Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1233 ATGGCGACGGCGTTAGCGCACCACAGGGAGAGAGTAGATAATAGTACTAGTGGGAATATAAACAGACACATAGACAGCAGCGGAAAGTATGTGCGTTACACGGCGGAGCAAGTGGAGGCGCTGGAAAGAGTATATGTGGAGTGTCCAAAACCGAGTTCTTTGCGCCGCCAGCAGTTGATCCGGGACTGCCCTATTCTTGCTTCTGTCGAGCCCAAACAGATCAAAGTCTGGTTCCAAAATCGCAGGTGTAGAGAGAAGCAGAGGAAGGAGGCTTCTCAGTTGCAGACGGTGAATAGGAAGCTTTCTGCTATGAACAAGCTGTTAGTGGAGGAGAATGATCGTTTGCAGAAACAGGTATCTCAACTTGTTTGCGAAAACGGTTATATGCGCCAACAGCTGCACACTACACCCGCTGATGCAAGTTGTGAGTCAGTTGTTACTACTCCTCAGCATTCTCTCAGAGACGCTAATAACCCTGCTGGACTTCTCTCCATTGCAGAGGAGACCTTGGCGGAGTTCCTTTCCAAGGCTACAGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCAGTTGGTATCTTTGCCATTTCACAGAGTTGCAGTGGCATGGCGGCTCGAGCATGCGGTCTAGTAAGTCTTGAACCTACGAAGATTGCAGAGATCCTTAAAGATCGTCTTTCCTGGTTCCGGGATTGCCGGAATCTCGAGGTTTTCACCATGTTTTCTGCCGGAAATGGTGGAACAATTGAACTTGTCTACACACAGGTATATGCTCCTACTACTCTAGCTCCGGCAAGAGACTTTTGGACTCTTAGATACACCACAAATTTGGATAACGGAAGCCTCGTGGTGTGTGAGAGGTCGCTTTCTGGGTCCGGAGCAGGCCCGAGTGCTGCAGCTGCTGCTCAGTTTGTGAGAGCTGAAATGTTTCCTAGTGGGTATCTAATCCGACCATGTGAAGGTGGAGGGTCGATTATTCATATTGTAGACCACCTTAGTCTTGAGGCATGGAGCGTACCAGAGGTGCTTCGACCCCTTTATGAATCTTCAAAGGTTGTGGCCCAGAAATTGACGATTGCATCTCTGAGATATATACGGCAAATAGCTCAAGAGACAAGTGGAGAAGTTGTATATGGTTTGGGAAGGCAGCCTGCTGTTCTTCGGACTTTTAGCCAAAGATTGAGCAGAGGCTTTAACGATGCAGTCAATGGGTTCAATGATGATGGGTGGTCCTTGATCAACTCTGACGGCTGTGAAGATGTGATTATAGCCCTTAATTTATCCAAAAACTCAGTTGCATCTTCTAGTTCCACAAATTCACTAGCTTTTCCTGGTGGGGTTCTTTGCGCAAAGGCTTCCATGTTGCTTCAAAATGTCCCACCTGCTGTATTGGTCCGGTTCTTGAGGGAACACAGGTCGGAATGGGCGGACTTTAACGTGGATGCTTACTCAGCTGCTTCTTTGAAAGCCTGTTCATATGCCTACCCCTGGATGCAGCCTACAAGATTTACAGGGAGCCAAGTCATCATGCCACTTGGCCACACCATAGAACATGAAGAGTTACTTGAAGTTATTCGACTTGAAGGACATTCTCTTGCGCAAGAAGATGCCTTTGTTTCGAGGGATGTTCATCTCTTGCAGATATGTACTGGAATCGATGAGAACTCTGTAGGAACCTTTTCGGAACTTGTTTTTGCTCCCATTGATGAAATGTTTCCGGATGATGCCCCTTTACTTCCCTCTGGCTTCCGTATCATCCCTCTGGATTCCAAATCAGGAAATACAAAGGATACACTGGGGACGCATCGGACTTTGGATCTGACATCCAGTCTTGAAGTGGGCCTGGCGACTAACAACAATGCAGATGGGTCATCTTGTCAGAATTCTCGATCGGTTTTAACGATTGCCTTCCAGTTTCCATTTGAGAGCAATCTTCAGGAAAATGTTGCCACCATGGCACGCCACTATGTTCGTAGTGTAATTTCTTCGGTTCAAAGGGTTGCCATGGCCATATCCCCATCTGGGCTTGGACCGACTCTTGGCCCAATGGTGTCTCATGGTTCTCCTGAAGCACTTACCCTAACTCACTGGATTTGCCAGAGCTACAGTTATTATTTGGGGGCAGAACTGATAAGATCTGGTTCTCCGGGTGGTGGCGATTCCATATTGAAACATCTTTGGAATCATCAAGATGCCATTTTATGCTGTTCACTGAAGCCACTCCCTGTCTTCATGTTTGCAAACAAGGCCGGGCTCGACATGTTGGAAACAACTCTAGTTGCTCTACAAGATGTCACATTGGATAAGATATTTGACGAATCTGGACGCAAGGCATTATGTTCGGATTTTGCTAAGTTAATGCAACAGGGTTCTGCTTATTTGCTGCCTGGAATCTGCATATCGACAATGGGTCGTAGAGTTTCATACGAACAAGCTGTTGCATGGAAGGTGCTTACCTCGGAAGAGAACTCTGTTCATTGCCTTGCCTTCTCTTTCATAAACTGGTCTTTTGTGTGA 2535 47.14 MATALAHHRERVDNSTSGNINRHIDSSGKYVRYTAEQVEALERVYVECPKPSSLRRQQLIRDCPILASVEPKQIKVWFQNRRCREKQRKEASQLQTVNRKLSAMNKLLVEENDRLQKQVSQLVCENGYMRQQLHTTPADASCESVVTTPQHSLRDANNPAGLLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGMAARACGLVSLEPTKIAEILKDRLSWFRDCRNLEVFTMFSAGNGGTIELVYTQVYAPTTLAPARDFWTLRYTTNLDNGSLVVCERSLSGSGAGPSAAAAAQFVRAEMFPSGYLIRPCEGGGSIIHIVDHLSLEAWSVPEVLRPLYESSKVVAQKLTIASLRYIRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSLINSDGCEDVIIALNLSKNSVASSSSTNSLAFPGGVLCAKASMLLQNVPPAVLVRFLREHRSEWADFNVDAYSAASLKACSYAYPWMQPTRFTGSQVIMPLGHTIEHEELLEVIRLEGHSLAQEDAFVSRDVHLLQICTGIDENSVGTFSELVFAPIDEMFPDDAPLLPSGFRIIPLDSKSGNTKDTLGTHRTLDLTSSLEVGLATNNNADGSSCQNSRSVLTIAFQFPFESNLQENVATMARHYVRSVISSVQRVAMAISPSGLGPTLGPMVSHGSPEALTLTHWICQSYSYYLGAELIRSGSPGGGDSILKHLWNHQDAILCCSLKPLPVFMFANKAGLDMLETTLVALQDVTLDKIFDESGRKALCSDFAKLMQQGSAYLLPGICISTMGRRVSYEQAVAWKVLTSEENSVHCLAFSFINWSFV 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5706683 5711380 + Conep05aG0127300.1 Cone5ag1233 438251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1233 844 Gene3D - 200 381 IPR023393 -
Cone5ag1233 844 SUPERFAMILY Homeodomain-like 25 94 IPR009057 -
Cone5ag1233 844 CDD homeodomain 29 89 IPR001356 GO:0003677(InterPro)
Cone5ag1233 844 MobiDBLite consensus disorder prediction 1 16 - -
Cone5ag1233 844 ProSiteProfiles 'Homeobox' domain profile. 24 88 IPR001356 GO:0003677(InterPro)
Cone5ag1233 844 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 24 844 IPR044830 GO:0003700(InterPro)
Cone5ag1233 844 Coils Coil 98 125 - -
Cone5ag1233 844 Pfam START domain 165 372 IPR002913 GO:0008289(InterPro)
Cone5ag1233 844 MobiDBLite consensus disorder prediction 1 24 - -
Cone5ag1233 844 Pfam MEKHLA domain 699 843 IPR013978 -
Cone5ag1233 844 CDD bZIP 81 120 - -
Cone5ag1233 844 SMART HOX_1 26 92 IPR001356 GO:0003677(InterPro)
Cone5ag1233 844 SUPERFAMILY Bet v1-like 164 376 - -
Cone5ag1233 844 Pfam Homeodomain 29 87 IPR001356 GO:0003677(InterPro)
Cone5ag1233 844 Gene3D - 23 96 - -
Cone5ag1233 844 ProSiteProfiles START domain profile. 155 383 IPR002913 GO:0008289(InterPro)
Cone5ag1233 844 SMART START_1 164 374 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag1233 Cone-Chr5:5706683 Cone5ag1545 Cone-Chr5:10640417 0 dispersed
Cone1ag0733 Cone-Chr1:6795882 Cone5ag1233 Cone-Chr5:5706683 0 wgd
Cone11ag1301 Cone-Chr11:9613529 Cone5ag1233 Cone-Chr5:5706683 0 wgd
Cone18ag0280 Cone-Chr18:1361069 Cone5ag1233 Cone-Chr5:5706683 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46187 PF14432 DYW_deaminase 7.80E-23 CL0109 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1233 K09338 - vvi:100243208 1429.08