Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1180 ATGAAGACTATATTCCATAGATCTTCGCCGCCTCCGAATTCTCCGTCGAGATTTGCATTCACCCCGCCTCGATCTCCACTCCACCACACCTTTTCCGAATCGTTGATGGAGGAGAACATCGAAATTGCTGAATCTATCATCACTAAGTGGGATCCTAATCCGTCATCTGATATTAAGATACACTCTATGTTCCGCGATGATCGATATGAAGCCAAACAGTATCTGAAATCTGTTAAGGATTTGCAGACTGCTATGCATTTCCTTGCTCTCGATATGTCAATCTCTGATAAGATTGTGCATGCTCAGAGATTGATGCAGATTGCCATGCAGAGGCTGCAGAAAGAGTTTTACCTGATTTTATCTTCGAATAGGGACAGTTTGGATCCTGAATCTGTTTCTGGACGCTCATCGAGACAATCGACGGTGACGAGTATCTCTGATTTGGAGGAGGAAGAAGAAGAGCTCGGTTTCGTGAATGAATCGGTTTCTCCAGCTGAGCGAGTTCCTATTACTGTAATGGCGGATTTGAAGGCGATTGCTGATTGTATGATCTCATCCGGATATGGAAAAGAGTGCGTGAAGATTTATAATATGATTAGAAAATCAATCGTTGATGAAGGACTTTATCATCTAGGAGTGGAGAAATTGAGCTCGTCGCAGGTACAGAAAATGGATTGGGAAGTTTTAGCGGCGAAGATGAAGAGCTGGTTGCGCGCTGTGAAAACCGCAGTGAAGACTCTTTTCGACGGAGAGAGAATTCTCTGCGATCACGTCTTTTCGTCTTCTGCTACAATCAGAGAATCTTGCTTCGCAAAAAATGCGAAAGATGGAGCGATGACTCTGTTTGGCTTCCCTCAATTAGTAGCGAAATGTAAGAAAACACCGGAGAAAATTTTCCTCACATTAGATCTCTACCAAGCCATCTCCGATCTCCTGCCGGAGATCGAATTCATCTTCTCCTTCGAATCAACCTCACCCGTCCGATTACAAGCCGTCACATCACTCGTCAAGCTCGGTGAGGCCGTTCGTACTATGCTCACAGATTTCGAATCCGCGATCCAGAAGGACTCGTCCAAATCGCCGGTTCCAAACGGCGGTCTGCATCCACTCACGCGTTACGTGATGAACTACATTTCATTCCTCGCTGAGTATCACGAAATACTTGCCGATATAGTCGCCGACTGGCCTCTAACAGCGCAAGCTCCCTTACCAGAATCCTACTTCTCGAGCGACGAGTCCAGCGAAAATCCAATGACAGTACGATTCGCGTGGCTCATCCTCATCTTACTCTGCAAACTCGACGGCAAAGCAGCGATTTACAAAGACGTGGCTCTCTCTTACATCTTCTTAGCCAATAATCTCCAGTACATCGTCGTAAAGGTCCGTAGCTCAAACCTCAAGTTCCTTGTCGGCCAAGAATGGATTTCGAGGCATGAATCGAAGGTCAAGCAATACGCATCGAATTACGAACGGACGGGATGGAGCAAGGTGATTTCATCGCTGCCGGAAAATCCGACGGCTGAGATTTCGCAAGAGAAGGCGAGGCATCGTTTTGACAGTTTCAACGCAGCGTTTGAAGAAGCATGCAAGAAACAATCATTGTGGGTTATATCCGACCCGAGACTGCGCGATGAGATTAAGGTGTCGTTGAGGAGAAGACTTGGGGCTCTGTACGGCGAGTTTTACGAGATGCATCGGGCCGGGTTTAGACGGGTAACCGGATCGGAGTCTGTGGTGATATTTGCACCAGATGATATAGCCAACTACTTGTCCGATTTGTCCTTCGGGGCTTCTTCAAGTTCGGGGAGTGTTTCCACGTCGGTTTCTTCGTCGGTCGTGTCATCACCGTCGCCGTCTTATCTGAGAGGTTGGTAA 1875 47.09 MKTIFHRSSPPPNSPSRFAFTPPRSPLHHTFSESLMEENIEIAESIITKWDPNPSSDIKIHSMFRDDRYEAKQYLKSVKDLQTAMHFLALDMSISDKIVHAQRLMQIAMQRLQKEFYLILSSNRDSLDPESVSGRSSRQSTVTSISDLEEEEEELGFVNESVSPAERVPITVMADLKAIADCMISSGYGKECVKIYNMIRKSIVDEGLYHLGVEKLSSSQVQKMDWEVLAAKMKSWLRAVKTAVKTLFDGERILCDHVFSSSATIRESCFAKNAKDGAMTLFGFPQLVAKCKKTPEKIFLTLDLYQAISDLLPEIEFIFSFESTSPVRLQAVTSLVKLGEAVRTMLTDFESAIQKDSSKSPVPNGGLHPLTRYVMNYISFLAEYHEILADIVADWPLTAQAPLPESYFSSDESSENPMTVRFAWLILILLCKLDGKAAIYKDVALSYIFLANNLQYIVVKVRSSNLKFLVGQEWISRHESKVKQYASNYERTGWSKVISSLPENPTAEISQEKARHRFDSFNAAFEEACKKQSLWVISDPRLRDEIKVSLRRRLGALYGEFYEMHRAGFRRVTGSESVVIFAPDDIANYLSDLSFGASSSSGSVSTSVSSSVVSSPSPSYLRGW 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5298449 5300323 + Conep05aG0122000.1 Cone5ag1180 438198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1180 624 SUPERFAMILY Cullin repeat-like 56 593 IPR016159 -
Cone5ag1180 624 MobiDBLite consensus disorder prediction 601 624 - -
Cone5ag1180 624 FunFam Exocyst subunit Exo70 family protein 57 602 - -
Cone5ag1180 624 PANTHER EXOCYST COMPLEX PROTEIN EXO70 36 596 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Cone5ag1180 624 MobiDBLite consensus disorder prediction 601 618 - -
Cone5ag1180 624 Gene3D Exocyst complex component Exo70 45 602 - -
Cone5ag1180 624 Pfam Exo70 exocyst complex subunit C-terminal 234 592 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Cone5ag1180 624 MobiDBLite consensus disorder prediction 125 144 - -
Cone5ag1180 624 MobiDBLite consensus disorder prediction 1 23 - -
Cone5ag1180 624 Pfam Exocyst complex component Exo70 N-terminal 40 121 - -
Cone5ag1180 624 MobiDBLite consensus disorder prediction 125 146 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1312 Cone-Chr13:9740457 Cone5ag1180 Cone-Chr5:5298449 1.94E-187 dispersed
Cone5ag1180 Cone-Chr5:5298449 Cone6ag1242 Cone-Chr6:9899471 2.13E-60 dispersed
Cone1ag0674 Cone-Chr1:6316183 Cone5ag1180 Cone-Chr5:5298449 0 wgd
Cone10ag0284 Cone-Chr10:1348849 Cone5ag1180 Cone-Chr5:5298449 1.03E-207 wgd
Cone11ag1266 Cone-Chr11:9409923 Cone5ag1180 Cone-Chr5:5298449 2.13E-258 wgd
Cone11ag1101 Cone-Chr11:8582489 Cone5ag1180 Cone-Chr5:5298449 1.28E-180 wgd
Cone18ag0474 Cone-Chr18:2306911 Cone5ag1180 Cone-Chr5:5298449 1.47E-180 wgd
Cone18ag0321 Cone-Chr18:1595951 Cone5ag1180 Cone-Chr5:5298449 6.60E-261 wgd
Cone19ag1300 Cone-Chr19:8771675 Cone5ag1180 Cone-Chr5:5298449 2.91E-195 wgd
Cone3ag0313 Cone-Chr3:1592344 Cone5ag1180 Cone-Chr5:5298449 3.80E-203 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1180 K07195 - mdm:103447762 723.005