Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1195 ATGGAGCAATCAGACACTCCATTCTCCAAGCTGTCATCAACAACAACAACAGCAGCCCACTTACCACCATTTCTGCGAGATTCGCGCGGTTCACTAGAAGTCTTCACTCCTTCATCAACCTACTCGAACCCACCGGACGAATCAGTTTTCCTGTCAAATATAACATGGCAGAGCTGGGCCGAACCACGTCACATCTCCGAACCCGAACCACCCAACATTTCTTCCAAATCCTTCAAAGCCACGGAGGAGATAACTCCATGGATGGCCCTAAATGATGACCCGGATTCTTACCCGGTTCCTGCACATAAGACCATCTCAGCGATTGTCAGTGAAAAATCAACGAGGGCTCAGACGCCGTTATCGCCAGGCCGCGTGGGAGCCGCGGCTCAACGAGCGGCCGAGTGGGGCTTGGTTCTGAAGACGGATATAGAGACCGGTAAGCCTCAAGGAGTGACGGTTCGGACTTCTGGGGGAGATGAACCGAACAAACCGGATAGGAGGACGTCGAATAACTCGGTGAGGAGTTCGGGCGACAATTCGGATGAAGGTGGGTCGAATGAGAGAGGGATTCCTAGAGCGTCGGAAGACTTGAAGGACGTCTTGTCGACTTTCCAGCAGACGTTTGTCGTTTCGGATGGGACGAAATCCGATTACCCGATCATGTATGCGAGTGCGGGGTTCTTTAACATGACGGGTTACTCTTCCAAGGAAGTCATAGGACGAAATTGTCGGTTCTTACAGGGACCGGATACTGACCCGGAAGATTTGAGGAAGATAAGGGAAGCTTTACAGGGTGGGAGAAGTTATTGTGGAAGGTTGTTGAATTACAAGAAAGATGGGACGCCCTTTTGGAATCTACTTACCATTGCACCTGTCAAGGATGAATCTGGCAATGTCATCAAATTTATCGGAATGCAAGTGGAAGTGAGCAAGCACACGGAGGGTTCGAAAGATAAGATGCTCCGTCCCAACGGACTACCCGAGTCCTTGATCAAATATGATTCGCGTCAAAAGGAGATGGCCACGAGTTCGGTAACCGAACTAATACATGCTGTAAAAAGGCCCCGTTCACTTAGTTTATCAACAAACCGTCCTTATGTTAGAAAATCCGGCGATAAGAAAGAGGAAAGAGCCGGAATCCCGGCCCCACCAAGACGAAATTCGCATGCTGGAATCAGAAGTCCGATGCAGAAGATCAGTGAATTCCCCGATAAGAAACAAAAAAAACTCAAGCGTCATTCTTTCATAGGGATTGTTTGGAAAAGTCGATTGAATGTCGAAAAGTTTGAAGATGGAATGAGACTTGATAATGATGAGAGCGATGGGAATGAACGGCTGGGAAGTGATGATGAGAGGCCGGATAGTTTGGATGATAAAGAAAGACAAAAGGAGAAGAGAAAGGGTATTGATTTAGCTACGACACTTGAACGGATTGAGAAAAACTTTGTCATTACCGATCCAAGGCTTCCAGACAATCCCATTATATTTGCATCGGATAGCTTCTTGGAACTTTCGGAGTATAGCCGCGAAGAAATACTGGGAAGAAATTGCAGGTTTTTGCAAGGACCGGAAACAGATCCGGCCACTGTTAGAAAGATACGGGAGGCGATCGACAACCAAACTGAAGTTACTGTCCAGCTTATTAACTACACAAAAAGCGGTAAAAAATTCTGGAATGTGTTTCATCTACAACCGATGCGTGATCAAAAGGGTGAAGTGCAGTATTTTATAGGAGTACAACTTGACGGTAGTCAGCATATTGAGCCGCTCAATAGTTGCATTCTAGGAGAAACCGGGAAAGAAAGCGAAAAAACGGTCAAAGAAACAGCAAAAAATGTCGATGTAGCCGTTAGAGAACTCCCGGATGCTAATTCGACACCTGAAGATTTGTGGATCAACCATTCCAAGTTGGTTCATCCTAAACCTCATCGGAGAGACAGTCCCTCTTGGAAAGCTATTCAGAAGATTCTAGCTAGCGGTGAACAGATCGGCTTGAAACATTTTAAACCGATTAAACCTTTGGGTTCGGGCGATACCGGCTGCGTTCATTTGGTAGAATTGTGTGGGACCGGTCTCTACTTTGCCATGAAGGCTATGGACAAGAGTGTTATGATTAGCCGAAACAAGGTGCATAGAGCTTGTATAGAGAGGGAAATCCTCGACATGTTAGATCATCCTTTCCTTCTTGCACTATATGCATCATTTCAGACAAAAACTCATGTTTGTTTAATAACCGATTACTGTCCGGGCGGAGAACTCTTTATGCTTTTGGATCGACAACCTACGAAGGTCCTTAAAGAAGACGCTGTCAGATTTTATGCTGCTGAGGTTATTGTTGCTTTGGAGTACCTTCACTGTCAAGGGATAATTTACAGAGACTTGAAGCCTGAGAACATCTTACTTCAGGGCAATGGACATGTCTCCTTAACGGATTTCGATCTTTCATGTTTAACTTATTGCAGACCCCAACTTTTGTTTCCAGATGCATATGAGAAGAAAAAGAAACACAAGGGCCAACAGAATCCGATCTTTATTGCCGAACCAATGAGAGCATCAAACTCATTTGTCGGCACAGAAGAGTATATCGCTCCGGAAATCATAAGCGGGGCTGGCCATACAAGTGCAGTTGACTGGTGGGCACTTGGCATTCTTTTATACGAAATGCTTTACGGGTACACACCGTTTCGAGGGAAAACGAGGCAGAAGACATTTGCCAACATTCTTCACAAAGATCTCAAATTTCCCAGAAGCATAACGGTAAGTTTGAGTGCAAAGCAGTTGATGTATAGGCTACTTCATAGGGACCCTTTGAACAGATTGGGATCAGTAGAAGGAGCTTATGAAATCAAACAACACCCTTTCTTTCATGGTATCAATTGGGCACTTGTTCGCTCCGAGAATCCTCCAGTGCTTGAAGTACCTGTATTTGGGAAGACCGAAGGTGAGAAAGATGTTAGTTCAATTGATCCTGGGTTGCAGGATCTGCAAATCAATGTCTTCTGA 3003 45.42 MEQSDTPFSKLSSTTTTAAHLPPFLRDSRGSLEVFTPSSTYSNPPDESVFLSNITWQSWAEPRHISEPEPPNISSKSFKATEEITPWMALNDDPDSYPVPAHKTISAIVSEKSTRAQTPLSPGRVGAAAQRAAEWGLVLKTDIETGKPQGVTVRTSGGDEPNKPDRRTSNNSVRSSGDNSDEGGSNERGIPRASEDLKDVLSTFQQTFVVSDGTKSDYPIMYASAGFFNMTGYSSKEVIGRNCRFLQGPDTDPEDLRKIREALQGGRSYCGRLLNYKKDGTPFWNLLTIAPVKDESGNVIKFIGMQVEVSKHTEGSKDKMLRPNGLPESLIKYDSRQKEMATSSVTELIHAVKRPRSLSLSTNRPYVRKSGDKKEERAGIPAPPRRNSHAGIRSPMQKISEFPDKKQKKLKRHSFIGIVWKSRLNVEKFEDGMRLDNDESDGNERLGSDDERPDSLDDKERQKEKRKGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELSEYSREEILGRNCRFLQGPETDPATVRKIREAIDNQTEVTVQLINYTKSGKKFWNVFHLQPMRDQKGEVQYFIGVQLDGSQHIEPLNSCILGETGKESEKTVKETAKNVDVAVRELPDANSTPEDLWINHSKLVHPKPHRRDSPSWKAIQKILASGEQIGLKHFKPIKPLGSGDTGCVHLVELCGTGLYFAMKAMDKSVMISRNKVHRACIEREILDMLDHPFLLALYASFQTKTHVCLITDYCPGGELFMLLDRQPTKVLKEDAVRFYAAEVIVALEYLHCQGIIYRDLKPENILLQGNGHVSLTDFDLSCLTYCRPQLLFPDAYEKKKKHKGQQNPIFIAEPMRASNSFVGTEEYIAPEIISGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPRSITVSLSAKQLMYRLLHRDPLNRLGSVEGAYEIKQHPFFHGINWALVRSENPPVLEVPVFGKTEGEKDVSSIDPGLQDLQINVF 1000
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5398973 5405530 - Conep05aG0123500.1 Cone5ag1195 438213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1195 1000 ProSiteProfiles PAS repeat profile. 471 540 IPR000014 -
Cone5ag1195 1000 MobiDBLite consensus disorder prediction 367 382 - -
Cone5ag1195 1000 PANTHER FLIPPASE KINASE 1-RELATED 597 973 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cone5ag1195 1000 Pfam PAS domain 490 582 IPR000014 -
Cone5ag1195 1000 Pfam PAS domain 214 310 IPR000014 -
Cone5ag1195 1000 Gene3D Phosphorylase Kinase; domain 1 667 987 - -
Cone5ag1195 1000 SUPERFAMILY PYP-like sensor domain (PAS domain) 483 582 IPR035965 -
Cone5ag1195 1000 ProSiteProfiles Protein kinase domain profile. 668 955 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1195 1000 MobiDBLite consensus disorder prediction 1 21 - -
Cone5ag1195 1000 MobiDBLite consensus disorder prediction 1 26 - -
Cone5ag1195 1000 ProSitePatterns Protein kinases ATP-binding region signature. 674 697 IPR017441 GO:0005524(InterPro)
Cone5ag1195 1000 CDD PAS 482 582 IPR000014 -
Cone5ag1195 1000 Gene3D PAS domain 455 620 - -
Cone5ag1195 1000 NCBIfam PAS domain S-box protein 492 582 IPR000014 -
Cone5ag1195 1000 NCBIfam PAS domain S-box protein 219 313 IPR000014 -
Cone5ag1195 1000 ProSiteProfiles PAS repeat profile. 193 266 IPR000014 -
Cone5ag1195 1000 ProSiteProfiles PAC domain profile. 541 595 IPR000700 -
Cone5ag1195 1000 FunFam LOV domain-containing protein 667 751 - -
Cone5ag1195 1000 Gene3D Transferase(Phosphotransferase) domain 1 752 978 - -
Cone5ag1195 1000 SUPERFAMILY PYP-like sensor domain (PAS domain) 216 306 IPR035965 -
Cone5ag1195 1000 MobiDBLite consensus disorder prediction 359 407 - -
Cone5ag1195 1000 MobiDBLite consensus disorder prediction 433 468 - -
Cone5ag1195 1000 ProSitePatterns Serine/Threonine protein kinases active-site signature. 789 801 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag1195 1000 SMART serkin_6 668 955 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1195 1000 CDD PAS 220 309 IPR000014 -
Cone5ag1195 1000 SMART pas_2 469 538 IPR000014 -
Cone5ag1195 1000 SMART pas_2 195 264 IPR000014 -
Cone5ag1195 1000 ProSiteProfiles PAC domain profile. 267 321 IPR000700 -
Cone5ag1195 1000 CDD STKc_phototropin_like 666 974 - -
Cone5ag1195 1000 Gene3D PAS domain 207 364 - -
Cone5ag1195 1000 SMART pac_2 544 586 IPR001610 -
Cone5ag1195 1000 SMART pac_2 270 312 IPR001610 -
Cone5ag1195 1000 SUPERFAMILY Protein kinase-like (PK-like) 646 975 IPR011009 -
Cone5ag1195 1000 FunFam Putative LOV domain-containing protein 207 363 - -
Cone5ag1195 1000 MobiDBLite consensus disorder prediction 168 183 - -
Cone5ag1195 1000 FunFam Putative LOV domain-containing protein 752 967 - -
Cone5ag1195 1000 FunFam LOV domain-containing protein 456 620 - -
Cone5ag1195 1000 Pfam Protein kinase domain 671 955 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1195 1000 MobiDBLite consensus disorder prediction 146 191 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0984 Cone-Chr13:8343150 Cone5ag1195 Cone-Chr5:5398973 1.89E-41 dispersed
Cone19ag0974 Cone-Chr19:7385983 Cone5ag1195 Cone-Chr5:5398973 6.92E-57 dispersed
Cone1ag1396 Cone-Chr1:56734111 Cone5ag1195 Cone-Chr5:5398973 6.22E-54 dispersed
Cone3ag1262 Cone-Chr3:31437606 Cone5ag1195 Cone-Chr5:5398973 0 dispersed
Cone5ag0387 Cone-Chr5:1653954 Cone5ag1195 Cone-Chr5:5398973 3.82E-51 dispersed
Cone5ag1195 Cone-Chr5:5398973 Cone8ag1349 Cone-Chr8:10827919 0 dispersed
Cone1ag0687 Cone-Chr1:6419048 Cone5ag1195 Cone-Chr5:5398973 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82870 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1195 K20715 - vvi:100262213 1482.62