Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1231 ATGGCGAAAGACATAGAGGTGACAGAGCCAGCCGAGTACGCGGCGAAGGACTACCAGGACCCGCCGCCAGCGCCGCTCGTCGACGTGGAGGAGCTGACGAAGTGGTCGTTTTACAGAGCTTTGATAGCAGAGTTTATAGCGACGCTTTTGTTCCTTTACATAACCGTTTTGACCGTTATTGGTTACAAAAGTCAGACTGTTCCGACCAACGATCCTTGCGCCGGAGTCGGCATCCTCGGAATTGCATGGGCCTTTGGCGGCATGATCTTTGTCCTCGTTTACTGCACCGCCGGTATTTCGGGAGGGCATATTAACCCGGCTGTAACTTTCGGGCTATTTCTAGCGCGCAAGGTGTCACTCATCCGTGCGGTCTTGTACATGGTAGCACAGTGTTTAGGTGCTATCTCGGGTGTGGGATTGGTCAAGGCGTTCCAGAAGTCGTACTACGACCGGTATGGAGGTGGGGCCAACGAGCTATCGCCTGGATACAACAAAGGAACTGGTTTAGGGGCTGAGATCATCGGAACCTTTGTTCTTGTCTACACCGTCTTCTCAGCCACTGATCCTAAGAGGAATGCACGAGACTCCCATGTTCCCGTGTTGGCCCCACTTCCTATTGGATTTGCTGTTTTCATTGTTCACTTGGCCACAATCCCAATCACTGGGACTGGAATCAACCCTGCCAGAAGCTTTGGAGCTGCCGTGATTTACAACAAAGAGAAGGCTTGGGATGATCAATGGATATTCTGGGTGGGGCCATTTATTGGAGCAGCAATAGCTGCAATCTATCACCAATACATATTGAGAGCAGGAGCAATTAAGGCACTTGGGTCTTTCAGGAGCAATGCATAA 852 51.06 MAKDIEVTEPAEYAAKDYQDPPPAPLVDVEELTKWSFYRALIAEFIATLLFLYITVLTVIGYKSQTVPTNDPCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAISGVGLVKAFQKSYYDRYGGGANELSPGYNKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFIVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAAIAAIYHQYILRAGAIKALGSFRSNA 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5673499 5675189 - Conep05aG0127100.1 Cone5ag1231 438249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1231 283 Pfam Major intrinsic protein 31 264 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone5ag1231 283 SUPERFAMILY Aquaporin-like 30 269 IPR023271 -
Cone5ag1231 283 CDD MIP 39 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone5ag1231 283 PRINTS Major intrinsic protein family signature 207 229 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone5ag1231 283 PRINTS Major intrinsic protein family signature 122 141 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone5ag1231 283 PRINTS Major intrinsic protein family signature 85 109 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone5ag1231 283 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone5ag1231 283 PRINTS Major intrinsic protein family signature 171 189 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone5ag1231 283 PRINTS Major intrinsic protein family signature 247 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone5ag1231 283 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 11 281 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Cone5ag1231 283 Gene3D Glycerol uptake facilitator protein. 24 283 IPR023271 -
Cone5ag1231 283 FunFam Probable aquaporin PIP1-2 24 283 - -
Cone5ag1231 283 NCBIfam MIP family channel protein 43 263 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone5ag1231 283 ProSitePatterns MIP family signature. 103 111 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0252 Cone-Chr10:1213414 Cone5ag1231 Cone-Chr5:5673499 6.01E-182 dispersed
Cone12ag1237 Cone-Chr12:9577496 Cone5ag1231 Cone-Chr5:5673499 1.37E-160 dispersed
Cone3ag0280 Cone-Chr3:1462429 Cone5ag1231 Cone-Chr5:5673499 2.83E-83 dispersed
Cone5ag1177 Cone-Chr5:5280620 Cone5ag1231 Cone-Chr5:5673499 3.39E-33 dispersed
Cone5ag1231 Cone-Chr5:5673499 Cone8ag1291 Cone-Chr8:10585800 4.84E-161 dispersed
Cone1ag0730 Cone-Chr1:6731374 Cone5ag1231 Cone-Chr5:5673499 4.18E-197 wgd
Cone1ag1352 Cone-Chr1:56550924 Cone5ag1231 Cone-Chr5:5673499 1.84E-176 wgd
Cone18ag0517 Cone-Chr18:2534956 Cone5ag1231 Cone-Chr5:5673499 7.25E-180 wgd
Cone5ag0337 Cone-Chr5:1440129 Cone5ag1231 Cone-Chr5:5673499 1.57E-176 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1231 K09872 - mdm:103447881 515.383