Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1268 ATGGCGTCGGAGAAGCGATGCCACTATGAGGTTCTTGGCCTATCCCTCGAGTGCACCGCCGATGAAATCCGTACGGCATACAGGAAGCTGGCTCTTCAGCGCCACCCAGATAAGCTCGTGCAATCCGGCTTGGCTCAATCAGATGCCACGGCTCAGTTCCAAGAGCTTCAACAAGCCTACGAGGTCCTCTCTGATCCTAAAGAGCGCGCCTGGTACGATTCTCACCGCTCTCAAATTCTCTTCTCCGATCCTAGTTCTGCTGATTCCGTCCCTAACTCAGTCATCCCCAACCTGTTTTCGTTCTTCTCTAAGACCGTCTTTTCTGGATACTCCGACACCGGTAAGGGATTCTACAAAGTTTTTTCTGACGTTTTCAATAAGATTTATGCGAACGAGATTGATTTCGCTAGGAAATTAGGGTTAAGATTGGATTTGATTCGAGAAGCTCCGGTTATGGGGAATTTAGATAGTCCTTATACTCAGGTGACTGCCTTTTATAGCTATTGGCTAGGGTTTGCTACGATCATGGACTTTTGTTGGGTGGATATGTATGATTCCATGGCCGGTCCGAATAGGAAATCGAGGAGAGTGATGGAAGAGGAGAATAAGAAGCTGAGGAAGAAGGCAAAGAAGGACTATAATGAGACTGTAAGGGGCTTGGCCGAGTTTGTGAAGAAGAGAGATAAGAGAGTGATTGATATGGCTATGAAGAGGAACTTGGAGATGGAGAAAAAGAGGGAGGAAGAAAGGGAGAGAAAGAAGAGGATGGAAAGGGAGAGATTGGAGAGATTGGAGAGGGCTATGGCATATGAAGAGCCGGACTGGGTGAAGGTCGGAGAGGCAGATGGTGTTGATTATAATTCGCTATACAAGGAGGAGGAGGAGGAGAAGAGAAAGAAGAGTGAGGAGAAAGAGTTGTACTGTGTGGTGTGTGGGAAGAAATTTAAGAGTGAGAAGCAATGGAAGAATCATGAGCAGTCTAAGAAACATAAAGAGAAGGTTGCTGAGTTCAGAGATTCCATAGCTGATGAGGAAGATGAATATGAAGAAGGAGAAGGAACAGCTATGGAGGAGGACAAGCAGGAAGAGAAGGAGGAGGAGCGGGTGGATGTCAGTATTGATGAATTATCAAAGAGTTTTCAGGAGGGTAATATTGGGATTGAGATTGCACCCGAAGTGGGCAATGAAAGTGGGCCTAATGATGTTAGTGATATAAACAGGGTGGAGAAAGGGGTTAATGAGGTAATTGGGTTGGATCATGAAGATGAAGAAATTGGTGTCCTTGAAGCAATGTTGTCTGGGAGAAAGAATCGGAGAAAAGCGGAGTTTAGGGCTAACCAGCTTCATGTTCATAACAATAGTGAAGATACAACAAGCTTCATGGAATATGATAACCGGAAGAGCACAATAAGGAATAGAGAGTCTAAGAAAGGAATGGCTAAAAGAAATGGGGAAGAAAATTCAAAGGTTGATACAAATAGAAGTAATGCTCAAACCGAGGAACCTAATGGAGATGTTGAGAATTCACGAAAGCTGGAGGAGTCTTCGTGTTCCTTAGCTGATAAAGAGAATGTTGATGAAGGGGGTGATGGTGAGTTAGTGATGAACAAGAAGAAAACTTCTAGTAAAATGTCAGACAGAAAAGAAGAGTTGGCCATGAAGAATGAGGCAAAGATGAAAACTAAAGCTTCAGCCAGAGGCAAGAAATCTAAGGCAACATCGAAGAATGCTGGTAATTTATGCAATACATGTGGGAAAGAGTTTGAATCAAGGAATAAATTGCATGGGCATTTGGAAGAAACTGGGCACGCGTCGGTTAAATATCGATGA 1830 43.99 MASEKRCHYEVLGLSLECTADEIRTAYRKLALQRHPDKLVQSGLAQSDATAQFQELQQAYEVLSDPKERAWYDSHRSQILFSDPSSADSVPNSVIPNLFSFFSKTVFSGYSDTGKGFYKVFSDVFNKIYANEIDFARKLGLRLDLIREAPVMGNLDSPYTQVTAFYSYWLGFATIMDFCWVDMYDSMAGPNRKSRRVMEEENKKLRKKAKKDYNETVRGLAEFVKKRDKRVIDMAMKRNLEMEKKREEERERKKRMERERLERLERAMAYEEPDWVKVGEADGVDYNSLYKEEEEEKRKKSEEKELYCVVCGKKFKSEKQWKNHEQSKKHKEKVAEFRDSIADEEDEYEEGEGTAMEEDKQEEKEEERVDVSIDELSKSFQEGNIGIEIAPEVGNESGPNDVSDINRVEKGVNEVIGLDHEDEEIGVLEAMLSGRKNRRKAEFRANQLHVHNNSEDTTSFMEYDNRKSTIRNRESKKGMAKRNGEENSKVDTNRSNAQTEEPNGDVENSRKLEESSCSLADKENVDEGGDGELVMNKKKTSSKMSDRKEELAMKNEAKMKTKASARGKKSKATSKNAGNLCNTCGKEFESRNKLHGHLEETGHASVKYR 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6046325 6048842 - Conep05aG0130900.1 Cone5ag1268 438286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1268 609 SMART dnaj_3 6 68 IPR001623 -
Cone5ag1268 609 SUPERFAMILY beta-beta-alpha zinc fingers 297 348 IPR036236 -
Cone5ag1268 609 MobiDBLite consensus disorder prediction 460 489 - -
Cone5ag1268 609 MobiDBLite consensus disorder prediction 320 376 - -
Cone5ag1268 609 ProSitePatterns Zinc finger C2H2 type domain signature. 581 603 IPR013087 -
Cone5ag1268 609 PRINTS DnaJ domain signature 9 27 IPR001623 -
Cone5ag1268 609 PRINTS DnaJ domain signature 48 68 IPR001623 -
Cone5ag1268 609 PRINTS DnaJ domain signature 27 42 IPR001623 -
Cone5ag1268 609 CDD DnaJ 7 65 IPR001623 -
Cone5ag1268 609 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 2 609 IPR044648 -
Cone5ag1268 609 MobiDBLite consensus disorder prediction 357 375 - -
Cone5ag1268 609 Coils Coil 327 347 - -
Cone5ag1268 609 ProSiteProfiles dnaJ domain profile. 7 76 IPR001623 -
Cone5ag1268 609 Gene3D DnaJ domain 1 88 IPR036869 -
Cone5ag1268 609 Coils Coil 195 215 - -
Cone5ag1268 609 MobiDBLite consensus disorder prediction 504 563 - -
Cone5ag1268 609 Pfam Zuotin-like, zuotin homology domain 146 231 IPR054076 -
Cone5ag1268 609 ProSiteProfiles Zinc finger C2H2 type domain profile. 579 608 IPR013087 -
Cone5ag1268 609 ProSitePatterns Zinc finger C2H2 type domain signature. 308 330 IPR013087 -
Cone5ag1268 609 MobiDBLite consensus disorder prediction 444 581 - -
Cone5ag1268 609 Pfam DnaJ domain 8 73 IPR001623 -
Cone5ag1268 609 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Cone5ag1268 609 Pfam Zinc-finger double-stranded RNA-binding 306 331 IPR022755 -
Cone5ag1268 609 SMART ZnF_U1_5 303 337 IPR003604 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone5ag1268 609 MobiDBLite consensus disorder prediction 341 356 - -
Cone5ag1268 609 Gene3D Classic Zinc Finger 292 366 - -
Cone5ag1268 609 MobiDBLite consensus disorder prediction 320 340 - -
Cone5ag1268 609 SUPERFAMILY Chaperone J-domain 3 85 IPR036869 -
Cone5ag1268 609 Coils Coil 232 267 - -
Cone5ag1268 609 SMART c2h2final6 579 603 IPR013087 -
Cone5ag1268 609 SMART c2h2final6 306 330 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag1268 Cone-Chr5:6046325 Cone9ag0450 Cone-Chr9:2092575 2.53E-12 dispersed
Cone1ag0500 Cone-Chr1:4872961 Cone5ag1268 Cone-Chr5:6046325 4.59E-144 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46193 PF01031 Dynamin_M 8.60E-20 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1268 K09506 - mdm:103437883 642.499