Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1262 ATGGACCCGAATCAAAACCCTCTAATGCAACTTCACGATTTCGATCCACAAGATTTCGCTGCTGATACAACCCATTTCGACCACCAATTCGTCGACCTAATCCGAGGATCCGAGCATGAAAACCCAATGCTCGATTTCGATCTCGAACTCATCAGTGGCAGCAGCTTCGTCGATTACCCGCCATTTTCTCACGACCCATATCCGTACATGTTCAACTTCAACCCAATCAGAGCCCCGGACCAGAACTCCACGTTCAAGACGCTTGGGAGCTTCGATGAGGAAGAAATGAAAGCCGCGTTAGATTTGGAAGATGACGATGGAGAAGAAGGCTCTTCTGGAACGACCATGAATACTGCCACGACGAAGAGACGGAAAGGTGAGAGGTCAAGGACTTTGATTTCTGAGAGGAGGAGGAGAGGGAGAATGAAGGAGAAGCTTCACGCATTGCGTTCTTTGGTCCCTAATATTACGAAGATGGATAAAGCTTCGATTGTTGGAGATGCTGTGTCGTACGTGCAACATCTTCAGTCACAGGCCAAGCAGCTTAAAGCTGAGATTGCAGGTCTTGAAGCTTCCATGAATGGAGCTGAGAAGTATCAAGGCTCTACTAAAAACCCAAACAAGATTCAAGTACGCCCAAACCAATTAATCCCCAAGAAAATAATTCAGATGGATATCTTTCAGGTTGAAGAAAGAGGGTTCTACATGAGGCTGGTTTGCAATAAAGGGGAAGGAGTGGCCATGCCCCTTTATAGAGTTCTTGAATCTCTGGCAAGCTTCACTGTCCAGAGCTCCAATTTGGCTACTGTTTCTGAGAATTTTGTTCTCACAACTACTCTCAACGTAAAAGATTGTGAGCAAAACCGGGACTTGCAGAATTTGAAGCTGTGGGTCACAGGGGCTCTCCTCAGCCATGGCTTTGAATTCGATTCACCTTTTGCTGCTGCTGCCTAG 954 46.54 MDPNQNPLMQLHDFDPQDFAADTTHFDHQFVDLIRGSEHENPMLDFDLELISGSSFVDYPPFSHDPYPYMFNFNPIRAPDQNSTFKTLGSFDEEEMKAALDLEDDDGEEGSSGTTMNTATTKRRKGERSRTLISERRRRGRMKEKLHALRSLVPNITKMDKASIVGDAVSYVQHLQSQAKQLKAEIAGLEASMNGAEKYQGSTKNPNKIQVRPNQLIPKKIIQMDIFQVEERGFYMRLVCNKGEGVAMPLYRVLESLASFTVQSSNLATVSENFVLTTTLNVKDCEQNRDLQNLKLWVTGALLSHGFEFDSPFAAAA 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6012846 6014617 + Conep05aG0130300.1 Cone5ag1262 438280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1262 317 Coils Coil 172 199 - -
Cone5ag1262 317 MobiDBLite consensus disorder prediction 121 139 - -
Cone5ag1262 317 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 122 192 - -
Cone5ag1262 317 SMART finulus 132 181 IPR011598 GO:0046983(InterPro)
Cone5ag1262 317 Gene3D - 117 192 IPR036638 GO:0046983(InterPro)
Cone5ag1262 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 126 194 IPR036638 GO:0046983(InterPro)
Cone5ag1262 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 175 IPR011598 GO:0046983(InterPro)
Cone5ag1262 317 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 101 306 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cone5ag1262 317 MobiDBLite consensus disorder prediction 103 140 - -
Cone5ag1262 317 Pfam Helix-loop-helix DNA-binding domain 130 176 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag1262 Cone-Chr5:6012846 Cone8ag0471 Cone-Chr8:3119283 1.89E-09 dispersed
Cone1ag0497 Cone-Chr1:4842772 Cone5ag1262 Cone-Chr5:6012846 3.13E-180 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46191 PF00067 p450 1.70E-80 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1262 K26214 - rcu:8275242 295.434