Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1219 ATGGAAATTGATCTGAGCCATGCAGTAGTTGGTGAGGTGGAGAAGGATGATAATAATAATATCAATAATGTGTATTATTGTAATGGGAATTGTGAGAAGAACAGTAGTTGTGCTTGCTGTTGTCTGTCCTCCTCAACGTCCTCTTCTTCAATTTCATCATCAATTCATGTCTCTTCCTCTACTTCTCTTGAGCTTTGGCATGCTTGTGCTGGTCCTCTCACCTCACTTCCCAAGAAAGGAAATGTGGTTGTTTACTTCCCACAAGGTCACTTAGAACAAGCTCTCTCCACCTCTCCTTTCTCTCCCATGGAAACTCCCACTTTTGGTCTTCAGCCTCAAATCTTCTGCAGGGTCTTAAATGTCCAATTACTAGCAAATAAGGACAATGATGAGGTCTATACAAGAGTCACTTTGCTTCCCCAACCAGAGTTGGTAGGAGGGGGCTTAGAGGGGAAAGAACTGGAAGAAATGGGAATTGATGGGGATATGGGTGGAGGCGTATCCACAAGATCTACACCTCACATGTTTTGTAAAACACTTACGGCTTCTGATACGAGCACCCATGGTGGCTTCTCGGTCCCACGCAGAGCTGCCGAGGATTGTTTTCCTCCTCTGGATTATAAACAGCAGAGACCGTCTCAGGAGCTTGTAGCAAAGGACCTACATGGGATCGAATGGAGGTTTCGGCATATCTTTAGAGGTCAGCCTAGGCGGCATCTGCTTACTACTGGATGGAGTATATTTGTTAGCCAAAAGAATCTTGTTTCTGGGGATGCAGTGCTCTTCTTGAGGGGTGAAAATGGGGAGCTAAGGTTGGGTATAAGAAGGTCAGTTCGACCTAGAAGCGGTCTTCCGGATTCAGCCGTTGGCAATCAGAATTCTTATCCAAACGTTCTTTCTCTTGTGTCTAATGCTATAACCTCCAAGAGCATGTTTCATGTCTTCTACAATCCAAGGGCTAGTCATGCACAGTTTGTCATACCATATCAGAAGTATGTGAAAAGCATTACTAATCCAGTGGCTATTGGGACAAGATTCAAAATGAGATATGAAATGGACGATTCACCGGAAAGAAGGTTTAGTGGGGTAGTGATGGGAATTGGTGACATGGATCGCTATAGATGGCCCAATTCAAAATGGAAAAGCTTGATAGTAAGATGGGATGAAGGTCCGGTGAGTGGTCATCAAGAATGCGTTTCTCCATGGGAAATTGATCCTTCAGTTTCTCTTTCACCATTAAACATTCAATCTTCGCCGAGGCTTAAGAAACTGCGTACAAATCTCACTTCGATCCACCCTAACAACCCCATTTCCGGTGAGGGTGTGTTTTTGGACTTTGAGGACTCTATAAAATCCTCTAAGGTCTTGCAAGGTCAAGAAAATTTAGGTTCTACCAGAACATCACAACCTTTCTACAGGCGTGATCCCACCACAAACCACCATCTGGATTTCGAGATGCGCTCAGGGGGAATAGAAAAAGTCAATATCAATGAGTTTGTGAAGAATGCTCATAACATCACCCCTTACACTGGCTTAACGGAATCTGATAGATGTCCAAAGGTCTTGCAAGGTCAAGAAATATGCCCTCTGAGATCACTAACTTGTAAAGGAGACTTCAATTTCACTCCTTGGGAAAAGATCAATAATTTCGGGTCCAACCCTTTTAACATGTTTCAATCCCCCAAGCCTGGTTTCTACCATCTTGCACCTGAAGGGATTCAAAATGCGTATTTTCCTTATCCCGATACTATGAGGCGGACCTATGTTAACTACTTCCCTAGAGAGAATAATCTCTCACTTGAACCATCTTCTATAGAGGTTGGGAAAGTAAGGAATGAAATAGAGCATAAGTTGGTAGAAAGTATTTCAAATTCTCCAAGCTCAGGTTCTGCTGATCAAAGAGATTCAAATGAAAAGAATGTTAATAATGGGATTGGAAATGGGTGCAAGCTTTTTGGTTTTTCATTGACTGCAGAAGCAGGGAAGAGGAGCTGTAAAAAGGTTCACAAGCAAGGTAGCTTAGTAGGAAGAGCCATTGATCTATCTAGGCTGAATGGTTATGAAGAACTTCTCATAGAACTCGAGCGGCTTTTTGGCATGGAAGGGCTCTTGAGAGATCCCGATAAAGGTTGGCGGATTTTGTACACTGATAGTGAAAATGATGTCATGGTTGTTGGAGATGACCCATGGCTTGAATTCTGTAATGTAGCATCGAAAATTCATATACATACCCAAGAAGAAGTGGAGAAGATGACTATTGGAATGAACATTAGTGATGATACTCAGAGCTGTTTGGACCAGGGCCAGGTCACGATTGAAGGGTCCAAGTCGTCGTCAGTGGGCCAGCCCGAGTGCTCTCCAACAGTAGAGCTCACGACCAATAATCATTCTTCTGATTTCACTCGTTCCGGCTCCAATCTCGTATAG 2427 43.35 MEIDLSHAVVGEVEKDDNNNINNVYYCNGNCEKNSSCACCCLSSSTSSSSISSSIHVSSSTSLELWHACAGPLTSLPKKGNVVVYFPQGHLEQALSTSPFSPMETPTFGLQPQIFCRVLNVQLLANKDNDEVYTRVTLLPQPELVGGGLEGKELEEMGIDGDMGGGVSTRSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGIEWRFRHIFRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRSVRPRSGLPDSAVGNQNSYPNVLSLVSNAITSKSMFHVFYNPRASHAQFVIPYQKYVKSITNPVAIGTRFKMRYEMDDSPERRFSGVVMGIGDMDRYRWPNSKWKSLIVRWDEGPVSGHQECVSPWEIDPSVSLSPLNIQSSPRLKKLRTNLTSIHPNNPISGEGVFLDFEDSIKSSKVLQGQENLGSTRTSQPFYRRDPTTNHHLDFEMRSGGIEKVNINEFVKNAHNITPYTGLTESDRCPKVLQGQEICPLRSLTCKGDFNFTPWEKINNFGSNPFNMFQSPKPGFYHLAPEGIQNAYFPYPDTMRRTYVNYFPRENNLSLEPSSIEVGKVRNEIEHKLVESISNSPSSGSADQRDSNEKNVNNGIGNGCKLFGFSLTAEAGKRSCKKVHKQGSLVGRAIDLSRLNGYEELLIELERLFGMEGLLRDPDKGWRILYTDSENDVMVVGDDPWLEFCNVASKIHIHTQEEVEKMTIGMNISDDTQSCLDQGQVTIEGSKSSSVGQPECSPTVELTTNNHSSDFTRSGSNLV 808
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5588367 5593445 - Conep05aG0125900.1 Cone5ag1219 438237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1219 808 Gene3D - 174 278 IPR015300 -
Cone5ag1219 808 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 63 752 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone5ag1219 808 SUPERFAMILY DNA-binding pseudobarrel domain 171 283 IPR015300 -
Cone5ag1219 808 MobiDBLite consensus disorder prediction 773 808 - -
Cone5ag1219 808 CDD B3_DNA 174 276 IPR003340 GO:0003677(InterPro)
Cone5ag1219 808 SUPERFAMILY CAD & PB1 domains 667 742 - -
Cone5ag1219 808 Pfam Auxin response factor 302 383 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone5ag1219 808 ProSiteProfiles B3 DNA-binding domain profile. 176 278 IPR003340 GO:0003677(InterPro)
Cone5ag1219 808 SMART B3_2 176 278 IPR003340 GO:0003677(InterPro)
Cone5ag1219 808 Pfam B3 DNA binding domain 176 277 IPR003340 GO:0003677(InterPro)
Cone5ag1219 808 MobiDBLite consensus disorder prediction 456 475 - -
Cone5ag1219 808 Gene3D - 340 412 - -
Cone5ag1219 808 FunFam Auxin response factor 174 278 - -
Cone5ag1219 808 MobiDBLite consensus disorder prediction 456 478 - -
Cone5ag1219 808 MobiDBLite consensus disorder prediction 621 642 - -
Cone5ag1219 808 ProSiteProfiles PB1 domain profile. 663 745 IPR053793 -
Cone5ag1219 808 Gene3D - 659 752 - -
Cone5ag1219 808 FunFam Auxin response factor 339 411 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag1219 Cone-Chr5:5588367 Cone9ag0989 Cone-Chr9:5080316 1.01E-146 dispersed
Cone1ag0715 Cone-Chr1:6611878 Cone5ag1219 Cone-Chr5:5588367 0 wgd
Cone10ag0249 Cone-Chr10:1202879 Cone5ag1219 Cone-Chr5:5588367 2.16E-68 wgd
Cone3ag0278 Cone-Chr3:1451499 Cone5ag1219 Cone-Chr5:5588367 1.56E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46184 PF00249 Myb_DNA-binding 6.50E-10 CL0123 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1219 K14486 - vvi:100243320 1052.35