Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone5ag1177 | ATGCCAATCTCCAACATTGCTTTTGGAAATGCCACTGAATTTGGCCACCCCGATGTTCTAAGAGCCGGCCTGGCTGAGTTTATCTCGGTCCTCATTTTCATTTTTGCCGGTGAAGGTTCCGGCATGGCTTACAGCTTTTTGACAAGCGATGGGTCAACTACACCGGTGGGGCTAGTAGTCGCCGCTCTAGCCCATGCATTTGCAATATTTGTAGCGGTTTCCGTCGGTGCCAACATTTCAGGAGGACATGTCAACCCAGTAGTGACATTCGGTGCTTTCGTGGGAGGACACATCACCTTCATTAGGACCACTGTCTACTGGATTGCCCAGTTGCTTGGCTCTGTCGTTGCTTGCTTGCTCCTTAAATTTGCAACTGGTGGTTTGACAACATCTGCCTTTGCTCTATCAAGTGGAGTAGGAGTATGGAACGCAGTGGTGCTCGAAATTGTGATGACATTCGGTTTGGTCTACACTTTCTACGCAACGGTGGTGGACCCCAAGAAAGGAAACATTGGGATTATTGCACCCGTTGCAATTGGTTTCATTGTTGGTGCTAACATTCTAGCGGGTGGTGCCTTTGATGGTGCATCAATGAACCCGGCCGCGTCTTTCGGTCCAGCTGTTGTCAGCTGGTCCTGGGACAACCACTGGGTCTACTGGCTCGGTCCATTCATCGGCTCAGCCATTGCAGCCATCGTTTATGAGGTCTTGTTCATTTCCCCGAGCACTCACGAGCAACTCCCTACTACCGACTATTGA | 759 | 50.33 | MPISNIAFGNATEFGHPDVLRAGLAEFISVLIFIFAGEGSGMAYSFLTSDGSTTPVGLVVAALAHAFAIFVAVSVGANISGGHVNPVVTFGAFVGGHITFIRTTVYWIAQLLGSVVACLLLKFATGGLTTSAFALSSGVGVWNAVVLEIVMTFGLVYTFYATVVDPKKGNIGIIAPVAIGFIVGANILAGGAFDGASMNPAASFGPAVVSWSWDNHWVYWLGPFIGSAIAAIVYEVLFISPSTHEQLPTTDY | 252 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 5280620 | 5281568 | - | Conep05aG0121600.1 | Cone5ag1177 | 438195 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone5ag1177 | 252 | CDD | MIP | 21 | 237 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone5ag1177 | 252 | PRINTS | Major intrinsic protein family signature | 102 | 121 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone5ag1177 | 252 | PRINTS | Major intrinsic protein family signature | 21 | 40 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone5ag1177 | 252 | PRINTS | Major intrinsic protein family signature | 180 | 202 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone5ag1177 | 252 | PRINTS | Major intrinsic protein family signature | 217 | 237 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone5ag1177 | 252 | PRINTS | Major intrinsic protein family signature | 147 | 165 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone5ag1177 | 252 | PRINTS | Major intrinsic protein family signature | 65 | 89 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone5ag1177 | 252 | Pfam | Major intrinsic protein | 16 | 234 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone5ag1177 | 252 | Gene3D | Glycerol uptake facilitator protein. | 4 | 252 | IPR023271 | - | |
| Cone5ag1177 | 252 | PANTHER | AQUAPORIN-8 | 4 | 248 | IPR034294 | GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER) | |
| Cone5ag1177 | 252 | SUPERFAMILY | Aquaporin-like | 14 | 244 | IPR023271 | - | |
| Cone5ag1177 | 252 | FunFam | Probable aquaporin TIP1-1 | 4 | 252 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone3ag0242 | Cone-Chr3:1297684 | Cone5ag1177 | Cone-Chr5:5280620 | 7.37E-141 | dispersed | |
| Cone5ag1177 | Cone-Chr5:5280620 | Cone5ag1231 | Cone-Chr5:5673499 | 3.39E-33 | dispersed | |
| Cone1ag0665 | Cone-Chr1:6272582 | Cone5ag1177 | Cone-Chr5:5280620 | 2.76E-166 | wgd | |
| Cone11ag1114 | Cone-Chr11:8673417 | Cone5ag1177 | Cone-Chr5:5280620 | 5.48E-27 | wgd | |
| Cone18ag0465 | Cone-Chr18:2246575 | Cone5ag1177 | Cone-Chr5:5280620 | 8.61E-124 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone5ag1177 | K09873 | - | rcu:8286116 | 429.483 |