Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1222 ATGAGCGTGATCAACATTCTGTTCCGAGTCGATGAAATCTGCAAGAAATATGACAAGTACGATGTCGACAAACAGCGCGAGCTCAATGGGTATGGAGATGACGCCTTTGCTCGTCTCTACGCAGAGGTTGAATCTGAAATCGAAGCTACTCTTAAGAAATCTGAGGCTACTTTGATGGAGACGAACAGAGCATCTGCAGTTGCGATGAATGCCGAGATCAGGAGGAAGAAGACTCAATTAATGGATCAAATTCCTAAGTTGACGAAATTGGCTAAGAAGAAGTTTAAAGGGATCTCCAAAGACGAAGAAGAATTCCGAGGTGATCTTGTTCTTGCACTAGAAGAGAAGATTCAAACAATACCAGATGGAAGTACAACTAATTCAGCAGTAGCTAAACAACTATCTCACAAAAACATCAAGTTTGAATCAGGAGATGGGAATCCGGAAAGTGGATTTTTCCAGCAAAATGAAGAATCGAGTCAGTTTAGACAAGATTACGAAATGCGGAAATTGAAACAGGATGAAGGTCTTGACATAATAGCAGAAGGACTAGGTACACTGAAAAGTTTGGCCCGGGATATGAACGAGGAACTGGATAGGCAAGTCCCCTTAATTGATGAAATTGACACAAAGGTGGATAGCACAACTTCTGAGATAAAGAATACTAATGTTAGGCTAAAAGAAAATCTTCACAAGGTAAATTTTACAATAATTTAG 717 39.89 MSVINILFRVDEICKKYDKYDVDKQRELNGYGDDAFARLYAEVESEIEATLKKSEATLMETNRASAVAMNAEIRRKKTQLMDQIPKLTKLAKKKFKGISKDEEEFRGDLVLALEEKIQTIPDGSTTNSAVAKQLSHKNIKFESGDGNPESGFFQQNEESSQFRQDYEMRKLKQDEGLDIIAEGLGTLKSLARDMNEELDRQVPLIDEIDTKVDSTTSEIKNTNVRLKENLHKVNFTII 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5619930 5621342 + Conep05aG0126200.1 Cone5ag1222 438240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1222 238 SUPERFAMILY SNARE fusion complex 161 227 - -
Cone5ag1222 238 MobiDBLite consensus disorder prediction 140 159 - -
Cone5ag1222 238 FunFam Syntaxin 6 174 235 - -
Cone5ag1222 238 ProSitePatterns Syntaxin / epimorphin family signature. 173 212 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cone5ag1222 238 PANTHER SYNTAXIN 39 228 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cone5ag1222 238 SMART tSNARE_6 162 229 IPR000727 -
Cone5ag1222 238 CDD SNARE_Qc 172 228 - -
Cone5ag1222 238 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 167 229 IPR000727 -
Cone5ag1222 238 Gene3D - 167 228 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1275 Cone-Chr13:9603855 Cone5ag1222 Cone-Chr5:5619930 1.30E-72 wgd
Cone19ag1262 Cone-Chr19:8634624 Cone5ag1222 Cone-Chr5:5619930 1.14E-73 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1222 K08506 - vvi:100258712 312.768