Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1280 ATGGATCAAGACCAAGATGATTCAAGTGTGATTTCCACCGCAAAGATGAACGTTTTGATCGAAAGCACTTCAGACGATAACTCAAACAACAACAACAACAACAACAACAGAAATAATATATCGAACAAGCGACCGAGGCATGATGTTTCCCCAAAATTCAAAGGGGTTGTTTCACAACAAAACGGCCATTGGGGAGCACAAATATATGCAAACCATCAAAGGATTTGGCTCGGAACCTTTAAATCGGAGAAAGAGGCGGCCATGGCTTATGATAGCGCTTCGATCAAACTTAGGAGCGGTGATAATTATACTGCGTCACATCGCAATTTTCCATGCACAAAGAGCACTTCTGAGGAGCATAATTTCCAAAACCAATATACAACAGAAGTTGTACTTAACATGATAAGAGATGGGTCATATCCATCAAAATTTGCAGCCTTTTTGAGGGCTCTATCGCAAAAAGAAGTGGGTATCAGTCTCAAGCGAACTAGGGTTCATGGGTACGGTTCAAAATTTTCGTGTGCCCAACTTTTCCAAAAGGAATTGACACCAAGTGATGTGGGTAAGCTTAATAGACTTGTTATTCCAAAGAAATATGCCGTCAAGTATTTTCCATGCATTAGTGATAATCAAAATGCGGACGAACTTACTTACAACAACAACGACAATAATGACGGTGGGGTTAATACAGAAGATATTGAGCTTTCTTTCTATGATAGGATGATAAAGTTATGGAAATTTCGATATTGTTATTGGAAGAGTAGCCAAAGTTTTGTTTTTACGCGTGGATGGAACCGATTCGTGAAGGAGAAGAAATTGAAGGCAAACGATGTTATTATGTTCTATACGTGTGAAGAAGGTGATAAGGAAGATAATCATCAAAAGGGCAATGCATTTTGCTTAATTGATGTGATTTATAGTAGTAGCGGAAATGTTCAAGACCAAGGAAAAAGTTGTAATAATTTTCCGGGTCATCATCATGATCAAGATCATGTTAATTATCAGTTCAATGAGATGCAGATGGAGTTGGAAAATCATTTGGGCAGTGTTTTTGGGAGTAAAAATAGTATAGAAGAGGGTACTTATCATGATCATAAGGAGGAAGAACGTTGTCAAGAGAAGAAGATTTTGAATGGTTTAAGCGCATGTCAAAGTGTTGGAGAAAAAGGGTTTAAGCTCTTCGGGGTGCATATTAAATGA 1200 38.08 MDQDQDDSSVISTAKMNVLIESTSDDNSNNNNNNNNRNNISNKRPRHDVSPKFKGVVSQQNGHWGAQIYANHQRIWLGTFKSEKEAAMAYDSASIKLRSGDNYTASHRNFPCTKSTSEEHNFQNQYTTEVVLNMIRDGSYPSKFAAFLRALSQKEVGISLKRTRVHGYGSKFSCAQLFQKELTPSDVGKLNRLVIPKKYAVKYFPCISDNQNADELTYNNNDNNDGGVNTEDIELSFYDRMIKLWKFRYCYWKSSQSFVFTRGWNRFVKEKKLKANDVIMFYTCEEGDKEDNHQKGNAFCLIDVIYSSSGNVQDQGKSCNNFPGHHHDQDHVNYQFNEMQMELENHLGSVFGSKNSIEEGTYHDHKEEERCQEKKILNGLSACQSVGEKGFKLFGVHIK 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7047203 7048402 - Conep05aG0132100.1 Cone5ag1280 438298

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1280 399 SUPERFAMILY DNA-binding pseudobarrel domain 177 287 IPR015300 -
Cone5ag1280 399 Gene3D AP2/ERF domain 52 113 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag1280 399 SMART B3_2 178 297 IPR003340 GO:0003677(InterPro)
Cone5ag1280 399 ProSiteProfiles B3 DNA-binding domain profile. 178 308 IPR003340 GO:0003677(InterPro)
Cone5ag1280 399 MobiDBLite consensus disorder prediction 21 51 - -
Cone5ag1280 399 Pfam B3 DNA binding domain 178 286 IPR003340 GO:0003677(InterPro)
Cone5ag1280 399 Gene3D - 173 300 IPR015300 -
Cone5ag1280 399 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 52 397 IPR044800 GO:0003700(InterPro)
Cone5ag1280 399 FunFam AP2 domain-containing protein RAP2.8 51 112 - -
Cone5ag1280 399 CDD AP2 51 111 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag1280 399 MobiDBLite consensus disorder prediction 21 40 - -
Cone5ag1280 399 SUPERFAMILY DNA-binding domain 52 103 IPR016177 GO:0003677(InterPro)
Cone5ag1280 399 CDD B3_DNA 177 282 IPR003340 GO:0003677(InterPro)
Cone5ag1280 399 ProSiteProfiles AP2/ERF domain profile. 52 111 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag1280 399 SMART rav1_2 52 117 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1280 K09287 - - mdm:103401573 348.206
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0854 Cone-Chr19:6703569 Cone5ag1280 Cone-Chr5:7047203 4.73E-48 dispersed
Cone5ag1280 Cone-Chr5:7047203 Cone9ag0480 Cone-Chr9:2293951 3.74E-53 dispersed
Cone1ag0418 Cone-Chr1:3672787 Cone5ag1280 Cone-Chr5:7047203 1.85E-225 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone19ag1137 . 83 205 RAV Transcription Factor Family AT2G36080 73.2 3.6e-45 178.7
Cone13ag1158 . 83 198 RAV Transcription Factor Family AT2G36080 74.1 3.1e-44 175.6
Cone14ag0476 . 119 247 RAV Transcription Factor Family AT2G36080 62.9 1.0e-39 160.6
Cone14ag0476 . 119 364 RAV Transcription Factor Family AT2G46870 54.2 1.0e-58 224.6
Cone13ag0853 . 188 317 RAV Transcription Factor Family AT2G46870 63.8 1.4e-39 161.0
Cone19ag0854 . 185 311 RAV Transcription Factor Family AT2G46870 63.0 1.2e-38 157.9
Cone9ag0480 . 205 319 RAV Transcription Factor Family AT2G46870 65.3 1.0e-37 154.8
Cone6ag0468 . 205 316 RAV Transcription Factor Family AT2G46870 65.2 2.9e-37 153.3
Cone19ag1137 . 83 198 RAV Transcription Factor Family AT2G46870 64.7 6.5e-37 152.1
Cone19ag1137 . 83 208 RAV Transcription Factor Family AT3G11580 72.7 2.4e-44 176.4
Cone13ag1158 . 83 215 RAV Transcription Factor Family AT3G11580 68.3 7.6e-43 171.4
Cone14ag0476 . 119 269 RAV Transcription Factor Family AT3G11580 54.0 1.9e-41 166.8
Cone14ag0476 . 108 364 RAV Transcription Factor Family AT3G61970 50.2 1.0e-55 214.5
Cone13ag0853 . 186 316 RAV Transcription Factor Family AT3G61970 62.6 1.9e-38 157.1
Cone19ag1137 . 83 198 RAV Transcription Factor Family AT3G61970 63.8 1.3e-37 154.5
Cone13ag1158 . 83 198 RAV Transcription Factor Family AT3G61970 62.9 2.1e-37 153.7
Cone6ag0468 . 201 316 RAV Transcription Factor Family AT3G61970 64.7 6.2e-37 152.1
Cone19ag0854 . 183 311 RAV Transcription Factor Family AT3G61970 60.5 1.8e-36 150.6
Cone9ag0480 . 201 319 RAV Transcription Factor Family AT3G61970 62.2 2.4e-36 150.2
Cone13ag1158 . 82 308 RAV Transcription Factor Family AT5G06250 50.7 1.2e-47 187.6
Cone9ag0480 . 205 332 RAV Transcription Factor Family AT5G06250 61.5 9.5e-37 151.4
Cone5ag1280 . 52 312 RAV Transcription Factor Family AT1G50680 61.4 3.0e-80 296.2
Cone1ag0418 . 48 368 RAV Transcription Factor Family AT1G50680 52.1 5.3e-77 285.4
Cone5ag1280 . 52 311 RAV Transcription Factor Family AT1G51120 60.2 6.3e-81 298.5
Cone1ag0418 . 48 368 RAV Transcription Factor Family AT1G51120 52.0 2.5e-77 286.6
Cone13ag0853 . 4 364 RAV Transcription Factor Family AT1G13260 61.4 5.0e-107 385.2
Cone19ag0854 . 4 362 RAV Transcription Factor Family AT1G13260 61.7 4.3e-106 382.1
Cone9ag0480 . 1 374 RAV Transcription Factor Family AT1G13260 58.7 9.8e-103 370.9
Cone6ag0468 . 1 367 RAV Transcription Factor Family AT1G13260 58.9 1.3e-102 370.5
Cone14ag0476 . 112 228 RAV Transcription Factor Family AT1G13260 66.9 2.9e-38 156.8
Cone9ag0480 . 18 372 RAV Transcription Factor Family AT3G25730 57.7 1.7e-96 350.1
Cone19ag0854 . 1 326 RAV Transcription Factor Family AT3G25730 60.3 1.9e-95 346.7
Cone6ag0468 . 32 336 RAV Transcription Factor Family AT3G25730 63.0 3.3e-95 345.9
Cone13ag0853 . 1 328 RAV Transcription Factor Family AT3G25730 60.6 2.1e-94 343.2
Cone19ag0854 . 4 363 RAV Transcription Factor Family AT1G68840 59.5 7.0e-104 374.8
Cone6ag0468 . 1 368 RAV Transcription Factor Family AT1G68840 57.9 9.1e-104 374.4
Cone13ag0853 . 4 365 RAV Transcription Factor Family AT1G68840 57.6 1.0e-102 370.9
Cone9ag0480 . 1 375 RAV Transcription Factor Family AT1G68840 57.4 2.2e-102 369.8
Cone14ag0476 . 120 242 RAV Transcription Factor Family AT1G68840 64.8 6.0e-39 159.1
Cone9ag0480 . 18 372 RAV Transcription Factor Family AT3G25730 57.7 1.7e-96 350.1
Cone19ag0854 . 1 326 RAV Transcription Factor Family AT3G25730 60.3 1.9e-95 346.7
Cone6ag0468 . 32 336 RAV Transcription Factor Family AT3G25730 63.0 3.3e-95 345.9
Cone13ag0853 . 1 328 RAV Transcription Factor Family AT3G25730 60.6 2.1e-94 343.2
Cone5ag1280 . 52 311 RAV Transcription Factor Family AT1G51120 60.2 6.3e-81 298.5
Cone1ag0418 . 48 368 RAV Transcription Factor Family AT1G51120 52.0 2.5e-77 286.6
Cone19ag1137 . 83 208 RAV Transcription Factor Family AT3G11580 72.7 2.4e-44 176.4
Cone13ag1158 . 83 215 RAV Transcription Factor Family AT3G11580 68.3 7.6e-43 171.4
Cone14ag0476 . 119 269 RAV Transcription Factor Family AT3G11580 54.0 1.9e-41 166.8
Cone19ag1137 . 83 205 RAV Transcription Factor Family AT2G36080 73.2 3.6e-45 178.7
Cone13ag1158 . 83 198 RAV Transcription Factor Family AT2G36080 74.1 3.1e-44 175.6
Cone14ag0476 . 119 247 RAV Transcription Factor Family AT2G36080 62.9 1.0e-39 160.6
Cone13ag1158 . 82 308 RAV Transcription Factor Family AT5G06250 50.7 1.2e-47 187.6
Cone9ag0480 . 205 332 RAV Transcription Factor Family AT5G06250 61.5 9.5e-37 151.4
Cone14ag0476 . 119 364 RAV Transcription Factor Family AT2G46870 54.2 1.0e-58 224.6
Cone13ag0853 . 188 317 RAV Transcription Factor Family AT2G46870 63.8 1.4e-39 161.0
Cone19ag0854 . 185 311 RAV Transcription Factor Family AT2G46870 63.0 1.2e-38 157.9
Cone9ag0480 . 205 319 RAV Transcription Factor Family AT2G46870 65.3 1.0e-37 154.8
Cone6ag0468 . 205 316 RAV Transcription Factor Family AT2G46870 65.2 2.9e-37 153.3
Cone19ag1137 . 83 198 RAV Transcription Factor Family AT2G46870 64.7 6.5e-37 152.1
Cone5ag1280 . 52 312 RAV Transcription Factor Family AT1G50680 61.4 3.0e-80 296.2
Cone1ag0418 . 48 368 RAV Transcription Factor Family AT1G50680 52.1 5.3e-77 285.4
Cone14ag0476 . 108 364 RAV Transcription Factor Family AT3G61970 50.2 1.0e-55 214.5
Cone13ag0853 . 186 316 RAV Transcription Factor Family AT3G61970 62.6 1.9e-38 157.1
Cone19ag1137 . 83 198 RAV Transcription Factor Family AT3G61970 63.8 1.3e-37 154.5
Cone13ag1158 . 83 198 RAV Transcription Factor Family AT3G61970 62.9 2.1e-37 153.7
Cone6ag0468 . 201 316 RAV Transcription Factor Family AT3G61970 64.7 6.2e-37 152.1
Cone19ag0854 . 183 311 RAV Transcription Factor Family AT3G61970 60.5 1.8e-36 150.6
Cone9ag0480 . 201 319 RAV Transcription Factor Family AT3G61970 62.2 2.4e-36 150.2
Cone13ag0853 . 4 364 RAV Transcription Factor Family AT1G13260 61.4 5.0e-107 385.2
Cone19ag0854 . 4 362 RAV Transcription Factor Family AT1G13260 61.7 4.3e-106 382.1
Cone9ag0480 . 1 374 RAV Transcription Factor Family AT1G13260 58.7 9.8e-103 370.9
Cone6ag0468 . 1 367 RAV Transcription Factor Family AT1G13260 58.9 1.3e-102 370.5
Cone14ag0476 . 112 228 RAV Transcription Factor Family AT1G13260 66.9 2.9e-38 156.8
Cone19ag0854 . 4 363 RAV Transcription Factor Family AT1G68840 59.5 7.0e-104 374.8
Cone6ag0468 . 1 368 RAV Transcription Factor Family AT1G68840 57.9 9.1e-104 374.4
Cone13ag0853 . 4 365 RAV Transcription Factor Family AT1G68840 57.6 1.0e-102 370.9
Cone9ag0480 . 1 375 RAV Transcription Factor Family AT1G68840 57.4 2.2e-102 369.8
Cone14ag0476 . 120 242 RAV Transcription Factor Family AT1G68840 64.8 6.0e-39 159.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002261 1 6 1 2 2 2 3 2 1 2 2 2 3 2 1 3 2 2 3 2 2 2 2 2 2 2 2 3 1 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46196 PF02605 PsaL 3.00E-58 No_clan Cone TF