Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1260 ATGGTGCCCAAATTACAGCTCAATTTGCAGAGAACATTATTATCCACAGGCTTCGCATACATCACATTATATCTCAAAGTTGCGGATCATTTTGGCACGAGACAGCGGACTGATGGAGACGGGATTTCTATATTTGGATCTAGTAAAATTTGGATTGATCATAATTCTCTATCCTTTTGTGATGGACTTATTGATGCCATTCAAGAGAGTACTGCAATCACCATCTCAAATTACCAAATGAACCATCAGAATGAAGTAATGTTGCTTGGTGCACATGATTCATACTCTCAAGATGCAAGAATGCGAGGAACAATAGCATTCAACCATTTCGGACAAGGCTTGGTTGCAAGAATGCCGAGATGTAGACTGGGTTTCTTCCATGTGGTGAACAATGACTACACACATTGGCTCATGATCAATGCGCCTGAGAGCACGTGGAAGAGTTGGACACGGGTGTCTGAAGGAGATTTGATGGTGAATGGAGCATTCTTCGTTGAATCGGGAAATTCAAGAGAAAGAGCTATTTAG 528 41.48 MVPKLQLNLQRTLLSTGFAYITLYLKVADHFGTRQRTDGDGISIFGSSKIWIDHNSLSFCDGLIDAIQESTAITISNYQMNHQNEVMLLGAHDSYSQDARMRGTIAFNHFGQGLVARMPRCRLGFFHVVNNDYTHWLMINAPESTWKSWTRVSEGDLMVNGAFFVESGNSRERAI 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6004920 6005657 + Conep05aG0130100.1 Cone5ag1260 438278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1260 175 PRINTS Pollen allergen Amb family signature 117 136 IPR018082 -
Cone5ag1260 175 PRINTS Pollen allergen Amb family signature 38 59 IPR018082 -
Cone5ag1260 175 Gene3D - 21 174 IPR012334 -
Cone5ag1260 175 Pfam Pectate lyase 36 135 IPR002022 -
Cone5ag1260 175 SUPERFAMILY Pectin lyase-like 35 168 IPR011050 -
Cone5ag1260 175 PANTHER PECTATE LYASE 18-RELATED 28 138 IPR045032 GO:0030570(InterPro)
Cone5ag1260 175 SMART amb_all 1 170 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag1260 Cone-Chr5:6004920 Cone7ag0370 Cone-Chr7:1620380 1.26E-56 dispersed
Cone1ag1378 Cone-Chr1:56664382 Cone5ag1260 Cone-Chr5:6004920 5.58E-49 wgd
Cone1ag0495 Cone-Chr1:4834236 Cone5ag1260 Cone-Chr5:6004920 2.61E-45 wgd
Cone10ag0217 Cone-Chr10:1059074 Cone5ag1260 Cone-Chr5:6004920 1.77E-51 wgd
Cone11ag1037 Cone-Chr11:8205776 Cone5ag1260 Cone-Chr5:6004920 1.17E-49 wgd
Cone18ag0538 Cone-Chr18:2654646 Cone5ag1260 Cone-Chr5:6004920 5.17E-50 wgd
Cone3ag0244 Cone-Chr3:1304395 Cone5ag1260 Cone-Chr5:6004920 2.42E-52 wgd
Cone5ag0370 Cone-Chr5:1575229 Cone5ag1260 Cone-Chr5:6004920 6.76E-49 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1260 K01728 - csv:101206497 199.904