Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1126 ATGGGTGAGGAGGTGAGGATGACCGAGTATGAAGGATGCGATGGAGATGAAGATCGAGTTCTCGAATGGGAAACGGGTCTACCCGACCCGGACGATCTCACCCCTCTAACTAAGCACTTGATCCCACCAGAGCTCGCATCGGCGTTTAGAATCTCGCCGGAACCCTGCCGGACGATCTTAGACGTCAATCGAGCCTCACAGACAACGCTCTCAAATCTCCGTGGAGGACAATCGCAAGGCTTCTCCTCATCTAACAATTTCAAATCCTTCGAAGAACGGGGTCGGGTCGACGCGGACCCGATGGTAGTAGGATGGGAAGAAACCACCACCAATCCAGACGGCTCTGCCCTTGATCCCAGAAAATTGAGGAAGCTAGACACCACAGAAGAAGCCGATTCAGCTCTCAGGACCGAGAATTCAACTGAAGTAGACCCCTCGGCTCGAACCCTGAAGCGACCTAGGCTCGTGTGGACCCCACAATTACACAAGCGGTTCGTCGATGTAGTAGCTCATCTAGATATCAAAAACGCAGTGCCTAAAACAATCATGCAATTGATGAACGTAGAGGGATTAACCCGAGAAAACGTAGCGAGCCATCTTCAAAAGTACCGCCTTTATCTGAAACGAATGCAAGGATTCTCAAACGAGGGACCCTCTGCATCAGACCACCTATTCGCGTCCACTCCGGTCCCACAGAGCCTGCCCGAATCGAGCTCAAATGGACCAGGAACTGGGCAGTTGCCAGTTCCGATTCCGATGCCTTATGGGCCACCACAAATGGTGCCTATGTCGTTACTTGGCATGTCGGCAGCATCTCATGGTCATATGGTCGGTCCCTTGGGTAACGTGGGCGGGTACCCATATAGTATGATGCACCAGCAGCAGCAAGATTGGTCGGGGAATAAGTATGGATCCATGGTTTCATATCCTCATCATGTTGGTCATTATAATTCTAATGATAAATGA 966 51.04 MGEEVRMTEYEGCDGDEDRVLEWETGLPDPDDLTPLTKHLIPPELASAFRISPEPCRTILDVNRASQTTLSNLRGGQSQGFSSSNNFKSFEERGRVDADPMVVGWEETTTNPDGSALDPRKLRKLDTTEEADSALRTENSTEVDPSARTLKRPRLVWTPQLHKRFVDVVAHLDIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGFSNEGPSASDHLFASTPVPQSLPESSSNGPGTGQLPVPIPMPYGPPQMVPMSLLGMSAASHGHMVGPLGNVGGYPYSMMHQQQQDWSGNKYGSMVSYPHHVGHYNSNDK 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5011016 5013391 - Conep05aG0116200.1 Cone5ag1126 438144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1126 321 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 14 300 IPR044841 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cone5ag1126 321 Pfam Myb-like DNA-binding domain 155 204 IPR001005 -
Cone5ag1126 321 SUPERFAMILY Homeodomain-like 149 209 IPR009057 -
Cone5ag1126 321 MobiDBLite consensus disorder prediction 217 245 - -
Cone5ag1126 321 FunFam Two-component response regulator 148 211 - -
Cone5ag1126 321 Gene3D - 149 211 - -
Cone5ag1126 321 MobiDBLite consensus disorder prediction 217 247 - -
Cone5ag1126 321 NCBIfam myb-like DNA-binding domain, SHAQKYF class 153 205 IPR006447 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0471 Cone-Chr10:2186437 Cone5ag1126 Cone-Chr5:5011016 7.53E-42 dispersed
Cone3ag0500 Cone-Chr3:2465908 Cone5ag1126 Cone-Chr5:5011016 6.48E-44 dispersed
Cone5ag1126 Cone-Chr5:5011016 Cone7ag0120 Cone-Chr7:505034 2.54E-21 dispersed
Cone1ag0620 Cone-Chr1:6042713 Cone5ag1126 Cone-Chr5:5011016 2.93E-208 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46176 PF00082 Peptidase_S8 8.90E-51 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1126 - - - 0.0