Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1152 ATGTTTGAGACTTTCAACACTCCTGCTATGTACGTTGCCATCCAGGCTGTTCTTTCCCTCTACGCCAGTGGACGTACAACTGGTATTGTTTTGGACTCTGGAGATGGTGTCAGCCACACTGTCCCCATTTATGAGGGGTATGCCCTCCCGCACGCTATCCTTCGGCTTGACCTTGCAGGCCGTGACCTCACTGATGCCCTTATGAAAATCCTGACCGAGCGTGGCTATTCCTTTACCACCACTGCTGAGCGTGAAATTGTAAGAGACATGAAGGAGAAGCTTGCATATATCGCTCTTGATTATGAGCAAGAACTTGAAACTTCTAAGACTATATCTGCTGTTGAGAAAAGCTATGAATTGCCTGATGGGCAGGTGATTACTATTGGTGCTGAGCGATTCCGTTGTCCGGAAGTTCTTTTCCAGCCATCCATGATCGGAATGGAAGCTGCTGGTATTCATGAAACAACTTACAATTCTATCATGAAGTGTGATGTTGATATTAGGAAGGACTTATACGGAAACATTGTTCTTAGTGGTGGATCTACCATGTTCCCGGGCATTGCTGACAGAATGAGCAAGGAAATTACTGCTTTGGCCCATAGCAGCATGAAAATTAAGGTGGTGGCCCCACCTGAGAGAAAGTACAGTGTCTGGATTGGTGGGTCTATCTTGGCATCTCCCAGCACTTTCCAGCAGATTTGGATTGCGAAAGCAGAGTATGATGAGTCGGGTCCATCAATTGTGCATAGGAAATGCTTTTGA 762 46.19 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTISAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAHSSMKIKVVAPPERKYSVWIGGSILASPSTFQQIWIAKAEYDESGPSIVHRKCF 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5192143 5193347 - Conep05aG0119000.1 Cone5ag1152 438170

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1152 253 ProSitePatterns Actins signature 2. 234 242 IPR004001 -
Cone5ag1152 253 PANTHER ACTIN 1 245 IPR004000 GO:0005737(PANTHER)
Cone5ag1152 253 SUPERFAMILY Actin-like ATPase domain 25 253 IPR043129 -
Cone5ag1152 253 Gene3D Actin; Chain A, domain 4 58 149 - -
Cone5ag1152 253 SMART actin_3 1 253 IPR004000 -
Cone5ag1152 253 Pfam Actin 1 253 IPR004000 -
Cone5ag1152 253 FunFam Actin, muscle 58 149 - -
Cone5ag1152 253 PRINTS Actin signature 18 37 IPR004000 -
Cone5ag1152 253 PRINTS Actin signature 114 130 IPR004000 -
Cone5ag1152 253 Gene3D - 1 247 - -
Cone5ag1152 253 SUPERFAMILY Actin-like ATPase domain 1 31 IPR043129 -
Cone5ag1152 253 Gene3D - 16 216 - -
Cone5ag1152 253 FunFam Actin, alpha skeletal muscle 14 75 - -
Cone5ag1152 253 CDD NBD_sugar-kinase_HSP70_actin 1 59 - -
Cone5ag1152 253 FunFam Major actin 135 216 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1152 K10355 - - csv:101221679 489.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag1152 Cone-Chr5:5192143 Cone9ag1250 Cone-Chr9:9202192 7.24E-171 dispersed
Cone1ag0645 Cone-Chr1:6178565 Cone5ag1152 Cone-Chr5:5192143 6.86E-174 wgd
Cone1ag1283 Cone-Chr1:56236946 Cone5ag1152 Cone-Chr5:5192143 8.83E-170 wgd
Cone10ag0307 Cone-Chr10:1459597 Cone5ag1152 Cone-Chr5:5192143 9.74E-174 wgd
Cone3ag0336 Cone-Chr3:1708645 Cone5ag1152 Cone-Chr5:5192143 9.74E-174 wgd
Cone5ag0269 Cone-Chr5:1138546 Cone5ag1152 Cone-Chr5:5192143 7.59E-171 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone3ag0092 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 2.7e-215 745.0
Cone3ag0336 . 1 377 Cytoskeleton Gene Families AT2G37620 97.3 3.6e-215 744.6
Cone10ag0307 . 1 377 Cytoskeleton Gene Families AT2G37620 97.3 3.6e-215 744.6
Cone9ag1250 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 5.2e-214 740.7
Cone13ag0532 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 6.8e-214 740.3
Cone12ag0043 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 2.6e-213 738.4
Cone19ag0481 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 3.4e-213 738.0
Cone1ag1283 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 5.7e-213 737.3
Cone5ag0269 . 1 377 Cytoskeleton Gene Families AT2G37620 95.2 9.7e-213 736.5
Cone8ag0044 . 1 377 Cytoskeleton Gene Families AT2G37620 95.2 3.7e-212 734.6
Cone8ag0048 . 1 377 Cytoskeleton Gene Families AT2G37620 95.2 3.7e-212 734.6
Cone1ag0645 . 1 377 Cytoskeleton Gene Families AT2G37620 95.2 8.3e-212 733.4
Cone9ag1264 . 1 377 Cytoskeleton Gene Families AT2G37620 80.9 1.3e-180 629.8
Cone6ag1317 . 1 376 Cytoskeleton Gene Families AT2G37620 80.9 6.6e-177 617.5
Cone5ag1152 . 1 253 Cytoskeleton Gene Families AT2G37620 94.5 3.7e-135 478.8
Cone5ag1153 . 1 103 Cytoskeleton Gene Families AT2G37620 97.1 5.8e-56 215.7
Cone10ag0079 . 1 99 Cytoskeleton Gene Families AT2G37620 94.9 2.5e-51 200.3
Cone3ag0092 . 1 377 Cytoskeleton Gene Families AT5G59370 96.8 1.2e-213 739.6
Cone1ag1283 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 2.0e-213 738.8
Cone19ag0481 . 1 377 Cytoskeleton Gene Families AT5G59370 96.8 3.4e-213 738.0
Cone1ag0645 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 5.7e-213 737.3
Cone3ag0336 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 5.7e-213 737.3
Cone5ag0269 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 5.7e-213 737.3
Cone10ag0307 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 5.7e-213 737.3
Cone13ag0532 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 5.7e-213 737.3
Cone9ag1250 . 1 377 Cytoskeleton Gene Families AT5G59370 95.0 7.0e-211 730.3
Cone12ag0043 . 1 377 Cytoskeleton Gene Families AT5G59370 94.7 3.5e-210 728.0
Cone8ag0044 . 1 377 Cytoskeleton Gene Families AT5G59370 94.7 7.7e-210 726.9
Cone8ag0048 . 1 377 Cytoskeleton Gene Families AT5G59370 94.7 7.7e-210 726.9
Cone9ag1264 . 1 377 Cytoskeleton Gene Families AT5G59370 80.4 1.6e-178 622.9
Cone6ag1317 . 1 376 Cytoskeleton Gene Families AT5G59370 80.3 5.6e-176 614.4
Cone5ag1152 . 1 253 Cytoskeleton Gene Families AT5G59370 94.5 3.1e-134 475.7
Cone5ag1153 . 1 103 Cytoskeleton Gene Families AT5G59370 97.1 5.8e-56 215.7
Cone10ag0079 . 1 99 Cytoskeleton Gene Families AT5G59370 94.9 2.5e-51 200.3
Cone3ag0092 . 1 377 Cytoskeleton Gene Families AT3G46520 97.1 5.2e-214 740.7
Cone1ag1283 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 8.8e-214 740.0
Cone19ag0481 . 1 377 Cytoskeleton Gene Families AT3G46520 97.1 1.5e-213 739.2
Cone1ag0645 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 2.6e-213 738.4
Cone3ag0336 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 2.6e-213 738.4
Cone5ag0269 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 2.6e-213 738.4
Cone10ag0307 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 2.6e-213 738.4
Cone13ag0532 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 2.6e-213 738.4
Cone9ag1250 . 1 377 Cytoskeleton Gene Families AT3G46520 95.2 3.1e-211 731.5
Cone12ag0043 . 1 377 Cytoskeleton Gene Families AT3G46520 95.0 1.6e-210 729.2
Cone8ag0044 . 1 377 Cytoskeleton Gene Families AT3G46520 94.4 2.2e-209 725.3
Cone8ag0048 . 1 377 Cytoskeleton Gene Families AT3G46520 94.4 2.2e-209 725.3
Cone9ag1264 . 1 377 Cytoskeleton Gene Families AT3G46520 80.6 7.1e-179 624.0
Cone6ag1317 . 1 376 Cytoskeleton Gene Families AT3G46520 80.6 2.5e-176 615.5
Cone5ag1152 . 1 253 Cytoskeleton Gene Families AT3G46520 94.9 1.4e-134 476.9
Cone5ag1153 . 1 103 Cytoskeleton Gene Families AT3G46520 97.1 5.8e-56 215.7
Cone10ag0079 . 1 99 Cytoskeleton Gene Families AT3G46520 94.9 2.5e-51 200.3
Cone3ag0092 . 1 377 Cytoskeleton Gene Families AT3G12110 97.3 9.4e-216 746.5
Cone13ag0532 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 3.0e-214 741.5
Cone19ag0481 . 1 377 Cytoskeleton Gene Families AT3G12110 96.3 4.0e-214 741.1
Cone9ag1250 . 1 377 Cytoskeleton Gene Families AT3G12110 96.0 2.0e-213 738.8
Cone3ag0336 . 1 377 Cytoskeleton Gene Families AT3G12110 96.0 2.6e-213 738.4
Cone10ag0307 . 1 377 Cytoskeleton Gene Families AT3G12110 96.0 2.6e-213 738.4
Cone12ag0043 . 1 377 Cytoskeleton Gene Families AT3G12110 95.8 9.7e-213 736.5
Cone5ag0269 . 1 377 Cytoskeleton Gene Families AT3G12110 95.2 1.3e-212 736.1
Cone1ag0645 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 3.7e-212 734.6
Cone1ag1283 . 1 377 Cytoskeleton Gene Families AT3G12110 95.2 3.7e-212 734.6
Cone8ag0044 . 1 377 Cytoskeleton Gene Families AT3G12110 95.2 1.4e-211 732.6
Cone8ag0048 . 1 377 Cytoskeleton Gene Families AT3G12110 95.2 1.4e-211 732.6
Cone9ag1264 . 1 377 Cytoskeleton Gene Families AT3G12110 81.4 1.5e-181 632.9
Cone6ag1317 . 1 376 Cytoskeleton Gene Families AT3G12110 81.4 2.3e-177 619.0
Cone5ag1152 . 1 253 Cytoskeleton Gene Families AT3G12110 94.1 3.7e-135 478.8
Cone5ag1153 . 1 103 Cytoskeleton Gene Families AT3G12110 98.1 2.6e-56 216.9
Cone10ag0079 . 1 99 Cytoskeleton Gene Families AT3G12110 96.0 1.1e-51 201.4
Cone12ag0043 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 8.5e-209 723.4
Cone1ag0645 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.5e-208 722.6
Cone9ag1250 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 2.5e-208 721.8
Cone13ag0532 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.5e-208 721.8
Cone3ag0092 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 4.2e-208 721.1
Cone19ag0481 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 9.4e-208 719.9
Cone8ag0044 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.2e-207 719.5
Cone8ag0048 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.2e-207 719.5
Cone3ag0336 . 1 377 Cytoskeleton Gene Families AT3G18780 91.5 2.7e-207 718.4
Cone10ag0307 . 1 377 Cytoskeleton Gene Families AT3G18780 91.5 2.7e-207 718.4
Cone5ag0269 . 1 377 Cytoskeleton Gene Families AT3G18780 90.7 8.8e-206 713.4
Cone1ag1283 . 1 377 Cytoskeleton Gene Families AT3G18780 90.7 2.0e-205 712.2
Cone9ag1264 . 1 377 Cytoskeleton Gene Families AT3G18780 78.5 8.6e-177 617.1
Cone6ag1317 . 1 376 Cytoskeleton Gene Families AT3G18780 78.7 3.1e-174 608.6
Cone5ag1152 . 1 253 Cytoskeleton Gene Families AT3G18780 90.1 3.2e-131 465.7
Cone5ag1153 . 1 103 Cytoskeleton Gene Families AT3G18780 93.2 1.4e-54 211.1
Cone10ag0079 . 1 99 Cytoskeleton Gene Families AT3G18780 87.9 5.8e-48 189.1
Cone12ag0043 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 2.9e-209 724.9
Cone9ag1250 . 1 377 Cytoskeleton Gene Families AT1G49240 92.8 8.5e-209 723.4
Cone3ag0092 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 1.5e-208 722.6
Cone1ag0645 . 1 377 Cytoskeleton Gene Families AT1G49240 92.0 3.2e-208 721.5
Cone8ag0044 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 4.2e-208 721.1
Cone8ag0048 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 4.2e-208 721.1
Cone13ag0532 . 1 377 Cytoskeleton Gene Families AT1G49240 92.0 5.5e-208 720.7
Cone3ag0336 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 9.4e-208 719.9
Cone10ag0307 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 9.4e-208 719.9
Cone19ag0481 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 2.1e-207 718.8
Cone5ag0269 . 1 377 Cytoskeleton Gene Families AT1G49240 91.0 3.0e-206 714.9
Cone1ag1283 . 1 377 Cytoskeleton Gene Families AT1G49240 91.0 6.8e-206 713.8
Cone9ag1264 . 1 377 Cytoskeleton Gene Families AT1G49240 78.8 3.0e-177 618.6
Cone6ag1317 . 1 376 Cytoskeleton Gene Families AT1G49240 79.0 1.1e-174 610.1
Cone5ag1152 . 1 253 Cytoskeleton Gene Families AT1G49240 90.1 3.2e-131 465.7
Cone5ag1153 . 1 103 Cytoskeleton Gene Families AT1G49240 92.2 3.2e-54 209.9
Cone10ag0079 . 1 99 Cytoskeleton Gene Families AT1G49240 88.9 2.0e-48 190.7
Cone9ag1250 . 1 377 Cytoskeleton Gene Families AT5G09810 98.9 1.7e-217 752.3
Cone12ag0043 . 1 377 Cytoskeleton Gene Families AT5G09810 98.7 8.5e-217 750.0
Cone8ag0044 . 1 377 Cytoskeleton Gene Families AT5G09810 98.1 1.2e-215 746.1
Cone8ag0048 . 1 377 Cytoskeleton Gene Families AT5G09810 98.1 1.2e-215 746.1
Cone3ag0092 . 1 377 Cytoskeleton Gene Families AT5G09810 96.6 2.3e-214 741.9
Cone13ag0532 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 5.7e-213 737.3
Cone1ag1283 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 7.5e-213 736.9
Cone3ag0336 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 1.3e-212 736.1
Cone5ag0269 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 1.3e-212 736.1
Cone10ag0307 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 1.3e-212 736.1
Cone19ag0481 . 1 377 Cytoskeleton Gene Families AT5G09810 95.2 1.1e-211 733.0
Cone1ag0645 . 1 377 Cytoskeleton Gene Families AT5G09810 95.0 7.0e-211 730.3
Cone9ag1264 . 1 377 Cytoskeleton Gene Families AT5G09810 83.6 4.3e-184 641.3
Cone6ag1317 . 1 376 Cytoskeleton Gene Families AT5G09810 83.5 8.3e-180 627.1
Cone5ag1152 . 1 253 Cytoskeleton Gene Families AT5G09810 93.3 9.0e-134 474.2
Cone5ag1153 . 1 103 Cytoskeleton Gene Families AT5G09810 98.1 2.6e-56 216.9
Cone10ag0079 . 1 99 Cytoskeleton Gene Families AT5G09810 96.0 1.1e-51 201.4
Cone7ag1163 . 1 131 Cytoskeleton Gene Families AT2G19760 80.2 8.8e-60 226.9
Cone4ag0756 . 1 131 Cytoskeleton Gene Families AT2G19760 78.6 1.7e-58 222.6
Cone7ag0705 . 1 131 Cytoskeleton Gene Families AT2G19760 78.6 2.2e-58 222.2
Cone17ag0127 . 1 129 Cytoskeleton Gene Families AT2G19760 75.2 7.7e-56 213.8
Cone7ag1162 . 1 133 Cytoskeleton Gene Families AT2G19760 74.4 1.4e-54 209.5
Cone7ag0704 . 1 133 Cytoskeleton Gene Families AT2G19760 73.7 2.5e-54 208.8
Cone4ag0755 . 1 133 Cytoskeleton Gene Families AT2G19760 75.2 7.2e-54 207.2
Cone7ag1163 . 1 131 Cytoskeleton Gene Families AT4G29350 80.9 1.5e-59 226.1
Cone7ag0705 . 1 131 Cytoskeleton Gene Families AT4G29350 77.1 2.4e-57 218.8
Cone4ag0756 . 1 131 Cytoskeleton Gene Families AT4G29350 76.3 1.5e-56 216.1
Cone7ag0704 . 1 133 Cytoskeleton Gene Families AT4G29350 75.2 1.5e-56 216.1
Cone4ag0755 . 1 133 Cytoskeleton Gene Families AT4G29350 76.7 4.5e-56 214.5
Cone17ag0127 . 1 131 Cytoskeleton Gene Families AT4G29350 74.8 1.7e-55 212.6
Cone7ag1162 . 1 133 Cytoskeleton Gene Families AT4G29350 74.4 4.2e-54 208.0
Cone7ag1163 . 1 87 Cytoskeleton Gene Families AT5G56600 79.3 2.3e-37 152.1
Cone7ag1162 . 1 133 Cytoskeleton Gene Families AT4G29340 83.6 6.6e-63 237.3
Cone4ag0755 . 1 133 Cytoskeleton Gene Families AT4G29340 83.6 8.7e-63 236.9
Cone7ag0704 . 1 133 Cytoskeleton Gene Families AT4G29340 82.1 1.3e-61 233.0
Cone7ag0705 . 1 131 Cytoskeleton Gene Families AT4G29340 73.9 1.9e-57 219.2
Cone17ag0127 . 1 131 Cytoskeleton Gene Families AT4G29340 73.9 1.9e-57 219.2
Cone7ag1163 . 1 131 Cytoskeleton Gene Families AT4G29340 73.9 9.3e-57 216.9
Cone4ag0756 . 1 131 Cytoskeleton Gene Families AT4G29340 70.9 1.1e-54 209.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276