Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1121 ATGGCAGAGATTTGTTGTGGAATGATGAGTGATAGTGAAAGTTCGCCGCCGTACGAGCCTATCTCACGAGCGGCTAGGCGGCGGAGAATGGAGATCAGGAGGTTTAAGTTTGTGGCCGGGGTGGCACCGCAGGAGACGGCGGAGAACGAGCAGAAACGCAGGAAGTTTGAGTTCTATGCGGCGTCGCTTCCCGGCTCTGAATGCGATAATGCAGTTCAGGACTCTGGTTCCGATGAAGAAAAACGCGTTACGGTAAAGGTAGGATCGGAGAGCTGTAAGGAGATACAAAATTTGTGTAGTTCTTCGAGCATACCAGAATCGACGTCGATGAGTGAAATTCCCATCCCTGCAACGAGGGATCCAGCTTCTTCCAGAGAGTATCTGAGATTCGGCGTGGCTTCATTATGTGGAAGGAGGAGAGATATGGAAGATGCCGTTGCTCTTCATCCTTCATTTTTCCGGTCAGATGATGAAGATACAGCTCAATTTCATTACTTCGCTGTTTACGATGGCCATGGATGCTCTCATGTGGCGACGAAGTGCAGAGAAAGACTGCACGAGATTGTGAAGGAAGAGATGGAGAGTAAAGAGGAGCCGAGAGGTGGCGGTGAGTGGAAGAGCGTAATGGAGCGAAGTTTTTGCCGGATGGACAAAGAAGTTGTCGCGGTGAATGAGGGAGCGACAGCTGTTGGTAATTGCAGATGTGAGCTTCAGTCGCCGGAGTGCGACGCCGTTGGATCTACTGCCGTCGTTGCAGTCGTTTCTCCTGATAAAATAATCGTCGCTAATTGCGGTGACTCTAGAGCAGTTCTCTGTCGAGATGGAAAGGCTATTCCACTGTCGTCTGATCACAAGCCGGATCGCCCAGATGAGCTAAAACGGATCGAATCTGTGGGTGGGCGGGTCATATACTGGGAGGGTGCTCGGGTTCTCGGTGTTCTTGCCATGTCAAGAGCTATAGGTGATAATTATCTGAAGCCATATGTGAGCTGTGAGCCGGAGATCACGATCACAGATCGGACGGCAGAGGATGAGTGTTTGATAATAGCAAGTGATGGGCTTTGGGATGTGGTATCCAATGAGATGGCATGCGGGGTGGCCCGAATGTGCCTGAGAGGAAGGGGAAACTCGGATGCATTATCCGCAACGGGGAGTGATGTTTCTGGGATAGAGATATCCGATAAGGTATGTAATAACGCATCCATGTTGCTAACGAAACTGGCTTTGGCTAGGCACAGTTCGGACAACGTTAGCGTGGCTGTCGTAGACCTTAGGAAGGATAATGTGGCCTAA 1293 50.5 MAEICCGMMSDSESSPPYEPISRAARRRRMEIRRFKFVAGVAPQETAENEQKRRKFEFYAASLPGSECDNAVQDSGSDEEKRVTVKVGSESCKEIQNLCSSSSIPESTSMSEIPIPATRDPASSREYLRFGVASLCGRRRDMEDAVALHPSFFRSDDEDTAQFHYFAVYDGHGCSHVATKCRERLHEIVKEEMESKEEPRGGGEWKSVMERSFCRMDKEVVAVNEGATAVGNCRCELQSPECDAVGSTAVVAVVSPDKIIVANCGDSRAVLCRDGKAIPLSSDHKPDRPDELKRIESVGGRVIYWEGARVLGVLAMSRAIGDNYLKPYVSCEPEITITDRTAEDECLIIASDGLWDVVSNEMACGVARMCLRGRGNSDALSATGSDVSGIEISDKVCNNASMLLTKLALARHSSDNVSVAVVDLRKDNVA 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4987859 4990057 - Conep05aG0115700.1 Cone5ag1121 438139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1121 430 SUPERFAMILY PP2C-like 121 425 IPR036457 -
Cone5ag1121 430 ProSiteProfiles PPM-type phosphatase domain profile. 129 424 IPR001932 -
Cone5ag1121 430 MobiDBLite consensus disorder prediction 1 20 - -
Cone5ag1121 430 Pfam Protein phosphatase 2C 129 388 IPR001932 -
Cone5ag1121 430 SMART PP2C_4 119 422 IPR001932 -
Cone5ag1121 430 CDD PP2Cc 129 424 IPR001932 -
Cone5ag1121 430 PANTHER PROTEIN PHOSPHATASE 93 423 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cone5ag1121 430 Gene3D - 124 429 IPR036457 -
Cone5ag1121 430 FunFam Protein phosphatase 2C 37 124 430 - -
Cone5ag1121 430 ProSitePatterns PPM-type phosphatase domain signature. 165 173 IPR000222 GO:0043169(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag1121 Cone-Chr5:4987859 Cone9ag0849 Cone-Chr9:4151370 1.54E-81 dispersed
Cone5ag0824 Cone-Chr5:3528752 Cone5ag1121 Cone-Chr5:4987859 1.42E-57 transposed
Cone1ag0610 Cone-Chr1:5960182 Cone5ag1121 Cone-Chr5:4987859 1.27E-277 wgd
Cone1ag1257 Cone-Chr1:56127181 Cone5ag1121 Cone-Chr5:4987859 1.90E-146 wgd
Cone5ag0241 Cone-Chr5:1020716 Cone5ag1121 Cone-Chr5:4987859 7.68E-143 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1121 K14497 - vvi:100255251 493.812