Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1180 ATGAAGACTATATTCCATAGATCTTCGCCGCCTCCGAATTCTCCGTCGAGATTTGCATTCACCCCGCCTCGATCTCCACTCCACCACACCTTTTCCGAATCGTTGATGGAGGAGAACATCGAAATTGCTGAATCTATCATCACTAAGTGGGATCCTAATCCGTCATCTGATATTAAGATACACTCTATGTTCCGCGATGATCGATATGAAGCCAAACAGTATCTGAAATCTGTTAAGGATTTGCAGACTGCTATGCATTTCCTTGCTCTCGATATGTCAATCTCTGATAAGATTGTGCATGCTCAGAGATTGATGCAGATTGCCATGCAGAGGCTGCAGAAAGAGTTTTACCTGATTTTATCTTCGAATAGGGACAGTTTGGATCCTGAATCTGTTTCTGGACGCTCATCGAGACAATCGACGGTGACGAGTATCTCTGATTTGGAGGAGGAAGAAGAAGAGCTCGGTTTCGTGAATGAATCGGTTTCTCCAGCTGAGCGAGTTCCTATTACTGTAATGGCGGATTTGAAGGCGATTGCTGATTGTATGATCTCATCCGGATATGGAAAAGAGTGCGTGAAGATTTATAATATGATTAGAAAATCAATCGTTGATGAAGGACTTTATCATCTAGGAGTGGAGAAATTGAGCTCGTCGCAGGTACAGAAAATGGATTGGGAAGTTTTAGCGGCGAAGATGAAGAGCTGGTTGCGCGCTGTGAAAACCGCAGTGAAGACTCTTTTCGACGGAGAGAGAATTCTCTGCGATCACGTCTTTTCGTCTTCTGCTACAATCAGAGAATCTTGCTTCGCAAAAAATGCGAAAGATGGAGCGATGACTCTGTTTGGCTTCCCTCAATTAGTAGCGAAATGTAAGAAAACACCGGAGAAAATTTTCCTCACATTAGATCTCTACCAAGCCATCTCCGATCTCCTGCCGGAGATCGAATTCATCTTCTCCTTCGAATCAACCTCACCCGTCCGATTACAAGCCGTCACATCACTCGTCAAGCTCGGTGAGGCCGTTCGTACTATGCTCACAGATTTCGAATCCGCGATCCAGAAGGACTCGTCCAAATCGCCGGTTCCAAACGGCGGTCTGCATCCACTCACGCGTTACGTGATGAACTACATTTCATTCCTCGCTGAGTATCACGAAATACTTGCCGATATAGTCGCCGACTGGCCTCTAACAGCGCAAGCTCCCTTACCAGAATCCTACTTCTCGAGCGACGAGTCCAGCGAAAATCCAATGACAGTACGATTCGCGTGGCTCATCCTCATCTTACTCTGCAAACTCGACGGCAAAGCAGCGATTTACAAAGACGTGGCTCTCTCTTACATCTTCTTAGCCAATAATCTCCAGTACATCGTCGTAAAGGTCCGTAGCTCAAACCTCAAGTTCCTTGTCGGCCAAGAATGGATTTCGAGGCATGAATCGAAGGTCAAGCAATACGCATCGAATTACGAACGGACGGGATGGAGCAAGGTGATTTCATCGCTGCCGGAAAATCCGACGGCTGAGATTTCGCAAGAGAAGGCGAGGCATCGTTTTGACAGTTTCAACGCAGCGTTTGAAGAAGCATGCAAGAAACAATCATTGTGGGTTATATCCGACCCGAGACTGCGCGATGAGATTAAGGTGTCGTTGAGGAGAAGACTTGGGGCTCTGTACGGCGAGTTTTACGAGATGCATCGGGCCGGGTTTAGACGGGTAACCGGATCGGAGTCTGTGGTGATATTTGCACCAGATGATATAGCCAACTACTTGTCCGATTTGTCCTTCGGGGCTTCTTCAAGTTCGGGGAGTGTTTCCACGTCGGTTTCTTCGTCGGTCGTGTCATCACCGTCGCCGTCTTATCTGAGAGGTTGGTAA 1875 47.09 MKTIFHRSSPPPNSPSRFAFTPPRSPLHHTFSESLMEENIEIAESIITKWDPNPSSDIKIHSMFRDDRYEAKQYLKSVKDLQTAMHFLALDMSISDKIVHAQRLMQIAMQRLQKEFYLILSSNRDSLDPESVSGRSSRQSTVTSISDLEEEEEELGFVNESVSPAERVPITVMADLKAIADCMISSGYGKECVKIYNMIRKSIVDEGLYHLGVEKLSSSQVQKMDWEVLAAKMKSWLRAVKTAVKTLFDGERILCDHVFSSSATIRESCFAKNAKDGAMTLFGFPQLVAKCKKTPEKIFLTLDLYQAISDLLPEIEFIFSFESTSPVRLQAVTSLVKLGEAVRTMLTDFESAIQKDSSKSPVPNGGLHPLTRYVMNYISFLAEYHEILADIVADWPLTAQAPLPESYFSSDESSENPMTVRFAWLILILLCKLDGKAAIYKDVALSYIFLANNLQYIVVKVRSSNLKFLVGQEWISRHESKVKQYASNYERTGWSKVISSLPENPTAEISQEKARHRFDSFNAAFEEACKKQSLWVISDPRLRDEIKVSLRRRLGALYGEFYEMHRAGFRRVTGSESVVIFAPDDIANYLSDLSFGASSSSGSVSTSVSSSVVSSPSPSYLRGW 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5298449 5300323 + Conep05aG0122000.1 Cone5ag1180 438198

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1180 624 SUPERFAMILY Cullin repeat-like 56 593 IPR016159 -
Cone5ag1180 624 MobiDBLite consensus disorder prediction 601 624 - -
Cone5ag1180 624 FunFam Exocyst subunit Exo70 family protein 57 602 - -
Cone5ag1180 624 PANTHER EXOCYST COMPLEX PROTEIN EXO70 36 596 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Cone5ag1180 624 MobiDBLite consensus disorder prediction 601 618 - -
Cone5ag1180 624 Gene3D Exocyst complex component Exo70 45 602 - -
Cone5ag1180 624 Pfam Exo70 exocyst complex subunit C-terminal 234 592 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Cone5ag1180 624 MobiDBLite consensus disorder prediction 125 144 - -
Cone5ag1180 624 MobiDBLite consensus disorder prediction 1 23 - -
Cone5ag1180 624 Pfam Exocyst complex component Exo70 N-terminal 40 121 - -
Cone5ag1180 624 MobiDBLite consensus disorder prediction 125 146 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1180 K07195 - - mdm:103447762 723.005
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1312 Cone-Chr13:9740457 Cone5ag1180 Cone-Chr5:5298449 1.94E-187 dispersed
Cone5ag1180 Cone-Chr5:5298449 Cone6ag1242 Cone-Chr6:9899471 2.13E-60 dispersed
Cone1ag0674 Cone-Chr1:6316183 Cone5ag1180 Cone-Chr5:5298449 0 wgd
Cone10ag0284 Cone-Chr10:1348849 Cone5ag1180 Cone-Chr5:5298449 1.03E-207 wgd
Cone11ag1266 Cone-Chr11:9409923 Cone5ag1180 Cone-Chr5:5298449 2.13E-258 wgd
Cone11ag1101 Cone-Chr11:8582489 Cone5ag1180 Cone-Chr5:5298449 1.28E-180 wgd
Cone18ag0474 Cone-Chr18:2306911 Cone5ag1180 Cone-Chr5:5298449 1.47E-180 wgd
Cone18ag0321 Cone-Chr18:1595951 Cone5ag1180 Cone-Chr5:5298449 6.60E-261 wgd
Cone19ag1300 Cone-Chr19:8771675 Cone5ag1180 Cone-Chr5:5298449 2.91E-195 wgd
Cone3ag0313 Cone-Chr3:1592344 Cone5ag1180 Cone-Chr5:5298449 3.80E-203 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g377 . . Bda02g00802 Bda09g01492 Bpe01g00153 . Bma14g00483 . . . . . . . Sed13g1351 Cpe05g00891 . Bhi08g00343 Tan01g2524 Cmetu12g0712 . . . Lcy11g0247 Cla02g01331 Cam02g1412 Cec02g1430 Cco02g1463 Clacu02g1391 Cmu02g1351 Cre02g1670 Cone1ag0674 Cone5ag1180 Cone18ag0321 Cone11ag1266 . Csa06g01715 . Cme11g01259 Blo13g01090 Blo14g00136 Bda07g00609 . Bpe08g00122 Bpe11g00785 Bma07g00116 Bma11g00137 Sed01g0928 Cmo02g00840 Cmo20g00472 Cma02g00839 Cma20g00434 . . . . Bhi10g00657 Tan05g0340 Cmetu11g2447 . Hepe08g0821 . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone1ag1422 . 1 649 EXO70 exocyst subunit family AT5G03540 73.8 5.4e-275 944.1
Cone11ag0966 . 12 662 EXO70 exocyst subunit family AT5G03540 73.9 1.6e-274 942.6
Cone5ag0416 . 10 649 EXO70 exocyst subunit family AT5G03540 74.8 1.3e-273 939.5
Cone13ag1144 . 1 628 EXO70 exocyst subunit family AT5G03540 70.9 3.6e-263 904.8
Cone19ag1123 . 1 628 EXO70 exocyst subunit family AT5G03540 69.8 1.3e-257 886.3
Cone13ag1144 . 1 628 EXO70 exocyst subunit family AT5G52340 80.5 3.7e-297 1017.7
Cone19ag1123 . 1 628 EXO70 exocyst subunit family AT5G52340 78.2 2.4e-288 988.4
Cone1ag1422 . 1 649 EXO70 exocyst subunit family AT5G52340 72.1 5.5e-269 924.1
Cone11ag0966 . 12 662 EXO70 exocyst subunit family AT5G52340 71.3 8.8e-267 916.8
Cone5ag0416 . 12 649 EXO70 exocyst subunit family AT5G52340 72.3 4.8e-265 911.0
Cone13ag1144 . 145 621 EXO70 exocyst subunit family AT5G52350 64.3 1.5e-175 613.6
Cone19ag1123 . 145 621 EXO70 exocyst subunit family AT5G52350 62.6 3.2e-170 595.9
Cone5ag0416 . 147 649 EXO70 exocyst subunit family AT5G52350 58.8 1.4e-165 580.5
Cone11ag0966 . 150 662 EXO70 exocyst subunit family AT5G52350 58.8 3.1e-165 579.3
Cone1ag1422 . 147 649 EXO70 exocyst subunit family AT5G52350 58.9 3.4e-164 575.9
Cone1ag0768 . 1 617 EXO70 exocyst subunit family AT5G58430 68.8 5.0e-254 874.4
Cone5ag1050 . 1 621 EXO70 exocyst subunit family AT5G58430 69.5 6.5e-254 874.0
Cone1ag0768 . 1 616 EXO70 exocyst subunit family AT1G07000 53.0 2.8e-177 619.4
Cone5ag1050 . 1 620 EXO70 exocyst subunit family AT1G07000 52.8 5.7e-175 611.7
Cone16ag1017 . 53 682 EXO70 exocyst subunit family AT5G13990 53.9 4.6e-184 642.1
Cone2ag0024 . 72 686 EXO70 exocyst subunit family AT5G13990 53.9 1.2e-179 627.5
Cone20ag1348 . 9 609 EXO70 exocyst subunit family AT1G72470 63.7 9.0e-211 730.7
Cone17ag0057 . 9 609 EXO70 exocyst subunit family AT1G72470 64.0 2.2e-209 726.1
Cone17ag0057 . 9 606 EXO70 exocyst subunit family AT1G54090 61.5 7.2e-205 711.1
Cone20ag1348 . 9 606 EXO70 exocyst subunit family AT1G54090 60.4 6.8e-203 704.5
Cone20ag1348 . 9 607 EXO70 exocyst subunit family AT3G14090 61.8 1.5e-210 729.9
Cone17ag0057 . 9 607 EXO70 exocyst subunit family AT3G14090 62.0 7.5e-210 727.6
Cone13ag0215 . 13 660 EXO70 exocyst subunit family AT5G50380 64.2 2.0e-232 802.7
Cone19ag0206 . 13 660 EXO70 exocyst subunit family AT5G50380 63.4 1.2e-229 793.5
Cone17ag1082 . 10 681 EXO70 exocyst subunit family AT4G31540 71.8 6.8e-289 990.3
Cone20ag0630 . 10 671 EXO70 exocyst subunit family AT4G31540 72.5 4.4e-288 987.6
Cone1ag0674 . 11 584 EXO70 exocyst subunit family AT3G55150 51.6 3.3e-160 562.8
Cone11ag1101 . 1 559 EXO70 exocyst subunit family AT3G55150 50.6 8.6e-153 538.1
Cone1ag0674 . 8 593 EXO70 exocyst subunit family AT2G39380 51.4 3.4e-165 579.3
Cone5ag1180 . 23 606 EXO70 exocyst subunit family AT2G39380 50.9 1.2e-162 570.9
Cone11ag1101 . 1 568 EXO70 exocyst subunit family AT2G39380 50.9 3.7e-156 549.3
Cone10ag0284 . 36 621 EXO70 exocyst subunit family AT3G09520 55.1 5.3e-179 625.2
Cone3ag0313 . 36 627 EXO70 exocyst subunit family AT3G09520 56.0 5.8e-178 621.7
Cone13ag1312 . 49 611 EXO70 exocyst subunit family AT3G09520 55.4 5.8e-170 595.1
Cone19ag1300 . 49 613 EXO70 exocyst subunit family AT3G09520 54.3 1.8e-166 583.6
Cone1ag0674 . 2 592 EXO70 exocyst subunit family AT5G59730 50.4 1.5e-160 563.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001818 3 2 3 3 3 2 0 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 2 2 3 3 2 2 2 0 68