Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1149 ATGGGTAACGGCGTTGGTAAGCTGAGTACTTGTTTCACTGGAGTCGGCGATGGTGGCCGGAGGCCAGGAGTCGGAGATATATCCGTTCTGATATCGGATCCTCTCGATGAGGGCTTGGGCCACTCCTTCTACTACGTACGACCCGACCAGTCTCATATCTCATCATCAAAGGTCCATTCAGAACAAACGACGACGTTTAGAGCAATCTCAGGTGCTTCGATCAGTGCGAACACTTCTACTCCTCTCTCCACATCTCTAATCGATCTCTATTCCTATAACAGCGTCGATGGAGCTGCCTCTTTTGAAAGCTCTACCTCCTTCGCTTCGATTCCTCTCCAACCGATTCCGCGAAATTTGATCAACTCCGGCCCGATTTCTGGAAATTACAACGGCTTTCCGAGCTCCGGCCTCCTGGAAAGAGGTTTTCTATCCGGCCCCATCGAGCGTGGATTCATGTCCGGCCCGTTGGACCGTGGACTTTTCTCCGGCCCCATGGAAAAGGGCTCCTCCGATGAGTTTCCGAGGAGCTTCTCTCACGGTCGTTTTGCTTTCAGATCCAGATCGAGAAAAGGGCGGCTAATACGGATCCTTCGGCGAGCGATATCGAAGACGATATATCGTGGAGGACAAAACTCCATCGTCACGCCAATCAAAGGGGTGAAAGAACCCGACTGGATTGTCGGAACCGATAAGCACAACGAGAATTTGACGATAAGTAGCGTGAATTTGAGCAGCGATGGTAGTTTGGAAGATGATGATTCCCTGGAAAGCCAGAATCTACAGTGGGCGCAGGGGAAAGCAGGGGAGGATCGAGTTCATATTGTCGTTTCGGAAGAACACGGGTGGGTTTTCGTCGGAATCTATGATGGATTCAACGGCCCAGATGCTCCGGATTATCTTCTGTCTAATTTATATTCATCTGTTCATAAAGAGCTTAAAGGTTTATTATGGGATGAGAAGTTCGAATCAGCCATAGCCACCTCTCCTGTTCGGTCGGACAGTTCTTTCTCTGGAACTAGAGAATCGTTACAACAGGTTAGTGATAATGATTTTCCAAGGAATCTTATGTTTGATGATTGTTCTCAATGTTTTGATCAAGCGAATCATCCTTGTGCAAGTGGGGATGAGAATTTCGATTTGAATTCGAGGAGAAGAAAAGGAAGAAATTCTAAGACAAAATATGTAGGAGCTGCCAAGAAGTGGGAAGATAATCAAAGGAGGTGGAAATGTGAGTGGGACCGGGAAAGGGTGGAGCTGGACCGGAGGTTAAAGGAGCAGTTGAACCGATCCAAGTCGGATAAATCGATCAATCACAATGACGTATTGAAAGCTCTGTCTCAAGCTTTGGTGAAAACAGAGGAGTCGTATTTGGAAATTGCAGACAAGATGGTTTTGGCAAATCCTGAACTAGCTTTAATGGGTTCTTGTGTGCTTGTAATGCTTATGAAAGGGGAAGATGTTTATGTGATGAATGTGGGTGATAGTCGAGCCGTTTTGGCTCAAAAGGCCGAGCCTGATTATTGGGTCGGAAAGGTTCGACAGGACCTAGAGAGGATTAATGAAGAGTCGATGAATGATCTTGAGGGTTTAGATAGTGATGATGCTCTTTATTCTATTCCTAACTTGGATGCTGTTCAGCTATCAATGGATCACAACACAGATGTGGAAGAAGAAGTTCAGAGGATTAAAAATGAACACCCGGATGATTCATTAGCCATAAAGAAGGACCGTGTAAAAGGTTCAGTGAAGGTGACTCGAGCCTTTGGAGCCGGTTTTCTAAAACAGCCTAAGTGGAACAATGCACTTCTAGAGGTGTTCCAAATCGACTATGTAGGAAATTCCCCCTACATCACTTGTTTCCCATCTCTGAAACATCACAGATTAGGCCCGAAAGACCGGTTCTTGATCTTATCGTCAGACGGGCTTTACCAATACTTCACAAACGAAGAAGCTGTTTCTGAAGTGGAGCATTTCATCGCACAACAGCCCGAAGGCGATCCAGCGCAACATCTCGTTGAAGAAGTTCTATTCAGAGCCGCTAAGAAAGCTGGTATGGACTTCCACGAGTTGCTTGAAATACAACAAGGCGATAGACGGCAGTACCATGACGATGTTTCGATTATCGTTATTTCTTTAGAGGGGAGGATTTGGAGATCATGTGTATAA 2166 46.03 MGNGVGKLSTCFTGVGDGGRRPGVGDISVLISDPLDEGLGHSFYYVRPDQSHISSSKVHSEQTTTFRAISGASISANTSTPLSTSLIDLYSYNSVDGAASFESSTSFASIPLQPIPRNLINSGPISGNYNGFPSSGLLERGFLSGPIERGFMSGPLDRGLFSGPMEKGSSDEFPRSFSHGRFAFRSRSRKGRLIRILRRAISKTIYRGGQNSIVTPIKGVKEPDWIVGTDKHNENLTISSVNLSSDGSLEDDDSLESQNLQWAQGKAGEDRVHIVVSEEHGWVFVGIYDGFNGPDAPDYLLSNLYSSVHKELKGLLWDEKFESAIATSPVRSDSSFSGTRESLQQVSDNDFPRNLMFDDCSQCFDQANHPCASGDENFDLNSRRRKGRNSKTKYVGAAKKWEDNQRRWKCEWDRERVELDRRLKEQLNRSKSDKSINHNDVLKALSQALVKTEESYLEIADKMVLANPELALMGSCVLVMLMKGEDVYVMNVGDSRAVLAQKAEPDYWVGKVRQDLERINEESMNDLEGLDSDDALYSIPNLDAVQLSMDHNTDVEEEVQRIKNEHPDDSLAIKKDRVKGSVKVTRAFGAGFLKQPKWNNALLEVFQIDYVGNSPYITCFPSLKHHRLGPKDRFLILSSDGLYQYFTNEEAVSEVEHFIAQQPEGDPAQHLVEEVLFRAAKKAGMDFHELLEIQQGDRRQYHDDVSIIVISLEGRIWRSCV 721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5179324 5182171 + Conep05aG0118700.1 Cone5ag1149 438167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1149 721 CDD PP2Cc 419 712 IPR001932 -
Cone5ag1149 721 Coils Coil 513 533 - -
Cone5ag1149 721 SMART PP2C_4 253 710 IPR001932 -
Cone5ag1149 721 Gene3D - 233 717 IPR036457 -
Cone5ag1149 721 Pfam Protein phosphatase 2C 544 669 IPR001932 -
Cone5ag1149 721 Pfam Protein phosphatase 2C 424 504 IPR001932 -
Cone5ag1149 721 PANTHER PROTEIN PHOSPHATASE 2C 246 712 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
Cone5ag1149 721 ProSiteProfiles PPM-type phosphatase domain profile. 252 712 IPR001932 -
Cone5ag1149 721 SUPERFAMILY PP2C-like 266 713 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0600 Cone-Chr12:5331842 Cone5ag1149 Cone-Chr5:5179324 1.17E-154 dispersed
Cone4ag0153 Cone-Chr4:707124 Cone5ag1149 Cone-Chr5:5179324 2.12E-73 dispersed
Cone5ag1149 Cone-Chr5:5179324 Cone8ag0618 Cone-Chr8:6075605 8.35E-144 dispersed
Cone1ag0643 Cone-Chr1:6164102 Cone5ag1149 Cone-Chr5:5179324 0 wgd
Cone3ag0339 Cone-Chr3:1717551 Cone5ag1149 Cone-Chr5:5179324 9.28E-224 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1149 - - - 0.0