Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1158 ATGGTTTATTCATCTCTTCCAGCCTATTTAGATCCTCCCAGTTGGCAACAACAGCAAGCAGTCACTCAACAACCAAGGGTTGATGAAAATTCACACCAACTTCTGCATCCGCGACCACTGCTGCCGCCACCAGTACCACCTCATGGTGGTTCAGGGTCGATCAGGCCAGGTTCTATGGCCGATCGAGCCCGGCTAGCCATGTTACCTCAACCGGAGGCAGCTTTGAAGTGTCCGAGGTGTGAATCTACTAATACTAAGTTCTGTTACTTCAATAACTATAACCTTGCACAACACCGACACTTCTGCAAAACATGTCGCCGTTACTGGACTCGAGGTGGTGCCCTAAGGAATGTTCCAGTGGGTGGAGGTTGTCGTAGAAACAAGAAGAACAAAAGCCGTACTCGGTCCAAATCTCCAGCTCAGAGGCAGGTGGGTAATTCAGGCTCGACTCGTTCAAGTCCGTCGAGTACTAAGTGCAACAACATAGATCATGATCAGATGATCGGCAATCCTTTGCCTCCACAAATGCCTCCTCAGTTACCTTTCATGGGGTCTTTGCAAAATTTTACGAGGTATGATGGAGTGGGGAGTAGTTATACTACTGACCTCGGTTTAAACTTTAGTGCTCATGATCAAAATATGAATGCACAAAGTGAAGATGTTGTAGGGTTTCAAATTGGAAGCAATTCAAGTGGAAGCGGTAGATCCATTTTACAACAAAACATTCCTTTCTTAAGCGGGTTATTAGACTCATCAACTGGACTCAATTACCCATTATTTCAAAGTGATCAAAGTATTCATGATGGGTCGTCTGGTGGTATGAATATGGCATCAAATTCTAGGGTTTTTCTGTTGCCTCCAATCAAAATTGAAGAAAACAAAGGCCTGAACCTGACAATTCCAACATCGATGGGTGTCTCAGAAAACAATCAGTTGCTTTGGGGTGGAAATTCTTGGACAGATTTAACAGGTCTCAGCTCTTCTTCAGCTACAAATCTCTTGTAA 1005 44.38 MVYSSLPAYLDPPSWQQQQAVTQQPRVDENSHQLLHPRPLLPPPVPPHGGSGSIRPGSMADRARLAMLPQPEAALKCPRCESTNTKFCYFNNYNLAQHRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKSRTRSKSPAQRQVGNSGSTRSSPSSTKCNNIDHDQMIGNPLPPQMPPQLPFMGSLQNFTRYDGVGSSYTTDLGLNFSAHDQNMNAQSEDVVGFQIGSNSSGSGRSILQQNIPFLSGLLDSSTGLNYPLFQSDQSIHDGSSGGMNMASNSRVFLLPPIKIEENKGLNLTIPTSMGVSENNQLLWGGNSWTDLTGLSSSSATNLL 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5209015 5210517 - Conep05aG0119600.1 Cone5ag1158 438176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1158 334 MobiDBLite consensus disorder prediction 14 53 - -
Cone5ag1158 334 MobiDBLite consensus disorder prediction 137 164 - -
Cone5ag1158 334 ProSiteProfiles Zinc finger Dof-type profile. 75 129 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone5ag1158 334 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 68 208 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag1158 334 MobiDBLite consensus disorder prediction 119 179 - -
Cone5ag1158 334 Pfam Dof domain, zinc finger 74 129 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone5ag1158 334 MobiDBLite consensus disorder prediction 14 30 - -
Cone5ag1158 334 ProSitePatterns Zinc finger Dof-type signature. 77 113 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0933 Cone-Chr4:7790805 Cone5ag1158 Cone-Chr5:5209015 1.88E-06 dispersed
Cone5ag1158 Cone-Chr5:5209015 Cone5ag1208 Cone-Chr5:5520489 2.95E-29 dispersed
Cone1ag0649 Cone-Chr1:6195157 Cone5ag1158 Cone-Chr5:5209015 4.61E-209 wgd
Cone1ag1284 Cone-Chr1:56242528 Cone5ag1158 Cone-Chr5:5209015 3.79E-67 wgd
Cone10ag0305 Cone-Chr10:1446767 Cone5ag1158 Cone-Chr5:5209015 2.09E-51 wgd
Cone13ag1337 Cone-Chr13:9841457 Cone5ag1158 Cone-Chr5:5209015 1.79E-62 wgd
Cone19ag1320 Cone-Chr19:8863235 Cone5ag1158 Cone-Chr5:5209015 1.02E-63 wgd
Cone3ag0333 Cone-Chr3:1692917 Cone5ag1158 Cone-Chr5:5209015 1.48E-55 wgd
Cone5ag0270 Cone-Chr5:1144528 Cone5ag1158 Cone-Chr5:5209015 1.64E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46179 PF01963 TraB 6.60E-17 CL0572 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1158 - - - 0.0