Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone5ag1195 | ATGGAGCAATCAGACACTCCATTCTCCAAGCTGTCATCAACAACAACAACAGCAGCCCACTTACCACCATTTCTGCGAGATTCGCGCGGTTCACTAGAAGTCTTCACTCCTTCATCAACCTACTCGAACCCACCGGACGAATCAGTTTTCCTGTCAAATATAACATGGCAGAGCTGGGCCGAACCACGTCACATCTCCGAACCCGAACCACCCAACATTTCTTCCAAATCCTTCAAAGCCACGGAGGAGATAACTCCATGGATGGCCCTAAATGATGACCCGGATTCTTACCCGGTTCCTGCACATAAGACCATCTCAGCGATTGTCAGTGAAAAATCAACGAGGGCTCAGACGCCGTTATCGCCAGGCCGCGTGGGAGCCGCGGCTCAACGAGCGGCCGAGTGGGGCTTGGTTCTGAAGACGGATATAGAGACCGGTAAGCCTCAAGGAGTGACGGTTCGGACTTCTGGGGGAGATGAACCGAACAAACCGGATAGGAGGACGTCGAATAACTCGGTGAGGAGTTCGGGCGACAATTCGGATGAAGGTGGGTCGAATGAGAGAGGGATTCCTAGAGCGTCGGAAGACTTGAAGGACGTCTTGTCGACTTTCCAGCAGACGTTTGTCGTTTCGGATGGGACGAAATCCGATTACCCGATCATGTATGCGAGTGCGGGGTTCTTTAACATGACGGGTTACTCTTCCAAGGAAGTCATAGGACGAAATTGTCGGTTCTTACAGGGACCGGATACTGACCCGGAAGATTTGAGGAAGATAAGGGAAGCTTTACAGGGTGGGAGAAGTTATTGTGGAAGGTTGTTGAATTACAAGAAAGATGGGACGCCCTTTTGGAATCTACTTACCATTGCACCTGTCAAGGATGAATCTGGCAATGTCATCAAATTTATCGGAATGCAAGTGGAAGTGAGCAAGCACACGGAGGGTTCGAAAGATAAGATGCTCCGTCCCAACGGACTACCCGAGTCCTTGATCAAATATGATTCGCGTCAAAAGGAGATGGCCACGAGTTCGGTAACCGAACTAATACATGCTGTAAAAAGGCCCCGTTCACTTAGTTTATCAACAAACCGTCCTTATGTTAGAAAATCCGGCGATAAGAAAGAGGAAAGAGCCGGAATCCCGGCCCCACCAAGACGAAATTCGCATGCTGGAATCAGAAGTCCGATGCAGAAGATCAGTGAATTCCCCGATAAGAAACAAAAAAAACTCAAGCGTCATTCTTTCATAGGGATTGTTTGGAAAAGTCGATTGAATGTCGAAAAGTTTGAAGATGGAATGAGACTTGATAATGATGAGAGCGATGGGAATGAACGGCTGGGAAGTGATGATGAGAGGCCGGATAGTTTGGATGATAAAGAAAGACAAAAGGAGAAGAGAAAGGGTATTGATTTAGCTACGACACTTGAACGGATTGAGAAAAACTTTGTCATTACCGATCCAAGGCTTCCAGACAATCCCATTATATTTGCATCGGATAGCTTCTTGGAACTTTCGGAGTATAGCCGCGAAGAAATACTGGGAAGAAATTGCAGGTTTTTGCAAGGACCGGAAACAGATCCGGCCACTGTTAGAAAGATACGGGAGGCGATCGACAACCAAACTGAAGTTACTGTCCAGCTTATTAACTACACAAAAAGCGGTAAAAAATTCTGGAATGTGTTTCATCTACAACCGATGCGTGATCAAAAGGGTGAAGTGCAGTATTTTATAGGAGTACAACTTGACGGTAGTCAGCATATTGAGCCGCTCAATAGTTGCATTCTAGGAGAAACCGGGAAAGAAAGCGAAAAAACGGTCAAAGAAACAGCAAAAAATGTCGATGTAGCCGTTAGAGAACTCCCGGATGCTAATTCGACACCTGAAGATTTGTGGATCAACCATTCCAAGTTGGTTCATCCTAAACCTCATCGGAGAGACAGTCCCTCTTGGAAAGCTATTCAGAAGATTCTAGCTAGCGGTGAACAGATCGGCTTGAAACATTTTAAACCGATTAAACCTTTGGGTTCGGGCGATACCGGCTGCGTTCATTTGGTAGAATTGTGTGGGACCGGTCTCTACTTTGCCATGAAGGCTATGGACAAGAGTGTTATGATTAGCCGAAACAAGGTGCATAGAGCTTGTATAGAGAGGGAAATCCTCGACATGTTAGATCATCCTTTCCTTCTTGCACTATATGCATCATTTCAGACAAAAACTCATGTTTGTTTAATAACCGATTACTGTCCGGGCGGAGAACTCTTTATGCTTTTGGATCGACAACCTACGAAGGTCCTTAAAGAAGACGCTGTCAGATTTTATGCTGCTGAGGTTATTGTTGCTTTGGAGTACCTTCACTGTCAAGGGATAATTTACAGAGACTTGAAGCCTGAGAACATCTTACTTCAGGGCAATGGACATGTCTCCTTAACGGATTTCGATCTTTCATGTTTAACTTATTGCAGACCCCAACTTTTGTTTCCAGATGCATATGAGAAGAAAAAGAAACACAAGGGCCAACAGAATCCGATCTTTATTGCCGAACCAATGAGAGCATCAAACTCATTTGTCGGCACAGAAGAGTATATCGCTCCGGAAATCATAAGCGGGGCTGGCCATACAAGTGCAGTTGACTGGTGGGCACTTGGCATTCTTTTATACGAAATGCTTTACGGGTACACACCGTTTCGAGGGAAAACGAGGCAGAAGACATTTGCCAACATTCTTCACAAAGATCTCAAATTTCCCAGAAGCATAACGGTAAGTTTGAGTGCAAAGCAGTTGATGTATAGGCTACTTCATAGGGACCCTTTGAACAGATTGGGATCAGTAGAAGGAGCTTATGAAATCAAACAACACCCTTTCTTTCATGGTATCAATTGGGCACTTGTTCGCTCCGAGAATCCTCCAGTGCTTGAAGTACCTGTATTTGGGAAGACCGAAGGTGAGAAAGATGTTAGTTCAATTGATCCTGGGTTGCAGGATCTGCAAATCAATGTCTTCTGA | 3003 | 45.42 | MEQSDTPFSKLSSTTTTAAHLPPFLRDSRGSLEVFTPSSTYSNPPDESVFLSNITWQSWAEPRHISEPEPPNISSKSFKATEEITPWMALNDDPDSYPVPAHKTISAIVSEKSTRAQTPLSPGRVGAAAQRAAEWGLVLKTDIETGKPQGVTVRTSGGDEPNKPDRRTSNNSVRSSGDNSDEGGSNERGIPRASEDLKDVLSTFQQTFVVSDGTKSDYPIMYASAGFFNMTGYSSKEVIGRNCRFLQGPDTDPEDLRKIREALQGGRSYCGRLLNYKKDGTPFWNLLTIAPVKDESGNVIKFIGMQVEVSKHTEGSKDKMLRPNGLPESLIKYDSRQKEMATSSVTELIHAVKRPRSLSLSTNRPYVRKSGDKKEERAGIPAPPRRNSHAGIRSPMQKISEFPDKKQKKLKRHSFIGIVWKSRLNVEKFEDGMRLDNDESDGNERLGSDDERPDSLDDKERQKEKRKGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELSEYSREEILGRNCRFLQGPETDPATVRKIREAIDNQTEVTVQLINYTKSGKKFWNVFHLQPMRDQKGEVQYFIGVQLDGSQHIEPLNSCILGETGKESEKTVKETAKNVDVAVRELPDANSTPEDLWINHSKLVHPKPHRRDSPSWKAIQKILASGEQIGLKHFKPIKPLGSGDTGCVHLVELCGTGLYFAMKAMDKSVMISRNKVHRACIEREILDMLDHPFLLALYASFQTKTHVCLITDYCPGGELFMLLDRQPTKVLKEDAVRFYAAEVIVALEYLHCQGIIYRDLKPENILLQGNGHVSLTDFDLSCLTYCRPQLLFPDAYEKKKKHKGQQNPIFIAEPMRASNSFVGTEEYIAPEIISGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPRSITVSLSAKQLMYRLLHRDPLNRLGSVEGAYEIKQHPFFHGINWALVRSENPPVLEVPVFGKTEGEKDVSSIDPGLQDLQINVF | 1000 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 5398973 | 5405530 | - | Conep05aG0123500.1 | Cone5ag1195 | 438213 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone5ag1195 | 1000 | ProSiteProfiles | PAS repeat profile. | 471 | 540 | IPR000014 | - | |
Cone5ag1195 | 1000 | MobiDBLite | consensus disorder prediction | 367 | 382 | - | - | |
Cone5ag1195 | 1000 | PANTHER | FLIPPASE KINASE 1-RELATED | 597 | 973 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
Cone5ag1195 | 1000 | Pfam | PAS domain | 490 | 582 | IPR000014 | - | |
Cone5ag1195 | 1000 | Pfam | PAS domain | 214 | 310 | IPR000014 | - | |
Cone5ag1195 | 1000 | Gene3D | Phosphorylase Kinase; domain 1 | 667 | 987 | - | - | |
Cone5ag1195 | 1000 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 483 | 582 | IPR035965 | - | |
Cone5ag1195 | 1000 | ProSiteProfiles | Protein kinase domain profile. | 668 | 955 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cone5ag1195 | 1000 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cone5ag1195 | 1000 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Cone5ag1195 | 1000 | ProSitePatterns | Protein kinases ATP-binding region signature. | 674 | 697 | IPR017441 | GO:0005524(InterPro) | |
Cone5ag1195 | 1000 | CDD | PAS | 482 | 582 | IPR000014 | - | |
Cone5ag1195 | 1000 | Gene3D | PAS domain | 455 | 620 | - | - | |
Cone5ag1195 | 1000 | NCBIfam | PAS domain S-box protein | 492 | 582 | IPR000014 | - | |
Cone5ag1195 | 1000 | NCBIfam | PAS domain S-box protein | 219 | 313 | IPR000014 | - | |
Cone5ag1195 | 1000 | ProSiteProfiles | PAS repeat profile. | 193 | 266 | IPR000014 | - | |
Cone5ag1195 | 1000 | ProSiteProfiles | PAC domain profile. | 541 | 595 | IPR000700 | - | |
Cone5ag1195 | 1000 | FunFam | LOV domain-containing protein | 667 | 751 | - | - | |
Cone5ag1195 | 1000 | Gene3D | Transferase(Phosphotransferase) domain 1 | 752 | 978 | - | - | |
Cone5ag1195 | 1000 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 216 | 306 | IPR035965 | - | |
Cone5ag1195 | 1000 | MobiDBLite | consensus disorder prediction | 359 | 407 | - | - | |
Cone5ag1195 | 1000 | MobiDBLite | consensus disorder prediction | 433 | 468 | - | - | |
Cone5ag1195 | 1000 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 789 | 801 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cone5ag1195 | 1000 | SMART | serkin_6 | 668 | 955 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cone5ag1195 | 1000 | CDD | PAS | 220 | 309 | IPR000014 | - | |
Cone5ag1195 | 1000 | SMART | pas_2 | 469 | 538 | IPR000014 | - | |
Cone5ag1195 | 1000 | SMART | pas_2 | 195 | 264 | IPR000014 | - | |
Cone5ag1195 | 1000 | ProSiteProfiles | PAC domain profile. | 267 | 321 | IPR000700 | - | |
Cone5ag1195 | 1000 | CDD | STKc_phototropin_like | 666 | 974 | - | - | |
Cone5ag1195 | 1000 | Gene3D | PAS domain | 207 | 364 | - | - | |
Cone5ag1195 | 1000 | SMART | pac_2 | 544 | 586 | IPR001610 | - | |
Cone5ag1195 | 1000 | SMART | pac_2 | 270 | 312 | IPR001610 | - | |
Cone5ag1195 | 1000 | SUPERFAMILY | Protein kinase-like (PK-like) | 646 | 975 | IPR011009 | - | |
Cone5ag1195 | 1000 | FunFam | Putative LOV domain-containing protein | 207 | 363 | - | - | |
Cone5ag1195 | 1000 | MobiDBLite | consensus disorder prediction | 168 | 183 | - | - | |
Cone5ag1195 | 1000 | FunFam | Putative LOV domain-containing protein | 752 | 967 | - | - | |
Cone5ag1195 | 1000 | FunFam | LOV domain-containing protein | 456 | 620 | - | - | |
Cone5ag1195 | 1000 | Pfam | Protein kinase domain | 671 | 955 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cone5ag1195 | 1000 | MobiDBLite | consensus disorder prediction | 146 | 191 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone13ag0984 | Cone-Chr13:8343150 | Cone5ag1195 | Cone-Chr5:5398973 | 1.89E-41 | dispersed | |
Cone19ag0974 | Cone-Chr19:7385983 | Cone5ag1195 | Cone-Chr5:5398973 | 6.92E-57 | dispersed | |
Cone1ag1396 | Cone-Chr1:56734111 | Cone5ag1195 | Cone-Chr5:5398973 | 6.22E-54 | dispersed | |
Cone3ag1262 | Cone-Chr3:31437606 | Cone5ag1195 | Cone-Chr5:5398973 | 0 | dispersed | |
Cone5ag0387 | Cone-Chr5:1653954 | Cone5ag1195 | Cone-Chr5:5398973 | 3.82E-51 | dispersed | |
Cone5ag1195 | Cone-Chr5:5398973 | Cone8ag1349 | Cone-Chr8:10827919 | 0 | dispersed | |
Cone1ag0687 | Cone-Chr1:6419048 | Cone5ag1195 | Cone-Chr5:5398973 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
82870 | None | None | None | None | Cone | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone5ag1195 | K20715 | - | vvi:100262213 | 1482.62 |