Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1304 ATGTTTGAATTCGACGAAGAGGAAGAAGAGCACCTGATCGGGGAAGGTAAGATGGCGCAGTCTGTCGTGTTATTGAGCAGCAGTGATGAGGAGGAGGCGAACGAAGATCTCAGCTTGAAGATCATTGAGAAATCGATTCGAATTCGTGAATCGGAGCTTGTTTCAGACAACGACGGATGCAATGACCTCGTCTTTAGGGAACCTGGGTGTAACAATGGCGGTGCAGGGGTAGAATATGTCAATTTGTGTTCTCCATCTCCAGAAGATGTTAAAGGTAGTGAGGGAGCTAAAGGGATTATTGCACGGGGGCTGGAAAATTTGGGAGAAAAGAGTACGAGGAAGAAGCTGAAGAAGAGGAAGAACAAGGTTGAGAAGATTGAAACTGTAGAAGGCAGCGTGGGGATTCCTAGTGTAGAAGATAAGACAGAGGCAGTTGAAGCTGCTGATGTAGTTGGGTCACTGGAACTGAATGCCATTGATACAACTGACAATTCTATATTCAGGAAGCTTATAAGAGGGCCGAGGTATTTTGATCCTCCTCAAAGCAATTGGGGAAAATGCTATAATTGTGATGAAGAAGGTCATATTGCGGCCAACTGTGCATCGGCTAAACGGAATAAACCATGCTATATCTGTGGGAGTTTGGAGCACAATGCCAAGACATGCTCAAAGGGACAAGATTGCTTTATTTGCAAAAAATCAGGGCACTGGGCAAAAGATTGTCCAGAGAAGTACAAGAATAGCTCTTTGAGCTTGCAAATATGTTTAAAATGTGGAGATGCTGGGCATGAGATGTATTCATGCAACAATGCATATTCATTTGATGATCTCGAGAGTATACAGTGTTATGTCTGTAAGAATATCGGCCATTTATGCTGTTTTAATTCTCAAGATACTGCTCCACGTGGAATTTCTTGTTACAGATGTGGTCAACTGGGACACACTGGCTTGGCATGCACAAGGTTATATGGAGAAGCTGCGGAAACAGGATCCGCTAGTACGTGCTTTAAATGTCATGGACAAGGCCATTTTGCTCGTGAATGTACAAGTGCCATGGTGAACAAGAGGAGTTATGAGGCAGCAACCCCAACTCGAAGATTTCGTCAAGAGGGGAAAAGCTACTTGGGGTCCCACTCTGCATCTATAGGGTCTCATAGTTCATGCTTTACTTGCGGTGAAGAAGGTCATTTTGCTCGTGAATGCACAAGTTCTGTCAAGGTTAGGATAAGGAATCATGAGAAATATCACAGAGAAGACTACTCAGGATTAAAGTCTGCACCCTACGACTTTGGTGGGTCCAATAGAAAGAAAAAATCAAGATATGAAGAAAAGGACACTTCAACACCTCGAAAATCAAAACACAGAGGTGGGTGGATTATGGAGGATCCTGAAGACTTCACCTCCCATAAGATGTTCAGAAAGAAGCATCAGAGTTCTCCTATAACCCCACCTACTAAGGGTCGTTGGAATTCTTCAAATGCTGGTCGTTTTACAGGTTCTAGGTCTCCTGCAAAGAAGGAGAAGAGCCATTCACGAACTCCTATATCACATGGATCTAGTAAATCATATCAGCATGGATATTCATCAAGAAGATTTGACAATAACGGCGGTCGTGGTGGGACAAGGAGAAATTATGATTGGTGGTAG 1647 43.47 MFEFDEEEEEHLIGEGKMAQSVVLLSSSDEEEANEDLSLKIIEKSIRIRESELVSDNDGCNDLVFREPGCNNGGAGVEYVNLCSPSPEDVKGSEGAKGIIARGLENLGEKSTRKKLKKRKNKVEKIETVEGSVGIPSVEDKTEAVEAADVVGSLELNAIDTTDNSIFRKLIRGPRYFDPPQSNWGKCYNCDEEGHIAANCASAKRNKPCYICGSLEHNAKTCSKGQDCFICKKSGHWAKDCPEKYKNSSLSLQICLKCGDAGHEMYSCNNAYSFDDLESIQCYVCKNIGHLCCFNSQDTAPRGISCYRCGQLGHTGLACTRLYGEAAETGSASTCFKCHGQGHFARECTSAMVNKRSYEAATPTRRFRQEGKSYLGSHSASIGSHSSCFTCGEEGHFARECTSSVKVRIRNHEKYHREDYSGLKSAPYDFGGSNRKKKSRYEEKDTSTPRKSKHRGGWIMEDPEDFTSHKMFRKKHQSSPITPPTKGRWNSSNAGRFTGSRSPAKKEKSHSRTPISHGSSKSYQHGYSSRRFDNNGGRGGTRRNYDWW 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7389395 7394663 - Conep05aG0134600.1 Cone5ag1304 438322

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1304 548 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 14 380 - -
Cone5ag1304 548 ProSiteProfiles Zinc finger CCHC-type profile. 335 350 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone5ag1304 548 ProSiteProfiles Zinc finger CCHC-type profile. 228 243 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone5ag1304 548 MobiDBLite consensus disorder prediction 478 499 - -
Cone5ag1304 548 Gene3D - 381 440 - -
Cone5ag1304 548 Gene3D - 328 370 - -
Cone5ag1304 548 Gene3D - 227 274 - -
Cone5ag1304 548 ProSiteProfiles Zinc finger CCHC-type profile. 388 403 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone5ag1304 548 MobiDBLite consensus disorder prediction 425 548 - -
Cone5ag1304 548 Gene3D - 275 322 - -
Cone5ag1304 548 Gene3D - 179 226 - -
Cone5ag1304 548 SUPERFAMILY Retrovirus zinc finger-like domains 370 405 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone5ag1304 548 ProSiteProfiles Zinc finger CCHC-type profile. 306 321 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone5ag1304 548 MobiDBLite consensus disorder prediction 431 472 - -
Cone5ag1304 548 SUPERFAMILY Retrovirus zinc finger-like domains 225 271 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone5ag1304 548 ProSiteProfiles Zinc finger CCHC-type profile. 186 200 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone5ag1304 548 Pfam Zinc knuckle 334 350 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone5ag1304 548 Pfam Zinc knuckle 185 201 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone5ag1304 548 Pfam Zinc knuckle 387 403 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone5ag1304 548 Pfam Zinc knuckle 228 243 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone5ag1304 548 MobiDBLite consensus disorder prediction 515 535 - -
Cone5ag1304 548 SMART c2hcfinal6 186 202 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone5ag1304 548 SMART c2hcfinal6 334 350 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone5ag1304 548 SMART c2hcfinal6 208 224 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone5ag1304 548 SMART c2hcfinal6 254 270 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone5ag1304 548 SMART c2hcfinal6 305 321 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone5ag1304 548 SMART c2hcfinal6 227 243 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone5ag1304 548 SMART c2hcfinal6 387 403 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone5ag1304 548 SUPERFAMILY Retrovirus zinc finger-like domains 297 352 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone5ag1304 548 SUPERFAMILY Retrovirus zinc finger-like domains 181 225 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1304 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0396 Cone-Chr1:3445794 Cone5ag1304 Cone-Chr5:7389395 5.29E-185 wgd
Cone18ag0148 Cone-Chr18:770545 Cone5ag1304 Cone-Chr5:7389395 6.94E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g13 . . . . . . Bma14g00739 Bma07g01367 . . . . . . . Cpe05g00567 . . . . . . . . Cla02g02367 Cam02g2518 Cec02g2565 Cco02g2594 Clacu02g2492 Cmu02g2423 Cre02g2741 . Cone5ag1304 Cone18ag0007 Cone11ag1586 . . Chy05g00007 Cme05g00009 . . Bda07g00775 Bda09g00342 . Bpe11g00949 . . Sed01g3428 Cmo02g01195 Cmo20g00006 Cma02g01161 Cma20g00006 Car02g00961 Car20g00004 Cpe16g00942 . Bhi10g00488 Tan07g0564 Cmetu05g1641 . Hepe08g0007 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005163 0 5 1 1 0 1 2 1 1 1 1 1 2 1 1 3 1 3 1 1 1 1 1 1 1 1 1 2 1 2 40