Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1093 ATGGCGACACCGTTATCTGTATCTTCAGTCTTCAACACATTCCTCTCTCTGCTCCTCCTCCATCTCGGCTGCTTCATCTTCACAAACACCACCACCCACCGCCACCTTGAAACTCCTCCGCCGTCTAAAAAGAGCAAGGCTATAATCACCTCCTCCTGGTCCTATCTCAAACGCATCTTCTCTTACAAAACCTGCAAATCCGCCATACAAACCGGTCCATCTACCCCGGCCCGATCCTCCCAGCACTCCGGCTCCACCCTGAACTTAATCCCACCTGGATCCTGCCCCGAATCCGATATCTCAACCCAACACGCATTCTTCCCCCTCCGCAACGATATCTTCCCCTGCACATTTTGCGGCGAGATTTTCCAGAAACAGCAGCTCCTCGAGAATCACCAGGCGATAAAGCACGCGGTATCGGAGCTCCTAGAAGGCGATTCAGGCAAGAACATAGTCCGGATCATATTCGAATCGGGCTGGAGTCCAAACAACAACGAATCCAAACAACCGAAAATCAATCGGATCCTGAAAATCCATAACTGCTCTAAGATATTGAGCAGATTCGAGGAGTATAGAGAATCGGTGAAAGCCAAAGCTTCTGCTCGGAACGGCATCGTAAGGAGACGGAACGAGAGGTGCGTAGCGGACGGGAACGAGCTTCTGAGATTTCACTGTTCGACTTTTCTCTGTGATTTGGGACTTGATGGTAATTCGAGCATTTGTTCGCAACAATTTTGCAATATTTGCGGGATCATCAAGTCCGGATTCTCGCCCAAATTGGATGGGATTTCCACGCTGTCACGTAGCTGGAGGGCACACGCGGCGGTTCCGGAAGAGATGGAGGAGGAGTTCAAGTTCATGAACGTGAAGCGGGCGATGCTGGTGTGCCGGGTGGTGGCCGGACGGGTCGGATGTGATGGTGACGAAGAGGGGTTGGACAAGGAGGATGGTGGGTTTGACTCGATCGTGGGAAGGAGTGATCATGAGAGGGGGCCCCGGATAAAGATAGACGAAGAGGAGCTGTTGGTTTTTAATCCTAGGGCTGTGCTTCCTTGCTTTGTGATTGTGTACACTCTTTGA 1080 51.48 MATPLSVSSVFNTFLSLLLLHLGCFIFTNTTTHRHLETPPPSKKSKAIITSSWSYLKRIFSYKTCKSAIQTGPSTPARSSQHSGSTLNLIPPGSCPESDISTQHAFFPLRNDIFPCTFCGEIFQKQQLLENHQAIKHAVSELLEGDSGKNIVRIIFESGWSPNNNESKQPKINRILKIHNCSKILSRFEEYRESVKAKASARNGIVRRRNERCVADGNELLRFHCSTFLCDLGLDGNSSICSQQFCNICGIIKSGFSPKLDGISTLSRSWRAHAAVPEEMEEEFKFMNVKRAMLVCRVVAGRVGCDGDEEGLDKEDGGFDSIVGRSDHERGPRIKIDEEELLVFNPRAVLPCFVIVYTL 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4864741 4866521 - Conep05aG0112800.1 Cone5ag1093 438111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1093 359 Gene3D - 141 358 - -
Cone5ag1093 359 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 51 357 - -
Cone5ag1093 359 SUPERFAMILY ADP-ribosylation 139 358 - -
Cone5ag1093 359 ProSitePatterns Zinc finger C2H2 type domain signature. 116 137 IPR013087 -
Cone5ag1093 359 ProSiteProfiles Zinc finger C2H2 type domain profile. 114 142 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0365 Cone-Chr12:2082007 Cone5ag1093 Cone-Chr5:4864741 1.07E-28 dispersed
Cone5ag1093 Cone-Chr5:4864741 Cone7ag1552 Cone-Chr7:10684926 1.77E-59 dispersed
Cone1ag0583 Cone-Chr1:5847229 Cone5ag1093 Cone-Chr5:4864741 3.23E-230 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46174 PF10191 COG7 1.80E-266 CL0294 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1093 - - - 0.0