Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1309 ATGGCGGATATTAGGAAGTGGTTCATGAAGTCCCATGAAAAAGGCGGAACTACTTCAAACAATTCAGGGAAACTTGCGCCAGCTAAGCCACAACCTGAAAAACCAGTTCAAGGAGATCGAGAAAGTTCAGGTAGACGGAAAACTAGCAAGTATTTTGCTAAAGAACATCGGAAGCCCAAAGATGAAAAAGAAACAGAGGAACTTCCGGCCAAAAGAAAGACTTTAAAGGATAGTGAGGAATCACCAAAGAATCAACCTTCAAAAAAAATTCACAAAGTTAGGGATGATGATGACTTTGTTGATGTCACTCCTACAAAAAAGCTGAAAAGTGATTCAGGTAAAGGAATTTCACAGAAGTCTGTAGAAGTTGAAGAAAGCGAAGAAGATGAATACAAAGTTAAGGAATCCCCTCTTAAGTCTGTTGGAAGGGGTCGGGGTGGGAGAGGTTCATCAGTTGGGTCAGCTGGTGGAAGAGGTAGAGGAATAGGTCGAGAATCTGTAGAAGTTGAAGGAAGCAATGAAGAGGAAGATGGAGATAGTGAATTCCCTGCTAAGTCTGGTGGAAGGGGTCGGGGTGGAAGAGGTTCATCAGTGGCACCAGCTGGTGGAAGAGGTAGAGGAGGTGGACGAGGTGGTTTCATGAATTTCGGAGAGAGGAAAGATCCTCCACACAAAGGGGAAAAGGAAGCCCCTGAAGGTACTCCTGACTGTTTAGCTGGTCTAACTTTCGTGATTAGTGGAACACTTGACAGTTTGGAACGCGAAGAAGCGGAAGATTTGATTAAACGTCATGGTGGTCGTGTGACCGGATCTATTAGCAAGAAAACGAATTATCTTTTGTGTGATGAAGATATTGGTGGACGGAAATCCTCCAAAGCCAAAGAACTTGGGACTGCTTTTCTCACTGAGGATGGGTTATTTGATAAAATACGTGCATCAAAACATTCGAAAGCACCTGTACAGGGAGCGCACAAGCAGCCCCTGGGTAAGGCTGTTGAACCTGTACCAAACAAAACTGCCCAGAAAGTAGACAAAAAGAAAGATAGCATCAGCAGCACCTTGGATACCAGCGCTATCCGTAAAAATCCGACTTCTGGTGCTTCCCCTGCAAAGATCAAAAGTTGGACCACTGGACAGTCTTCAATGACTTGGACAGAAAAATATAGGCCAAAGGTTCCCAACGACATTGTTGGAAATCAATCCCTGGTCAAACAACTGCATGATTGGTTGGCACATTGGAGTGATAATTTTCTTGGTACTGGGAATAAGGAAAAGGGTAAGAAACAAAATGATTTTGACACCAAAAAAGCTGTCTTGTTAAGTGGAACACCTGGCATAGGGAAAACTACATCAGCGAAGTTGGTCAGTCAGATGCTCGGTTTCCAGGCAATAGAGGTAAATGCCAGTGATACTCGTGGTAAAGCTGATTTAAAGATTGAAAAAGGAATTGGTGGAAGCAATGCGAATTCCATTAAGGAACTTGTCAGTAACACTGCCCTAAGCATAAACATGGATAGGTCAAGCCATACAAAAACTGTGTTGATTATGGATGAAGTTGATGGGATGTCTGCAGGAGATAGGGGAGGAGTCACTGATCTGATTGCTAGCATCAAGATTTCCAAAATACCGATTATCTGCATCTGTAATGACCGCTACAGCCAGAAACTTAAAAGCCTTGTGAACTATTGTTTGCTTCTCAGTTTTAGAAAACCTACAAAGCAACAGATGGCAAAGAGATTAATGCAAATTGCAAATGCCGAAGGCCTTAAAGTTAATGAGATTGCTCTTGAGGAGCTTGCAGAAAGAGTTAATGGGGATTTGCGGATGGCGGTAAACTGTTTACAGTACATGAGCTTGTCAATGTCGGTGATTCAATATGATGACATCCGTCAGCGCCTTCTTTACAGTGCCAAGGATGAGGATATATCACCATTCACAGCTGTTGATAAGCTGTTTGGTTTCAGTGGAGGGAAGTTAAGGATGGATGAACGGATTGACCTAAGCATGAGTGATCCGGATCTAGTCCCTCTTCTTGTTCAGGAAAATTATCTAAATTATAGGCCAAGTTCAGTCGGTAAGGATGACAATGGGATCAAACGCATGGATGCAATTGCCCGTGCTTCTGAATCTATTGGTAATGGGGATATTATCAATGTACAGATTAGAAGATATAGGCAGTGGCAACTCTCTCAAAGCGGTTCACTTGCATCTTGCATAATTCCTGCTGCACTGTTGCATGGACAAAGGGAGACACTTGAACCGGGAGAAAGGAATTTCAATAGATTTGGTGGCTGGTTGGGAAAAAACTCAACCATGGGCAAGAACATGAGGCTTTTGGAGGACATGCATGTCCATATTCTTGCCTCTCGTGAATCTGGTTCGGGCAGAGGAACTCTGCGAGTTGAATACCTTACTCTTCTTTTGAAAAGGCTGACTGAGCCACTTCGTACACTACCCAAGGATGAAGCTGTTCGGAATGTCGTAGAGTTTATGAATTTGTACTCAATCAGTCAGGATGATTTTGATACAATCGTAGAGTTATCAAAATTTAAGGGCCATGCAAATCCTCTAGAAGGCATACAGCCTGCTGTTAAAGCAGCTCTGACAAAAGCATATAAAGAAGGAAGCAAAATGCGAATGGTAAGGGCTGCAGATCTAGTGACACTTCCAGGAATGAAGAAGGCCCCTAAGAAGCGGATTCAAGCAATTCTTGAGCCAGCTGAGGATGGATTGGGAGAAAATGGTGGTGGTGGTGCTGAAATGTTGGTTGAAAGCGAAGAAGAAAACACTTCAGATACGGAAGGCTTGGAAAACGGCGGCAATGCTGAGAAGCTGCAGTCAGAACTTAAAAGTTTGAATTCGAAAGGAGTGCAAGTGCAGTTGGACCTGAAGGGCATTGGAAATTCGAGCACCAAGAAACCAGCTGGCAGAGGAAGAGGAGGTGGTTTGAGGGGAGCTTCAGAGAAGAAAGTGGGTCGTGGTTCGGGCTCCACTACCAAGAGAAAGAGATGA 3012 43.69 MADIRKWFMKSHEKGGTTSNNSGKLAPAKPQPEKPVQGDRESSGRRKTSKYFAKEHRKPKDEKETEELPAKRKTLKDSEESPKNQPSKKIHKVRDDDDFVDVTPTKKLKSDSGKGISQKSVEVEESEEDEYKVKESPLKSVGRGRGGRGSSVGSAGGRGRGIGRESVEVEGSNEEEDGDSEFPAKSGGRGRGGRGSSVAPAGGRGRGGGRGGFMNFGERKDPPHKGEKEAPEGTPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSISKKTNYLLCDEDIGGRKSSKAKELGTAFLTEDGLFDKIRASKHSKAPVQGAHKQPLGKAVEPVPNKTAQKVDKKKDSISSTLDTSAIRKNPTSGASPAKIKSWTTGQSSMTWTEKYRPKVPNDIVGNQSLVKQLHDWLAHWSDNFLGTGNKEKGKKQNDFDTKKAVLLSGTPGIGKTTSAKLVSQMLGFQAIEVNASDTRGKADLKIEKGIGGSNANSIKELVSNTALSINMDRSSHTKTVLIMDEVDGMSAGDRGGVTDLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLMQIANAEGLKVNEIALEELAERVNGDLRMAVNCLQYMSLSMSVIQYDDIRQRLLYSAKDEDISPFTAVDKLFGFSGGKLRMDERIDLSMSDPDLVPLLVQENYLNYRPSSVGKDDNGIKRMDAIARASESIGNGDIINVQIRRYRQWQLSQSGSLASCIIPAALLHGQRETLEPGERNFNRFGGWLGKNSTMGKNMRLLEDMHVHILASRESGSGRGTLRVEYLTLLLKRLTEPLRTLPKDEAVRNVVEFMNLYSISQDDFDTIVELSKFKGHANPLEGIQPAVKAALTKAYKEGSKMRMVRAADLVTLPGMKKAPKKRIQAILEPAEDGLGENGGGGAEMLVESEEENTSDTEGLENGGNAEKLQSELKSLNSKGVQVQLDLKGIGNSSTKKPAGRGRGGGLRGASEKKVGRGSGSTTKRKR 1003
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7507737 7518260 - Conep05aG0135100.1 Cone5ag1309 438327

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1309 1003 MobiDBLite consensus disorder prediction 352 380 - -
Cone5ag1309 1003 SMART AAA_5 434 572 IPR003593 GO:0016887(InterPro)
Cone5ag1309 1003 CDD HLD_clamp_RFC 571 629 IPR047854 -
Cone5ag1309 1003 FunFam Replication factor C subunit 1 643 752 - -
Cone5ag1309 1003 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 45 937 - GO:0003677(PANTHER)|GO:0005634(PANTHER)
Cone5ag1309 1003 SUPERFAMILY BRCT domain 233 314 IPR036420 -
Cone5ag1309 1003 SUPERFAMILY post-AAA+ oligomerization domain-like 642 787 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Cone5ag1309 1003 Gene3D - 571 641 - -
Cone5ag1309 1003 Pfam RCF1/5-like, AAA+ ATPase lid domain 578 619 - -
Cone5ag1309 1003 FunFam Replication factor C subunit 1 382 570 - -
Cone5ag1309 1003 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 382 631 IPR027417 -
Cone5ag1309 1003 ProSiteProfiles BRCT domain profile. 233 314 IPR001357 -
Cone5ag1309 1003 CDD AAA 433 534 - -
Cone5ag1309 1003 MobiDBLite consensus disorder prediction 217 232 - -
Cone5ag1309 1003 Pfam BRCA1 C Terminus (BRCT) domain 234 308 IPR001357 -
Cone5ag1309 1003 Pfam Replication factor RFC1 C terminal domain 711 873 IPR013725 GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro)
Cone5ag1309 1003 PIRSF RFC1 1 976 IPR012178 GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)
Cone5ag1309 1003 MobiDBLite consensus disorder prediction 944 967 - -
Cone5ag1309 1003 FunFam Replication factor C subunit 1 209 312 - -
Cone5ag1309 1003 MobiDBLite consensus disorder prediction 315 380 - -
Cone5ag1309 1003 MobiDBLite consensus disorder prediction 907 1003 - -
Cone5ag1309 1003 MobiDBLite consensus disorder prediction 1 238 - -
Cone5ag1309 1003 CDD BRCT_RFC1 233 311 - -
Cone5ag1309 1003 Gene3D - 643 752 - -
Cone5ag1309 1003 MobiDBLite consensus disorder prediction 34 108 - -
Cone5ag1309 1003 Pfam ATPase family associated with various cellular activities (AAA) 438 549 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone5ag1309 1003 FunFam Replication factor C subunit 1 571 642 - -
Cone5ag1309 1003 Gene3D BRCT domain 210 312 IPR036420 -
Cone5ag1309 1003 Gene3D - 382 570 IPR027417 -
Cone5ag1309 1003 MobiDBLite consensus disorder prediction 118 141 - -
Cone5ag1309 1003 SMART BRCT_7 235 313 IPR001357 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1309 K10754 - - mdm:103438855 1293.1
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone11ag1488 . 2 874 Core DNA Replication Machinery Family AT4G14700 59.5 3.9e-283 971.5
Cone11ag1488 . 1 874 Core DNA Replication Machinery Family AT4G12620 60.9 1.2e-292 1003.0
Cone19ag0109 . 2 357 Core DNA Replication Machinery Family AT2G37560 66.3 3.0e-136 482.3
Cone13ag0792 . 5 417 Core DNA Replication Machinery Family AT2G01120 63.3 9.1e-151 530.8
Cone14ag0366 . 1 535 Core DNA Replication Machinery Family AT4G29910 56.1 8.7e-165 577.8
Cone19ag0949 . 1 275 Core DNA Replication Machinery Family AT1G26840 64.7 6.9e-94 341.3
Cone14ag0637 . 1 946 Core DNA Replication Machinery Family AT1G44900 76.0 0.0e+00 1381.3
Cone9ag0904 . 1 578 Core DNA Replication Machinery Family AT5G46280 79.8 6.1e-267 917.1
Cone3ag1220 . 1 839 Core DNA Replication Machinery Family AT2G16440 70.4 0.0e+00 1122.8
Cone16ag0446 . 1 728 Core DNA Replication Machinery Family AT2G07690 75.5 1.4e-313 1072.4
Cone2ag0557 . 44 541 Core DNA Replication Machinery Family AT2G07690 63.4 4.1e-191 665.6
Cone5ag1384 . 7 783 Core DNA Replication Machinery Family AT5G44635 69.2 0.0e+00 1119.4
Cone20ag0983 . 5 719 Core DNA Replication Machinery Family AT4G02060 83.2 0.0e+00 1200.7
Cone5ag1091 . 31 492 Core DNA Replication Machinery Family AT2G29680 56.3 1.7e-143 506.9
Cone1ag0580 . 96 449 Core DNA Replication Machinery Family AT2G29680 59.6 1.1e-107 387.9
Cone5ag1091 . 32 453 Core DNA Replication Machinery Family AT1G07270 56.0 2.7e-127 453.0
Cone1ag0580 . 96 427 Core DNA Replication Machinery Family AT1G07270 61.4 3.5e-103 372.9
Cone7ag0082 . 1 593 Core DNA Replication Machinery Family AT3G25100 75.8 3.6e-254 874.8
Cone4ag0091 . 1 593 Core DNA Replication Machinery Family AT3G25100 75.5 1.5e-252 869.4
Cone19ag1277 . 20 800 Core DNA Replication Machinery Family AT3G09660 72.6 0.0e+00 1097.4
Cone8ag1012 . 1276 1913 Core DNA Replication Machinery Family AT2G14050 76.8 3.9e-286 981.1
Cone12ag0982 . 6 505 Core DNA Replication Machinery Family AT2G14050 59.2 1.7e-185 646.7
Cone16ag0785 . 5 334 Core DNA Replication Machinery Family AT2G20980 59.8 4.9e-106 382.1
Cone2ag0356 . 1 199 Core DNA Replication Machinery Family AT1G80190 70.8 3.8e-78 288.5
Cone10ag0951 . 1 145 Core DNA Replication Machinery Family AT3G12530 71.0 4.9e-59 224.6
Cone11ag1192 . 1 182 Core DNA Replication Machinery Family AT1G19080 69.8 1.8e-71 266.2
Cone11ag1192 . 1 182 Core DNA Replication Machinery Family AT3G55490 69.8 1.8e-71 266.2
Cone14ag0711 . 15 164 Core DNA Replication Machinery Family AT5G49010 64.7 4.5e-49 191.8
Cone11ag1102 . 1 1553 Core DNA Replication Machinery Family AT5G67100 60.8 0.0e+00 1779.6
Cone19ag1109 . 140 760 Core DNA Replication Machinery Family AT1G67630 61.1 1.4e-221 766.5
Cone13ag1130 . 4 313 Core DNA Replication Machinery Family AT1G67630 50.2 2.7e-79 293.9
Cone6ag0848 . 1 320 Core DNA Replication Machinery Family AT5G41880 65.0 4.2e-130 462.2
Cone9ag0846 . 1 231 Core DNA Replication Machinery Family AT5G41880 64.9 1.9e-90 330.5
Cone9ag1229 . 3 1010 Core DNA Replication Machinery Family AT5G63960 79.2 0.0e+00 1621.7
Cone13ag0534 . 4 439 Core DNA Replication Machinery Family AT2G42120 78.3 1.1e-207 719.9
Cone19ag0482 . 4 439 Core DNA Replication Machinery Family AT2G42120 76.7 2.1e-203 705.7
Cone1ag0529 . 1 2094 Core DNA Replication Machinery Family AT1G08260 69.8 0.0e+00 2929.0
Cone5ag1351 . 2 187 Core DNA Replication Machinery Family AT1G08260 57.5 4.5e-57 221.9
Cone5ag1350 . 1 151 Core DNA Replication Machinery Family AT1G08260 64.2 1.7e-48 193.4
Cone1ag0529 . 10 2211 Core DNA Replication Machinery Family AT2G27120 66.6 0.0e+00 2889.4
Cone5ag1351 . 2 187 Core DNA Replication Machinery Family AT2G27120 53.2 1.3e-48 193.7
Cone5ag1350 . 9 151 Core DNA Replication Machinery Family AT2G27120 66.4 7.3e-47 188.0
Cone19ag0415 . 7 459 Core DNA Replication Machinery Family AT5G22110 64.9 3.6e-175 612.1
Cone5ag1309 . 1 956 Core DNA Replication Machinery Family AT5G22010 63.0 1.9e-310 1062.4
Cone12ag0326 . 23 342 Core DNA Replication Machinery Family AT1G63160 92.8 6.2e-171 597.4
Cone8ag0325 . 20 205 Core DNA Replication Machinery Family AT1G63160 53.0 5.1e-80 295.4
Cone3ag0535 . 41 394 Core DNA Replication Machinery Family AT5G27740 85.9 5.1e-179 624.4
Cone4ag1422 . 1 334 Core DNA Replication Machinery Family AT1G21690 82.1 1.8e-154 542.7
Cone7ag1515 . 2 137 Core DNA Replication Machinery Family AT1G21690 70.1 2.4e-45 180.3
Cone17ag1292 . 1 364 Core DNA Replication Machinery Family AT1G77470 75.9 4.2e-152 535.0
Cone20ag0436 . 1 297 Core DNA Replication Machinery Family AT1G77470 61.2 6.6e-89 325.1
Cone7ag0036 . 24 617 Core DNA Replication Machinery Family AT2G06510 69.5 5.4e-253 870.9
Cone12ag0531 . 32 688 Core DNA Replication Machinery Family AT2G06510 53.7 3.6e-204 708.8
Cone8ag0528 . 32 695 Core DNA Replication Machinery Family AT2G06510 53.1 9.7e-202 700.7
Cone2ag0799 . 1 628 Core DNA Replication Machinery Family AT5G08020 67.7 9.4e-250 860.1
Cone16ag0210 . 1 628 Core DNA Replication Machinery Family AT5G08020 67.2 5.1e-248 854.4
Cone12ag0531 . 6 811 Core DNA Replication Machinery Family AT5G45400 50.2 1.3e-233 807.0
Cone2ag0799 . 1 622 Core DNA Replication Machinery Family AT5G61000 69.3 2.9e-254 875.2
Cone16ag0210 . 1 622 Core DNA Replication Machinery Family AT5G61000 69.6 3.2e-253 871.7
Cone12ag0531 . 6 798 Core DNA Replication Machinery Family AT4G19130 55.3 3.2e-234 808.9
Cone8ag0528 . 6 820 Core DNA Replication Machinery Family AT4G19130 54.2 6.1e-233 804.7
Cone5ag0109 . 1 361 Core DNA Replication Machinery Family AT5G26680 87.8 1.5e-182 636.3
Cone1ag1587 . 1 361 Core DNA Replication Machinery Family AT5G26680 87.8 3.7e-181 631.7
Cone7ag0441 . 2 1118 Core DNA Replication Machinery Family AT1G08840 52.8 1.4e-306 1049.7
Cone1ag1430 . 1 296 Core DNA Replication Machinery Family AT2G25100 67.8 7.6e-114 407.5
Cone1ag0493 . 170 805 Core DNA Replication Machinery Family AT1G08130 76.3 3.5e-289 991.5
Cone19ag1014 . 25 624 Core DNA Replication Machinery Family AT1G08130 63.9 3.2e-226 782.3
Cone6ag0127 . 127 494 Core DNA Replication Machinery Family AT1G08130 66.8 2.9e-134 476.9
Cone1ag0493 . 206 805 Core DNA Replication Machinery Family AT1G49250 67.8 2.9e-236 815.5
Cone19ag1014 . 65 624 Core DNA Replication Machinery Family AT1G49250 57.8 4.2e-187 652.1
Cone6ag0127 . 165 495 Core DNA Replication Machinery Family AT1G49250 61.1 4.0e-105 379.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009501 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33