Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1201 ATGGCGGATTTGTCACACAACAATATTCCAGGTCAATATACTGATTTTCCAGGGCTTCCGACTCATGGAGGTCAGTTCATAGAGTACAACATCTTCGGAAATCTGTTCGAGGTCACGGCGAAGTATCGTCCTCCGATCATGCCGATAGGTCGTGGAGCTTACGGCATCGTCTGCTCGATTTTGAATACGGAGACTAAAGAGATGGTTGCTGTGAAGAAGATAGCCAACGCGTTCGATAATCACATGGACGCGAAGCGAACACTTCGTGAGATTAAGTTGCTTCGGCATCTTAATCATGAAAATGTCGTAAGCATAAGAGATGTAATTCCTCCACCTCTACAAAGAGAGTTCACTGATGTTTACATTGCCACAGAACTAATGGATACAGATCTTCACCAAATAATCCGCTCCAATCAAAGTTTTTCAGAAGAGCACTGTCAGTACTTTCTGTATCAGATTCTCCGAGGACTGAAATACATACATTCGGCAAACATCATCCATCGAGATTTAAAACCGAGCAATCTGGTCGTCAATGCAAATTGTGATCTTAAAATCTGTGATTTTGGTCTTGCTCGTCCGACCTCAGAGAATGAGTTCATGACGGAGTATGTTGTCACAAGATGGTACAGGGCACCTGAGCTACTCTTGAATTCCTCAGATTACACTGCTGCTATTGATGTCTGGTCTGTTGGTTGCATCTTCATGGAACTTATGAACAGAAAGCCTTTGTTCCCTGGCAAGGATCACGTGCATCAAATGCGTTTACTATTAGAGCTTCTTGGCACACCAAGTGAGTCTGATCTTGGGTTTGTTCGGAACGATGCAAGAAGATATATCCAGCAATTACCCCAACATCCACGTCAGCCATTAGACAAGGTCTTCCCTCACGTGCATCCATTGGCAATTGATCTCATTGATAAAATGTTGACATTTGATCCCACAAAAAGAATTACTGTTGAAGAAGCTCTAGCACATCCTTACCTTGAAAGATTGCACGAAGAAGCAGATGAGCCAATCTGTTCAGAACCATTCTCGTTTGAGTTCGAAAAGCAAGCCCTAGATGAAGAGCAGATGAAGGATATGATTTACAAGGAAGCCATATCACTCAATCCAGAATATGCTTGA 1125 42.84 MADLSHNNIPGQYTDFPGLPTHGGQFIEYNIFGNLFEVTAKYRPPIMPIGRGAYGIVCSILNTETKEMVAVKKIANAFDNHMDAKRTLREIKLLRHLNHENVVSIRDVIPPPLQREFTDVYIATELMDTDLHQIIRSNQSFSEEHCQYFLYQILRGLKYIHSANIIHRDLKPSNLVVNANCDLKICDFGLARPTSENEFMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMNRKPLFPGKDHVHQMRLLLELLGTPSESDLGFVRNDARRYIQQLPQHPRQPLDKVFPHVHPLAIDLIDKMLTFDPTKRITVEEALAHPYLERLHEEADEPICSEPFSFEFEKQALDEEQMKDMIYKEAISLNPEYA 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5436270 5438950 - Conep05aG0124100.1 Cone5ag1201 438219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1201 374 FunFam Mitogen-activated protein kinase 28 137 - -
Cone5ag1201 374 SUPERFAMILY Protein kinase-like (PK-like) 48 335 IPR011009 -
Cone5ag1201 374 ProSiteProfiles Protein kinase domain profile. 43 328 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1201 374 Gene3D Transferase(Phosphotransferase) domain 1 127 355 - -
Cone5ag1201 374 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 36 365 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Cone5ag1201 374 Gene3D Phosphorylase Kinase; domain 1 26 365 - -
Cone5ag1201 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag1201 374 Pfam Protein kinase domain 48 328 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1201 374 ProSitePatterns MAP kinase signature. 78 181 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1201 374 FunFam Mitogen-activated protein kinase 127 355 - -
Cone5ag1201 374 SMART serkin_6 43 328 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1201 374 ProSitePatterns Protein kinases ATP-binding region signature. 49 73 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0799 Cone-Chr12:7308159 Cone5ag1201 Cone-Chr5:5436270 2.12E-207 dispersed
Cone5ag1201 Cone-Chr5:5436270 Cone8ag0764 Cone-Chr8:7689117 1.19E-214 dispersed
Cone11ag1276 Cone-Chr11:9480935 Cone5ag1201 Cone-Chr5:5436270 4.96E-186 wgd
Cone13ag1317 Cone-Chr13:9765461 Cone5ag1201 Cone-Chr5:5436270 1.45E-26 wgd
Cone18ag0309 Cone-Chr18:1516153 Cone5ag1201 Cone-Chr5:5436270 2.23E-189 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82872 PF01466 Skp1 1.60E-11 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1201 K20536 - vvi:100263976 676.781