E-85 CL0063 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1074 - - - 0.0