Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1237 ATGAACGAATCAGGAAAGAGCTTAGATCCTGAGCTATGGCATGCTTGTGCTGGAGGGATGGTCCAAATGCCTTCTCTCAACTCAAAAGTCTTCTACTTCCCTCAAGGCCATGCAGAACACTCCCAATCCCCTGTCGATTTCTCCTCATCCCTCAAAATTCCTGCCCTAATCCCTTGCCGTGTCCTCTCCATCAAATTCCTAGCAGACCCAGAAACCGATGAAGTTTTTGCAAAGCTCAAATTGCTTCCTTTACCCAAAACCGACCTCAATTTTGATCCTGCCCACCATGATGAGGCCCCCCTTTCCGGTCCGCAAAATCCTGAAAAACCCACCAACTTTTCCAAGACCTTAACCCAATCTGATGCTAACAATGGTGGGGGGTTTTCGGTCCCCAGATATTGCGCGGAGACAATATTCCCCCGCCTTGATTATGGAGCGGACCCGCCTGTCCAAACTGTCACGGCCAAGGATGTTCATGGTGAGGTTTGGAAGTTCCGGCACATTTATCGTGGGACACCCCGCCGCCATTTGTTAACTACCGGGTGGAGCTCGTTCGTGAATCAGAAGAAGTTGATTGCAGGGGATTCGATCGTGTTTTTTCGGGCTGAAAATGGAGAACTTCGGATTGGGATCCGGCGGACCAAGCGGGGGGTTATTGGGGGTGCACTGGAAGGTCCCACGGGGTGGAACCCGAGTGGTGGTGGTGGTGGATTTTCGATGTATTTGAGGGATGATGAGAGTAGTAAGATGATGATGAGAAATGGTTCTCATGTGAATTTGATGAGTAGGGGGAAGGGAGGGGGAGGAGGAAGGGTTAGGGCAGAAGCGGTTATTGAAGCAGGGGTGCTTGCGAGCAGCGGGCAAGCCTTTGAGGTTGTTTATTACCCGAGGGCAGGTACGCCAGAGTTTTGTGTGAAGGCGGGGTCCGTTATGACGGCGATGAGGACCCAATGGTGCTCGGGGATGAGGTTTAAGATGGCTTTTGAAACTGAGGATTCTTCAAGGATTAGTTGGTTCATGGGAACTATTGCTTCGGTCCAAGTTGCCGACCCTATTTATTGGCCTAATTCTCCATGGCGCCTTCTTCAGGTGACATGGGATGAGCCGGATTTGCTCCAAAATGTGAAGCGCGTGAGTCCATGGTTGGTTGAGGTGGTTTCAAACATGCCCGTTATTCACCTAACATCACCTTTCTCACCTCCGAGAAAGAAGTTGCGGATTCCAGGCCAGCACCCGGACTTCTCCTTTGCTGACAGCCCATATCCAATGCCGTCTTTTTTAAACGATATTCCACGCTTTGGGCCGAGCAGCAGCCCATTATGTTGTCTTTCCGATAACAACAACTCTCCTATCGTAGGGATACAGGGAGCCAGGCATACTCAATTCCCCCAACCTAAAACTTTCTCACCATCTGAGCTCTACCTTAACAACAGCAACAATAAAATGCAGCTAGGGCTTTTCCCATCTTCTGGTTTTTATCGGATGTCCAACAACACATTCACACCCAAGACAAGGCCCAATAGTGACAACAACTTATCTTGCTTGCTAACAATTGGAAACGCCAGTCTAGAAAAAATTACGGAGAAACCCGATAATGTGAAGGAACATGGGTTTGTTCTCTTCGGTCAACCGATACTAACCGAAGAGCAAATGTCTCGCAGTTCTTCCGGAAAAAGCTCCTCCGATTTGAATTCTGAAGGGGTTATAAAGCCCTTCCTTTCGGACGGTTCCGCAGGCTCCACACTCAAGCAACGGATTTCGCCTGACAAGTCCCCAAGCATAGGGTTTTTGTGGTATCATCACCAAAAGACCGAGCTTGGTCTTATGGATACAGGTCATTGTAAGGTGTTTTTGGAGTCTGAAGATGTAGGTCAGAACATAGACCTGTCAGGTTTTGACTCATACGAGGAGTTGTATCGGAAGCTAACCAAAATGTTTGGGATTGAAAGATCAGACATGATTGGTCGTGTTTTGTACCAAGATGCAACTGGTGCTATCAAACATATTGGAGATGAGCCGTTCGGTGATTTTATGAACGTGGCTAAGAAGCTTACGATTTTGACTGGCGCAGGAAGGGACAGGATATTGAGGACATGGATTCCGGGAATGGGGGGAGCTGAAAATGGGCTAAATGCATCGAACAAGAGTTACAAGACAGGGCCGGCTTTGAGCATATTTGCTTAA 2184 48.44 MNESGKSLDPELWHACAGGMVQMPSLNSKVFYFPQGHAEHSQSPVDFSSSLKIPALIPCRVLSIKFLADPETDEVFAKLKLLPLPKTDLNFDPAHHDEAPLSGPQNPEKPTNFSKTLTQSDANNGGGFSVPRYCAETIFPRLDYGADPPVQTVTAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLIAGDSIVFFRAENGELRIGIRRTKRGVIGGALEGPTGWNPSGGGGGFSMYLRDDESSKMMMRNGSHVNLMSRGKGGGGGRVRAEAVIEAGVLASSGQAFEVVYYPRAGTPEFCVKAGSVMTAMRTQWCSGMRFKMAFETEDSSRISWFMGTIASVQVADPIYWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVEVVSNMPVIHLTSPFSPPRKKLRIPGQHPDFSFADSPYPMPSFLNDIPRFGPSSSPLCCLSDNNNSPIVGIQGARHTQFPQPKTFSPSELYLNNSNNKMQLGLFPSSGFYRMSNNTFTPKTRPNSDNNLSCLLTIGNASLEKITEKPDNVKEHGFVLFGQPILTEEQMSRSSSGKSSSDLNSEGVIKPFLSDGSAGSTLKQRISPDKSPSIGFLWYHHQKTELGLMDTGHCKVFLESEDVGQNIDLSGFDSYEELYRKLTKMFGIERSDMIGRVLYQDATGAIKHIGDEPFGDFMNVAKKLTILTGAGRDRILRTWIPGMGGAENGLNASNKSYKTGPALSIFA 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5735524 5739602 - Conep05aG0127700.1 Cone5ag1237 438255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1237 727 MobiDBLite consensus disorder prediction 92 121 - -
Cone5ag1237 727 SMART B3_2 113 215 IPR003340 GO:0003677(InterPro)
Cone5ag1237 727 Pfam B3 DNA binding domain 113 214 IPR003340 GO:0003677(InterPro)
Cone5ag1237 727 FunFam Auxin response factor 111 215 - -
Cone5ag1237 727 ProSiteProfiles PB1 domain profile. 611 689 IPR053793 -
Cone5ag1237 727 MobiDBLite consensus disorder prediction 105 121 - -
Cone5ag1237 727 FunFam Auxin response factor 318 391 - -
Cone5ag1237 727 ProSiteProfiles B3 DNA-binding domain profile. 113 215 IPR003340 GO:0003677(InterPro)
Cone5ag1237 727 Pfam Auxin response factor 283 363 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone5ag1237 727 CDD B3_DNA 113 213 IPR003340 GO:0003677(InterPro)
Cone5ag1237 727 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 689 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone5ag1237 727 Gene3D - 318 390 - -
Cone5ag1237 727 Gene3D - 609 695 - -
Cone5ag1237 727 Gene3D - 111 214 IPR015300 -
Cone5ag1237 727 SUPERFAMILY DNA-binding pseudobarrel domain 110 215 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0249 Cone-Chr10:1202879 Cone5ag1237 Cone-Chr5:5735524 9.56E-183 dispersed
Cone17ag1237 Cone-Chr17:8951389 Cone5ag1237 Cone-Chr5:5735524 7.50E-119 dispersed
Cone20ag0487 Cone-Chr20:2596306 Cone5ag1237 Cone-Chr5:5735524 3.48E-124 dispersed
Cone3ag0278 Cone-Chr3:1451499 Cone5ag1237 Cone-Chr5:5735524 8.40E-216 dispersed
Cone5ag1237 Cone-Chr5:5735524 Cone6ag0985 Cone-Chr6:5395159 1.54E-72 dispersed
Cone1ag0736 Cone-Chr1:6827721 Cone5ag1237 Cone-Chr5:5735524 0 wgd
Cone11ag1059 Cone-Chr11:8336690 Cone5ag1237 Cone-Chr5:5735524 9.62E-176 wgd
Cone13ag1264 Cone-Chr13:9569338 Cone5ag1237 Cone-Chr5:5735524 4.85E-226 wgd
Cone18ag0519 Cone-Chr18:2547457 Cone5ag1237 Cone-Chr5:5735524 1.56E-177 wgd
Cone19ag1251 Cone-Chr19:8592477 Cone5ag1237 Cone-Chr5:5735524 4.26E-229 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46188 PF00201 UDPGT 1.30E-24 CL0113 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1237 K14486 - csv:101216500 859.751