Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1158 ATGGTTTATTCATCTCTTCCAGCCTATTTAGATCCTCCCAGTTGGCAACAACAGCAAGCAGTCACTCAACAACCAAGGGTTGATGAAAATTCACACCAACTTCTGCATCCGCGACCACTGCTGCCGCCACCAGTACCACCTCATGGTGGTTCAGGGTCGATCAGGCCAGGTTCTATGGCCGATCGAGCCCGGCTAGCCATGTTACCTCAACCGGAGGCAGCTTTGAAGTGTCCGAGGTGTGAATCTACTAATACTAAGTTCTGTTACTTCAATAACTATAACCTTGCACAACACCGACACTTCTGCAAAACATGTCGCCGTTACTGGACTCGAGGTGGTGCCCTAAGGAATGTTCCAGTGGGTGGAGGTTGTCGTAGAAACAAGAAGAACAAAAGCCGTACTCGGTCCAAATCTCCAGCTCAGAGGCAGGTGGGTAATTCAGGCTCGACTCGTTCAAGTCCGTCGAGTACTAAGTGCAACAACATAGATCATGATCAGATGATCGGCAATCCTTTGCCTCCACAAATGCCTCCTCAGTTACCTTTCATGGGGTCTTTGCAAAATTTTACGAGGTATGATGGAGTGGGGAGTAGTTATACTACTGACCTCGGTTTAAACTTTAGTGCTCATGATCAAAATATGAATGCACAAAGTGAAGATGTTGTAGGGTTTCAAATTGGAAGCAATTCAAGTGGAAGCGGTAGATCCATTTTACAACAAAACATTCCTTTCTTAAGCGGGTTATTAGACTCATCAACTGGACTCAATTACCCATTATTTCAAAGTGATCAAAGTATTCATGATGGGTCGTCTGGTGGTATGAATATGGCATCAAATTCTAGGGTTTTTCTGTTGCCTCCAATCAAAATTGAAGAAAACAAAGGCCTGAACCTGACAATTCCAACATCGATGGGTGTCTCAGAAAACAATCAGTTGCTTTGGGGTGGAAATTCTTGGACAGATTTAACAGGTCTCAGCTCTTCTTCAGCTACAAATCTCTTGTAA 1005 44.38 MVYSSLPAYLDPPSWQQQQAVTQQPRVDENSHQLLHPRPLLPPPVPPHGGSGSIRPGSMADRARLAMLPQPEAALKCPRCESTNTKFCYFNNYNLAQHRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKSRTRSKSPAQRQVGNSGSTRSSPSSTKCNNIDHDQMIGNPLPPQMPPQLPFMGSLQNFTRYDGVGSSYTTDLGLNFSAHDQNMNAQSEDVVGFQIGSNSSGSGRSILQQNIPFLSGLLDSSTGLNYPLFQSDQSIHDGSSGGMNMASNSRVFLLPPIKIEENKGLNLTIPTSMGVSENNQLLWGGNSWTDLTGLSSSSATNLL 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5209015 5210517 - Conep05aG0119600.1 Cone5ag1158 438176

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1158 334 MobiDBLite consensus disorder prediction 14 53 - -
Cone5ag1158 334 MobiDBLite consensus disorder prediction 137 164 - -
Cone5ag1158 334 ProSiteProfiles Zinc finger Dof-type profile. 75 129 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone5ag1158 334 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 68 208 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag1158 334 MobiDBLite consensus disorder prediction 119 179 - -
Cone5ag1158 334 Pfam Dof domain, zinc finger 74 129 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone5ag1158 334 MobiDBLite consensus disorder prediction 14 30 - -
Cone5ag1158 334 ProSitePatterns Zinc finger Dof-type signature. 77 113 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1158 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0933 Cone-Chr4:7790805 Cone5ag1158 Cone-Chr5:5209015 1.88E-06 dispersed
Cone5ag1158 Cone-Chr5:5209015 Cone5ag1208 Cone-Chr5:5520489 2.95E-29 dispersed
Cone1ag0649 Cone-Chr1:6195157 Cone5ag1158 Cone-Chr5:5209015 4.61E-209 wgd
Cone1ag1284 Cone-Chr1:56242528 Cone5ag1158 Cone-Chr5:5209015 3.79E-67 wgd
Cone10ag0305 Cone-Chr10:1446767 Cone5ag1158 Cone-Chr5:5209015 2.09E-51 wgd
Cone13ag1337 Cone-Chr13:9841457 Cone5ag1158 Cone-Chr5:5209015 1.79E-62 wgd
Cone19ag1320 Cone-Chr19:8863235 Cone5ag1158 Cone-Chr5:5209015 1.02E-63 wgd
Cone3ag0333 Cone-Chr3:1692917 Cone5ag1158 Cone-Chr5:5209015 1.48E-55 wgd
Cone5ag0270 Cone-Chr5:1144528 Cone5ag1158 Cone-Chr5:5209015 1.64E-61 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g427 . Blo03g01238 . . . Bpe08g01366 Bma14g00500 Bma07g01538 Cmo13g00132 . Cma01g00595 Cma13g00133 Car01g00540 Car13g00103 Sed08g2509 Cpe05g00913 Cpe20g00813 Bhi08g00258 Tan01g2611 Cmetu12g0765 . Hepe10g1082 . . Cla02g01976 Cam02g2096 Cec02g2134 Cco02g2164 Clacu02g2084 Cmu02g2021 Cre02g2330 Cone1ag0649 Cone5ag1158 . . Lsi02g01364 Csa06g01499 Chy11g01243 Cme11g01283 . . . Bda09g00153 . . . . Sed01g0886 . Cmo20g00451 Cma02g00812 . Car02g00587 . . . Bhi10g00686 Tan05g0376 Cmetu11g2570 . Hepe10g1221 . . Cla03g00153 Cam03g0159 Cec03g0158 Cco03g0165 Clacu03g0162 Cmu03g0779 Cre03g0474 . Csa01g02399 Chy12g00184 Cme12g00200
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone6ag0960 . 1 151 C2C2-Dof Transcription Factor Family AT1G29160 54.7 1.3e-42 170.2
Cone9ag0968 . 1 150 C2C2-Dof Transcription Factor Family AT1G29160 56.5 1.7e-42 169.9
Cone6ag0960 . 1 151 C2C2-Dof Transcription Factor Family AT2G34140 53.9 6.3e-42 167.9
Cone9ag0968 . 1 150 C2C2-Dof Transcription Factor Family AT2G34140 55.7 2.4e-41 166.0
Cone5ag0270 . 1 131 C2C2-Dof Transcription Factor Family AT2G37590 59.7 1.0e-40 164.9
Cone3ag0333 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 60.8 1.5e-39 161.0
Cone10ag0305 . 1 142 C2C2-Dof Transcription Factor Family AT2G37590 60.3 8.1e-38 155.2
Cone1ag0649 . 1 127 C2C2-Dof Transcription Factor Family AT2G37590 56.7 9.0e-37 151.8
Cone5ag1158 . 1 127 C2C2-Dof Transcription Factor Family AT2G37590 57.4 9.0e-37 151.8
Cone5ag0270 . 1 131 C2C2-Dof Transcription Factor Family AT5G02460 58.2 9.5e-41 165.2
Cone1ag1284 . 1 135 C2C2-Dof Transcription Factor Family AT5G02460 56.3 3.1e-39 160.2
Cone5ag1158 . 1 127 C2C2-Dof Transcription Factor Family AT5G02460 58.5 2.0e-38 157.5
Cone1ag0649 . 1 127 C2C2-Dof Transcription Factor Family AT5G02460 55.1 3.7e-37 153.3
Cone6ag1371 . 22 230 C2C2-Dof Transcription Factor Family AT3G50410 50.2 2.7e-49 193.0
Cone5ag0270 . 54 248 C2C2-Dof Transcription Factor Family AT3G55370 50.7 1.4e-41 167.9
Cone19ag0032 . 27 307 C2C2-Dof Transcription Factor Family AT5G60850 50.7 3.6e-40 162.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005685 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46179 PF01963 TraB 6.60E-17 CL0572 Cone TF