Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1140 ATGGCAATGTTAACTACTACACTGTACGTCACTGCACTTATTTCTACAATGTGGGTAGCTGAAGCTAGAATTCCCGGCGTTTTCACCGGCGGCTCGTGGCAAAATGCTCACGCCACCTTCTACGGTGGCTCTGACGCCTCTGGCACAATGGGTGGAGCTTGTGGGTACGGCAACCTGTACAGCCAAGGCTACGGCGTGAGCACGGCGGCGCTGAGCACAGCGCTATTCAACGGTGGGTTGAGCTGCGGCGCTTGCTTTGAGTTAAAGTGCGCCTCAGACCCACGGTGGTGCCACTCCGGCAGCCCATCGATCTTTATCACCGCCACCAACTTTTGCCCGCCAAATTATGCTCTTCCTAATGACAATGGCGGCTGGTGTAACCCTCCCCGGTCGCACTTCGACCTCGCCATGCCCATGTTCCTCAAGATCGCCGAGTACCGCGCCGGAATCGTCCCCGTTTCATACCGGCGGGTGCCATGCCGGAAGAAAGGGGGGATAAGGTTTACGATCAACGGGTTCCGGTACTTTAACCTGGTTTTGGTCACGAACGTCGCGGGTGCAGGGGATATAGTGAGGGTGAGTGTGAAAGGGTCAAAAACAGGGTGGATGAGTATGAGCAGAAATTGGGGTCAAAACTGGCAGTCAAACGCGGTGTTGGTGGGCCAGTCTCTGTCGTTTAGGGTGACAGGCAGTGACAGAAGGACTTCCACCTCGTGGAACATCGTTCCAGCTCATTGGCAGTTCGGTCAAACTTTCACCGGCAAGAATTTTCGAGTCTGA 780 55.26 MAMLTTTLYVTALISTMWVAEARIPGVFTGGSWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGVSTAALSTALFNGGLSCGACFELKCASDPRWCHSGSPSIFITATNFCPPNYALPNDNGGWCNPPRSHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGSKTGWMSMSRNWGQNWQSNAVLVGQSLSFRVTGSDRRTSTSWNIVPAHWQFGQTFTGKNFRV 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5119294 5121035 + Conep05aG0117700.1 Cone5ag1140 438158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1140 259 FunFam Expansin 165 257 - -
Cone5ag1140 259 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Cone5ag1140 259 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576(InterPro)
Cone5ag1140 259 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576(InterPro)
Cone5ag1140 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576(InterPro)
Cone5ag1140 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576(InterPro)
Cone5ag1140 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576(InterPro)
Cone5ag1140 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576(InterPro)
Cone5ag1140 259 CDD DPBB_EXPA_N 33 160 - -
Cone5ag1140 259 FunFam Expansin 22 161 - -
Cone5ag1140 259 PANTHER EXPANSIN-A15 9 257 IPR002963 GO:0009664(InterPro)
Cone5ag1140 259 SUPERFAMILY Barwin-like endoglucanases 32 183 IPR036908 -
Cone5ag1140 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Cone5ag1140 259 Pfam Lytic transglycolase 68 155 IPR009009 -
Cone5ag1140 259 SUPERFAMILY PHL pollen allergen 162 254 IPR036749 -
Cone5ag1140 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
Cone5ag1140 259 Gene3D - 165 257 IPR036749 -
Cone5ag1140 259 PRINTS Expansin signature 90 101 IPR002963 GO:0009664(InterPro)
Cone5ag1140 259 PRINTS Expansin signature 176 197 IPR002963 GO:0009664(InterPro)
Cone5ag1140 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664(InterPro)
Cone5ag1140 259 PRINTS Expansin signature 104 114 IPR002963 GO:0009664(InterPro)
Cone5ag1140 259 PRINTS Expansin signature 140 153 IPR002963 GO:0009664(InterPro)
Cone5ag1140 259 PRINTS Expansin signature 211 232 IPR002963 GO:0009664(InterPro)
Cone5ag1140 259 PRINTS Expansin signature 123 140 IPR002963 GO:0009664(InterPro)
Cone5ag1140 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664(InterPro)
Cone5ag1140 259 PRINTS Expansin signature 164 176 IPR002963 GO:0009664(InterPro)
Cone5ag1140 259 Gene3D - 19 161 IPR036908 -
Cone5ag1140 259 SMART dpbb_1 68 155 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0241 Cone-Chr3:1282029 Cone5ag1140 Cone-Chr5:5119294 1.46E-71 dispersed
Cone5ag1140 Cone-Chr5:5119294 Cone6ag0576 Cone-Chr6:2820883 4.80E-129 dispersed
Cone1ag0635 Cone-Chr1:6129085 Cone5ag1140 Cone-Chr5:5119294 3.89E-190 wgd
Cone1ag1273 Cone-Chr1:56207894 Cone5ag1140 Cone-Chr5:5119294 4.45E-159 wgd
Cone10ag0314 Cone-Chr10:1493173 Cone5ag1140 Cone-Chr5:5119294 1.19E-161 wgd
Cone11ag1137 Cone-Chr11:8754627 Cone5ag1140 Cone-Chr5:5119294 2.01E-169 wgd
Cone18ag0444 Cone-Chr18:2169890 Cone5ag1140 Cone-Chr5:5119294 5.36E-170 wgd
Cone3ag0344 Cone-Chr3:1750135 Cone5ag1140 Cone-Chr5:5119294 2.10E-155 wgd
Cone4ag1056 Cone-Chr4:9198068 Cone5ag1140 Cone-Chr5:5119294 4.23E-169 wgd
Cone5ag0260 Cone-Chr5:1106128 Cone5ag1140 Cone-Chr5:5119294 7.37E-158 wgd
Cone5ag1140 Cone-Chr5:5119294 Cone7ag1075 Cone-Chr7:8181630 1.86E-170 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1140 - - - 0.0