Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1242 ATGAAGCTCCAAGTGGCTGCCATCCTTGCTTGTCTCATCATCTTGATCTGGATTCAACAAAGCTCATGTGATGAACTTTCTCATCCTTCTAGCATAGACAAGTGGACATGCAAATGTTCTTCATACCAAGGAAGCCAAAGCTTCGCCCTTGGAGCTAACTGTTCTACTTCCTGCGATTGCAGCCAAGATACTGGAGGAGGCAACAAGATCTGGACTTGTATGTGTGCACCTGGCGGCTTTCCCAAGGTGGTAGCTGATGGTCAAGATTCTAATTGTTTTACAGCCTGCAACTGCACTTCTGGATTGCTGATTGCACCTGCAGCCTCAAAAAGTCAATTTTCAAACAAAGTGGTGGTGATCATTGTATTGTTATGCATAGCACTTACAACCTTTGCATTTATAGCCTCAGTTGGATGCTTTTTGTTTAGAAGGAAGTTCCCTATTCAATCCTCAGTATTCTCGACAGACAGAGAAACAAGTTTCAACAGCTTAACCAACTTAATCAGCCACAAGAGTTCCTCGATTCAAGAAACCAGGGTTACTGTAGGTTCCAAAGTTAACAATGTTGCAGGATGCTTTCACATGTCATCGTGCTTCTTTAGGAGCAAAGCTGAGACAATAATTGGAACTATCATCTCATTCTCCTACACCGAATTGCAAAATGCAACTGACAAATTTTCAGAGGCCAACCTTGTAGGACTTGGAGGCAGTAGTTTTGTTTATCGTGGTCAGCTTAAAGATGGCCGAATTGTGGCGGTTAAGAGACTAAAATCTCAGGGAGGGCCCGATTCAGACTTTTTATTTTTAACAGAGATAGAATTGTTATCAAGACTCTATCACTGTCATGTGGTACCTCTTCTAGGCTACTGTTCAGAATTCAGGGGAAAACATACCGAAAGGCTATTGGTATATGAATACATGTCTAAGGGTAATCTAAGAGATTGCTTGGACAATAATACGGCAGGGGAAATCATGGATTGGGCTACTCGTGTTGCAATTGCAATAGGAGCTGCTCGAGGCCTCGAATATCTCCATGAAGCAGCTGCTCCAAAAATTCTTCATAGAGATGTCAAGTCAACAAACATTCTTCTAGATGAAGATTTGAGAGCAAAAATAACAGATCTTGGCATGGCTAAAAGATTAAAAGCTGAAGGTGTCCCTAGCTGTTCTAGTTCTCCAGCGAGAATGCAGGGGACTTTTGGGTATTTTGCACCAGAATATGCAATTGTTGGAAGATCATCTCTTAAATCTGATGTATTTAGCTTCGGTGTAGTACTTCTTGAGCTTATCACTGGCCAGCTTCCGATTAAAAAATCAACCAGCAAAGGAGAACAAAGCCTTGTTATCTGGGCGACCCCTCGCTTACAGGATAGCAGACGAGTTATAAAAGAGTTGCCAGACCCGCGTTTAAAGGGACAATTCCCAGAAGAAGAGATGCAAATAATGGCTTATTTAGCAAAGGAGTGTCTTCTGTTGGATCCGGACTCTAGACCAACCATGAGAGAAGTCGTTCAAATCCTTTCAACTATTGCTCCGGATAGTTCCAGAAGGAGAAGCATCCCCTCAAATCTTTTTCAGAAGTCAAGTGAACCTTACATGGAAAGAACCCAATTACCTCCTCTTTCTGGACAACAATTCTACCATGTGGAGGATGACAAAAAACCCATGATTGATGAAGAGATGCTACAACGGGTCCCATCTTGCGAATTGCCTGAAGTCTCAGCTGAATATATGGATAGCTTATTACTAATGACTTCAACTGCTAGAAATCATCACGCCCCAGAGGAGGAAATAGTGGACTTGGCCGAGCCTCGGTTTGAATCATTCTGCATTTCAGATGTCAAGTCTGCCTCATGA 1857 42.49 MKLQVAAILACLIILIWIQQSSCDELSHPSSIDKWTCKCSSYQGSQSFALGANCSTSCDCSQDTGGGNKIWTCMCAPGGFPKVVADGQDSNCFTACNCTSGLLIAPAASKSQFSNKVVVIIVLLCIALTTFAFIASVGCFLFRRKFPIQSSVFSTDRETSFNSLTNLISHKSSSIQETRVTVGSKVNNVAGCFHMSSCFFRSKAETIIGTIISFSYTELQNATDKFSEANLVGLGGSSFVYRGQLKDGRIVAVKRLKSQGGPDSDFLFLTEIELLSRLYHCHVVPLLGYCSEFRGKHTERLLVYEYMSKGNLRDCLDNNTAGEIMDWATRVAIAIGAARGLEYLHEAAAPKILHRDVKSTNILLDEDLRAKITDLGMAKRLKAEGVPSCSSSPARMQGTFGYFAPEYAIVGRSSLKSDVFSFGVVLLELITGQLPIKKSTSKGEQSLVIWATPRLQDSRRVIKELPDPRLKGQFPEEEMQIMAYLAKECLLLDPDSRPTMREVVQILSTIAPDSSRRRSIPSNLFQKSSEPYMERTQLPPLSGQQFYHVEDDKKPMIDEEMLQRVPSCELPEVSAEYMDSLLLMTSTARNHHAPEEEIVDLAEPRFESFCISDVKSAS 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5799358 5802683 - Conep05aG0128200.1 Cone5ag1242 438260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1242 618 ProSitePatterns Protein kinases ATP-binding region signature. 232 254 IPR017441 GO:0005524(InterPro)
Cone5ag1242 618 ProSiteProfiles Protein kinase domain profile. 226 510 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1242 618 Gene3D Phosphorylase Kinase; domain 1 199 306 - -
Cone5ag1242 618 FunFam receptor-like serine/threonine-protein kinase NCRK 200 306 - -
Cone5ag1242 618 Gene3D Transferase(Phosphotransferase) domain 1 307 528 - -
Cone5ag1242 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 352 364 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag1242 618 PANTHER OS01G0750732 PROTEIN 96 529 IPR050885 -
Cone5ag1242 618 SMART serkin_6 226 510 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1242 618 CDD STKc_IRAK 232 507 - -
Cone5ag1242 618 SUPERFAMILY Protein kinase-like (PK-like) 208 507 IPR011009 -
Cone5ag1242 618 Pfam Protein kinase domain 228 505 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1242 618 FunFam receptor-like serine/threonine-protein kinase NCRK 307 519 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag1242 Cone-Chr5:5799358 Cone11ag0700 Cone-Chr11:4775332 1.28E-69 dispersed
Cone5ag1242 Cone-Chr5:5799358 Cone5ag1244 Cone-Chr5:5817793 9.15E-25 proximal
Cone1ag0741 Cone-Chr1:6861061 Cone5ag1242 Cone-Chr5:5799358 2.29E-233 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82874 PF00076 RRM_1 5.00E-15 CL0221 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1242 - - - 0.0