Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1250 ATGAGCAGCATTGAGAATTCTCCAGGAAGCTCCATGCATGGAGTAACAGGCAGAGAGCAAACCTTCGCCTTCTCCGTCGCTTCCCCGACAGTCCCCACCGATCCAACGGCTAAATTCTCTATCCCCGTTGACTCCGAACACAAATCAAAAGTATTCAAAATCTTCTCTCTACAAAACCCTCATATGCGAACCTTCCACCTTTCATGGACCTCCTTCTTCACATGTTTCGTCTCCACATTCGCGGCGGCCCCGCTAGTTCCAATAATCAGAGAGAATCTCGATCTCACCAAAACCGACATTGGGAATGCTGGCGTGGCTTCCGTTTCTGGAAGCATCTTCTCTCGTCTCGTAATGGGGGCAGTTTGCGACTTGCTCGGACCACGTTACGGCTGCGCCTTTCTCATCATGTTGTCGGCTCCGACAGTGTTTTGCATGTCTTTTGTGTCATCGGCTGCCGGATACATCACCGTGAGGTTTATGATCGGGTTTTCTTTGGCGACGTTTGTGTCGTGTCAGTATTGGATGAGTACTATGTTTAATAGTAAGATAATAGGGTTTGTCAATGGGACGGCAGCAGGGTGGGGAAATATGGGAGGTGGAGCTACTCAGCTTTTGATGCCTTTGCTTTATGAGGCTATTAAGAAATGTGGTGCGGCGCCGTTTACAGCTTGGAGGATTGCGTTTTTCATTCCCGGTTTTCTTCATGTCATTATGGGGATTCTTGTTTTGACCTTAGGACAAGATTTGCCGGATGGGAATCTTAGTGCTCTACAGAAGAAAGGTGACGTCGCTAAGGATAAGTTTGGCAAGGTGTTGTGGTATGCTGTTACAAATTACAGAACATGGATCTTTGTCCTCCTTTATGGTTACTCAATGGGAGTAGAACTTTCCACTGATAATGTCATCGCTGAATATTTCTTCGACAGGTTTGATCTAAAGCTTCACACTGCTGGAATCATTGCCGCCTCATTCGGCATGGCCAACCTCGTAGCTAGACCCTTCGGTGGCTATGCTTCAGACTATGCTGCCCGATATTTCGGTATGAGAGGTCGGCTTTGGATCCTTTGGATCCTCCAAACCCTTGGCGGGGTCTTCTGCATCTGGCTCGGCTTAGCTGACTCCCTTCCATTAGCTGTACTAGCTATGATTCTCTTCTCAATCGGAGCTCAAGCGGCTTGTGGAGCTACATTCGGAATAATACCCTTCATTTCTCGGAGATCGTTAGGGATCATATCCGGGTTAACTGGGGCTGGCGGGAACTTTGGATCGGGTTTGACCCAGTTGGTTTTCTTCTCAAGCTCAAGGTTTTCAACAGCAACAGGACTTTCTTTAATGGGAGTTATGACTGTTTGTTGTACTTTGCCCGTTTCGTTGGTGCATTTTCCACAATGGGGGAGTATGTTTCTTCCACCATCTAAACATGTTGAGAAATCAACCGAAGAGCATTATTATGAATCTGAGTGGACGGAAGAGGAGAAGAAGAAGGGTTTGCATCAGCCAAGTCTTAAGTTTGCTGAGAACAGCCGGTCGGAACGTGGCCGGCGTGTTGCTTCCGCTGCGACTCCACCGGACTCTACACCTGCCCATGTTTGA 1593 47.9 MSSIENSPGSSMHGVTGREQTFAFSVASPTVPTDPTAKFSIPVDSEHKSKVFKIFSLQNPHMRTFHLSWTSFFTCFVSTFAAAPLVPIIRENLDLTKTDIGNAGVASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFCMSFVSSAAGYITVRFMIGFSLATFVSCQYWMSTMFNSKIIGFVNGTAAGWGNMGGGATQLLMPLLYEAIKKCGAAPFTAWRIAFFIPGFLHVIMGILVLTLGQDLPDGNLSALQKKGDVAKDKFGKVLWYAVTNYRTWIFVLLYGYSMGVELSTDNVIAEYFFDRFDLKLHTAGIIAASFGMANLVARPFGGYASDYAARYFGMRGRLWILWILQTLGGVFCIWLGLADSLPLAVLAMILFSIGAQAACGATFGIIPFISRRSLGIISGLTGAGGNFGSGLTQLVFFSSSRFSTATGLSLMGVMTVCCTLPVSLVHFPQWGSMFLPPSKHVEKSTEEHYYESEWTEEEKKKGLHQPSLKFAENSRSERGRRVASAATPPDSTPAHV 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5884497 5886324 + Conep05aG0129100.1 Cone5ag1250 438268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1250 530 ProSiteProfiles Major facilitator superfamily (MFS) profile. 64 458 IPR020846 GO:0022857(InterPro)
Cone5ag1250 530 Gene3D MFS general substrate transporter like domains 264 464 IPR036259 -
Cone5ag1250 530 SUPERFAMILY MFS general substrate transporter 56 459 IPR036259 -
Cone5ag1250 530 Pfam Major Facilitator Superfamily 69 425 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Cone5ag1250 530 Gene3D MFS general substrate transporter like domains 57 253 IPR036259 -
Cone5ag1250 530 FunFam High affinity nitrate transporter 57 254 - -
Cone5ag1250 530 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 9 515 IPR044772 GO:0005886(PANTHER)|GO:0015112(PANTHER)|GO:0015112(InterPro)|GO:0015706(PANTHER)|GO:0071249(PANTHER)
Cone5ag1250 530 MobiDBLite consensus disorder prediction 480 513 - -
Cone5ag1250 530 FunFam Nitrate transporter 2.1 265 466 - -
Cone5ag1250 530 MobiDBLite consensus disorder prediction 480 530 - -
Cone5ag1250 530 CDD MFS_NRT2_like 65 458 IPR044772 GO:0015112(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0660 Cone-Chr12:6051670 Cone5ag1250 Cone-Chr5:5884497 4.07E-214 dispersed
Cone2ag0110 Cone-Chr2:538474 Cone5ag1250 Cone-Chr5:5884497 1.87E-155 dispersed
Cone5ag1250 Cone-Chr5:5884497 Cone8ag0681 Cone-Chr8:6818916 7.58E-215 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1250 K02575 - csv:101218244 947.577