Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1204 ATGTTAGATCTTAATCTCAATGATGCCTCGGCCGATTCGACTCAGAACGATGAACCGGTCATGCTCCTCGAGAAGCTCTCTCAAGCTTCGGGGAACCAAATGGACGAATCAGGGACCTCCAATTCCTCGATCGTCAATGCAGAGGCCTCGAGCAATGGAGGTGACGATGACTCGTGCTCTACACGCGCTGGTGGTGAGGTCTTTACATTCAAGTTCGATATATTGAAGGACGGGAGAAGAAGCGACGTCATTACGCGAGAGTTTTTTCCGATTGGTGGAGCTGGTGGTGATTTCGGAAACGGACATGGGGACAACTCTGCCTCTTCTTCGCCGGGGAAGAACTGGATCGACCTGGCTTTCAAGCAGAGCGGCCCAGGCAATGAGGTTAGGAGGGTTCAGCCTCAACAGCAGCAGCCGGTGAAGAAAAGCAGAAGAGGTCCGAGGTCTCGTAGCTCACAGTACAGAGGCGTTACGTTCTATAGGAGAACTGGAAGATGGGAATCTCATATTTGGGACTGTGGGAAGCAAGTCTATTTAGGTGGATTTGACACTGCCCACGCTGCAGCAAGAGCTTATGATCGGGCAGCTATCAAGTTCAGGGGAGTTGAAGCTGACATCAATTTTAACCTTAGTGATTATGATGACGATTCGAAGCAGATGAAGAATCTGACCAAGGAAGAATTTGTTCATATACTTCGTCGCCAGAGTACTGGATTCTCCAGGGGGAGTTCAAAATATCGGGGGGTGACACTGCACAAATGTGGCCGATGGGAAGCTAGAATGGGGCAGCTCCTTGGAAAAAAGTATATATATCTTGGGCTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCGATCAAATGCAATGGAAAGGAGGCAGTCACCAACTTTGAGCCCAGCACATATGAAGGAGAGATGATTTCTGAAAGCAGTAATGGAGGCCGTGAAGGAGCTCTTGATTTGAATTTAGGGATTTCACCCCCTTCCCTTGATAGTGGTCCAAAGGAAATTGAGGGTCATGTTCAGTTCCCGCCCAGTCCTTATTATGTCTGTAATACCAGAACTCCCCAGATGGAAAACCATACAATTGCAACTCCTGGCAATCCACCTTTGAAAGGGCCATTTAAGACATCAGAGAACCCCACATTGTGGAATGGTGTATATCCTAATTTCTTCCCAAATGAGGAAAGAGTAATATCACCATCAGAGAAGAGAATTGCAATAGACTCTTCACAAGTAATTCCCAACTGGGCATGGAAAATACAACATGGCCAGGTCAGTTCTACCCAACTGCCACTGTTCTCTACTGCAGCATCATCAGGATTCTCATTTTCAACTACTACTCCTACTACTCCTCCTTACCCCCCTTCACCAGCTGCCTTCCACCTGTCAAACCCTTCAAGCTCAGCCCCCCTAAATCTATGTCTTATGTCAGCCCAACCACCCCTATACCACCACCACCTTTACCCGATGAAGCCCCCTCAGGCACCGCCATAA 1509 48.24 MLDLNLNDASADSTQNDEPVMLLEKLSQASGNQMDESGTSNSSIVNAEASSNGGDDDSCSTRAGGEVFTFKFDILKDGRRSDVITREFFPIGGAGGDFGNGHGDNSASSSPGKNWIDLAFKQSGPGNEVRRVQPQQQQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNLSDYDDDSKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKYIYLGLFDSEVEAARAYDKAAIKCNGKEAVTNFEPSTYEGEMISESSNGGREGALDLNLGISPPSLDSGPKEIEGHVQFPPSPYYVCNTRTPQMENHTIATPGNPPLKGPFKTSENPTLWNGVYPNFFPNEERVISPSEKRIAIDSSQVIPNWAWKIQHGQVSSTQLPLFSTAASSGFSFSTTTPTTPPYPPSPAAFHLSNPSSSAPLNLCLMSAQPPLYHHHLYPMKPPQAPP 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5461638 5464626 - Conep05aG0124400.1 Cone5ag1204 438222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1204 502 MobiDBLite consensus disorder prediction 128 142 - -
Cone5ag1204 502 MobiDBLite consensus disorder prediction 7 58 - -
Cone5ag1204 502 FunFam AP2-like ethylene-responsive transcription factor 152 211 - -
Cone5ag1204 502 Pfam AP2 domain 153 201 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag1204 502 Pfam AP2 domain 244 294 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag1204 502 MobiDBLite consensus disorder prediction 94 154 - -
Cone5ag1204 502 SUPERFAMILY DNA-binding domain 244 303 IPR016177 GO:0003677(InterPro)
Cone5ag1204 502 CDD AP2 153 211 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag1204 502 Gene3D AP2/ERF domain 152 210 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag1204 502 Gene3D AP2/ERF domain 244 303 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag1204 502 MobiDBLite consensus disorder prediction 1 61 - -
Cone5ag1204 502 FunFam AP2-like ethylene-responsive transcription factor 244 304 - -
Cone5ag1204 502 PRINTS Ethylene responsive element binding protein signature 246 257 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag1204 502 PRINTS Ethylene responsive element binding protein signature 284 304 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag1204 502 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 40 330 - -
Cone5ag1204 502 SUPERFAMILY DNA-binding domain 152 210 IPR016177 GO:0003677(InterPro)
Cone5ag1204 502 MobiDBLite consensus disorder prediction 102 116 - -
Cone5ag1204 502 CDD AP2 244 304 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag1204 502 SMART rav1_2 245 308 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag1204 502 SMART rav1_2 153 215 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag1204 502 ProSiteProfiles AP2/ERF domain profile. 245 302 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag1204 502 ProSiteProfiles AP2/ERF domain profile. 153 209 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0139 Cone-Chr12:721303 Cone5ag1204 Cone-Chr5:5461638 3.84E-113 dispersed
Cone5ag1204 Cone-Chr5:5461638 Cone8ag0138 Cone-Chr8:727322 2.77E-118 dispersed
Cone1ag0696 Cone-Chr1:6470469 Cone5ag1204 Cone-Chr5:5461638 1.02e-315 wgd
Cone1ag1335 Cone-Chr1:56459580 Cone5ag1204 Cone-Chr5:5461638 4.23E-64 wgd
Cone10ag0265 Cone-Chr10:1265019 Cone5ag1204 Cone-Chr5:5461638 2.41E-135 wgd
Cone3ag0291 Cone-Chr3:1509147 Cone5ag1204 Cone-Chr5:5461638 1.55E-139 wgd
Cone5ag0321 Cone-Chr5:1359024 Cone5ag1204 Cone-Chr5:5461638 1.39E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46182 PF00069 Pkinase 1.10E-69 CL0016 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1204 K09284 - csv:101222024 616.69