Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1152 ATGTTTGAGACTTTCAACACTCCTGCTATGTACGTTGCCATCCAGGCTGTTCTTTCCCTCTACGCCAGTGGACGTACAACTGGTATTGTTTTGGACTCTGGAGATGGTGTCAGCCACACTGTCCCCATTTATGAGGGGTATGCCCTCCCGCACGCTATCCTTCGGCTTGACCTTGCAGGCCGTGACCTCACTGATGCCCTTATGAAAATCCTGACCGAGCGTGGCTATTCCTTTACCACCACTGCTGAGCGTGAAATTGTAAGAGACATGAAGGAGAAGCTTGCATATATCGCTCTTGATTATGAGCAAGAACTTGAAACTTCTAAGACTATATCTGCTGTTGAGAAAAGCTATGAATTGCCTGATGGGCAGGTGATTACTATTGGTGCTGAGCGATTCCGTTGTCCGGAAGTTCTTTTCCAGCCATCCATGATCGGAATGGAAGCTGCTGGTATTCATGAAACAACTTACAATTCTATCATGAAGTGTGATGTTGATATTAGGAAGGACTTATACGGAAACATTGTTCTTAGTGGTGGATCTACCATGTTCCCGGGCATTGCTGACAGAATGAGCAAGGAAATTACTGCTTTGGCCCATAGCAGCATGAAAATTAAGGTGGTGGCCCCACCTGAGAGAAAGTACAGTGTCTGGATTGGTGGGTCTATCTTGGCATCTCCCAGCACTTTCCAGCAGATTTGGATTGCGAAAGCAGAGTATGATGAGTCGGGTCCATCAATTGTGCATAGGAAATGCTTTTGA 762 46.19 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTISAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAHSSMKIKVVAPPERKYSVWIGGSILASPSTFQQIWIAKAEYDESGPSIVHRKCF 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5192143 5193347 - Conep05aG0119000.1 Cone5ag1152 438170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1152 253 ProSitePatterns Actins signature 2. 234 242 IPR004001 -
Cone5ag1152 253 PANTHER ACTIN 1 245 IPR004000 GO:0005737(PANTHER)
Cone5ag1152 253 SUPERFAMILY Actin-like ATPase domain 25 253 IPR043129 -
Cone5ag1152 253 Gene3D Actin; Chain A, domain 4 58 149 - -
Cone5ag1152 253 SMART actin_3 1 253 IPR004000 -
Cone5ag1152 253 Pfam Actin 1 253 IPR004000 -
Cone5ag1152 253 FunFam Actin, muscle 58 149 - -
Cone5ag1152 253 PRINTS Actin signature 18 37 IPR004000 -
Cone5ag1152 253 PRINTS Actin signature 114 130 IPR004000 -
Cone5ag1152 253 Gene3D - 1 247 - -
Cone5ag1152 253 SUPERFAMILY Actin-like ATPase domain 1 31 IPR043129 -
Cone5ag1152 253 Gene3D - 16 216 - -
Cone5ag1152 253 FunFam Actin, alpha skeletal muscle 14 75 - -
Cone5ag1152 253 CDD NBD_sugar-kinase_HSP70_actin 1 59 - -
Cone5ag1152 253 FunFam Major actin 135 216 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag1152 Cone-Chr5:5192143 Cone9ag1250 Cone-Chr9:9202192 7.24E-171 dispersed
Cone1ag0645 Cone-Chr1:6178565 Cone5ag1152 Cone-Chr5:5192143 6.86E-174 wgd
Cone1ag1283 Cone-Chr1:56236946 Cone5ag1152 Cone-Chr5:5192143 8.83E-170 wgd
Cone10ag0307 Cone-Chr10:1459597 Cone5ag1152 Cone-Chr5:5192143 9.74E-174 wgd
Cone3ag0336 Cone-Chr3:1708645 Cone5ag1152 Cone-Chr5:5192143 9.74E-174 wgd
Cone5ag0269 Cone-Chr5:1138546 Cone5ag1152 Cone-Chr5:5192143 7.59E-171 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1152 K10355 - csv:101221679 489.96