Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1280 ATGGATCAAGACCAAGATGATTCAAGTGTGATTTCCACCGCAAAGATGAACGTTTTGATCGAAAGCACTTCAGACGATAACTCAAACAACAACAACAACAACAACAACAGAAATAATATATCGAACAAGCGACCGAGGCATGATGTTTCCCCAAAATTCAAAGGGGTTGTTTCACAACAAAACGGCCATTGGGGAGCACAAATATATGCAAACCATCAAAGGATTTGGCTCGGAACCTTTAAATCGGAGAAAGAGGCGGCCATGGCTTATGATAGCGCTTCGATCAAACTTAGGAGCGGTGATAATTATACTGCGTCACATCGCAATTTTCCATGCACAAAGAGCACTTCTGAGGAGCATAATTTCCAAAACCAATATACAACAGAAGTTGTACTTAACATGATAAGAGATGGGTCATATCCATCAAAATTTGCAGCCTTTTTGAGGGCTCTATCGCAAAAAGAAGTGGGTATCAGTCTCAAGCGAACTAGGGTTCATGGGTACGGTTCAAAATTTTCGTGTGCCCAACTTTTCCAAAAGGAATTGACACCAAGTGATGTGGGTAAGCTTAATAGACTTGTTATTCCAAAGAAATATGCCGTCAAGTATTTTCCATGCATTAGTGATAATCAAAATGCGGACGAACTTACTTACAACAACAACGACAATAATGACGGTGGGGTTAATACAGAAGATATTGAGCTTTCTTTCTATGATAGGATGATAAAGTTATGGAAATTTCGATATTGTTATTGGAAGAGTAGCCAAAGTTTTGTTTTTACGCGTGGATGGAACCGATTCGTGAAGGAGAAGAAATTGAAGGCAAACGATGTTATTATGTTCTATACGTGTGAAGAAGGTGATAAGGAAGATAATCATCAAAAGGGCAATGCATTTTGCTTAATTGATGTGATTTATAGTAGTAGCGGAAATGTTCAAGACCAAGGAAAAAGTTGTAATAATTTTCCGGGTCATCATCATGATCAAGATCATGTTAATTATCAGTTCAATGAGATGCAGATGGAGTTGGAAAATCATTTGGGCAGTGTTTTTGGGAGTAAAAATAGTATAGAAGAGGGTACTTATCATGATCATAAGGAGGAAGAACGTTGTCAAGAGAAGAAGATTTTGAATGGTTTAAGCGCATGTCAAAGTGTTGGAGAAAAAGGGTTTAAGCTCTTCGGGGTGCATATTAAATGA 1200 38.08 MDQDQDDSSVISTAKMNVLIESTSDDNSNNNNNNNNRNNISNKRPRHDVSPKFKGVVSQQNGHWGAQIYANHQRIWLGTFKSEKEAAMAYDSASIKLRSGDNYTASHRNFPCTKSTSEEHNFQNQYTTEVVLNMIRDGSYPSKFAAFLRALSQKEVGISLKRTRVHGYGSKFSCAQLFQKELTPSDVGKLNRLVIPKKYAVKYFPCISDNQNADELTYNNNDNNDGGVNTEDIELSFYDRMIKLWKFRYCYWKSSQSFVFTRGWNRFVKEKKLKANDVIMFYTCEEGDKEDNHQKGNAFCLIDVIYSSSGNVQDQGKSCNNFPGHHHDQDHVNYQFNEMQMELENHLGSVFGSKNSIEEGTYHDHKEEERCQEKKILNGLSACQSVGEKGFKLFGVHIK 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7047203 7048402 - Conep05aG0132100.1 Cone5ag1280 438298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1280 399 SUPERFAMILY DNA-binding pseudobarrel domain 177 287 IPR015300 -
Cone5ag1280 399 Gene3D AP2/ERF domain 52 113 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag1280 399 SMART B3_2 178 297 IPR003340 GO:0003677(InterPro)
Cone5ag1280 399 ProSiteProfiles B3 DNA-binding domain profile. 178 308 IPR003340 GO:0003677(InterPro)
Cone5ag1280 399 MobiDBLite consensus disorder prediction 21 51 - -
Cone5ag1280 399 Pfam B3 DNA binding domain 178 286 IPR003340 GO:0003677(InterPro)
Cone5ag1280 399 Gene3D - 173 300 IPR015300 -
Cone5ag1280 399 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 52 397 IPR044800 GO:0003700(InterPro)
Cone5ag1280 399 FunFam AP2 domain-containing protein RAP2.8 51 112 - -
Cone5ag1280 399 CDD AP2 51 111 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag1280 399 MobiDBLite consensus disorder prediction 21 40 - -
Cone5ag1280 399 SUPERFAMILY DNA-binding domain 52 103 IPR016177 GO:0003677(InterPro)
Cone5ag1280 399 CDD B3_DNA 177 282 IPR003340 GO:0003677(InterPro)
Cone5ag1280 399 ProSiteProfiles AP2/ERF domain profile. 52 111 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag1280 399 SMART rav1_2 52 117 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0854 Cone-Chr19:6703569 Cone5ag1280 Cone-Chr5:7047203 4.73E-48 dispersed
Cone5ag1280 Cone-Chr5:7047203 Cone9ag0480 Cone-Chr9:2293951 3.74E-53 dispersed
Cone1ag0418 Cone-Chr1:3672787 Cone5ag1280 Cone-Chr5:7047203 1.85E-225 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46196 PF02605 PsaL 3.00E-58 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1280 K09287 - mdm:103401573 348.206