Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone5ag1309 | ATGGCGGATATTAGGAAGTGGTTCATGAAGTCCCATGAAAAAGGCGGAACTACTTCAAACAATTCAGGGAAACTTGCGCCAGCTAAGCCACAACCTGAAAAACCAGTTCAAGGAGATCGAGAAAGTTCAGGTAGACGGAAAACTAGCAAGTATTTTGCTAAAGAACATCGGAAGCCCAAAGATGAAAAAGAAACAGAGGAACTTCCGGCCAAAAGAAAGACTTTAAAGGATAGTGAGGAATCACCAAAGAATCAACCTTCAAAAAAAATTCACAAAGTTAGGGATGATGATGACTTTGTTGATGTCACTCCTACAAAAAAGCTGAAAAGTGATTCAGGTAAAGGAATTTCACAGAAGTCTGTAGAAGTTGAAGAAAGCGAAGAAGATGAATACAAAGTTAAGGAATCCCCTCTTAAGTCTGTTGGAAGGGGTCGGGGTGGGAGAGGTTCATCAGTTGGGTCAGCTGGTGGAAGAGGTAGAGGAATAGGTCGAGAATCTGTAGAAGTTGAAGGAAGCAATGAAGAGGAAGATGGAGATAGTGAATTCCCTGCTAAGTCTGGTGGAAGGGGTCGGGGTGGAAGAGGTTCATCAGTGGCACCAGCTGGTGGAAGAGGTAGAGGAGGTGGACGAGGTGGTTTCATGAATTTCGGAGAGAGGAAAGATCCTCCACACAAAGGGGAAAAGGAAGCCCCTGAAGGTACTCCTGACTGTTTAGCTGGTCTAACTTTCGTGATTAGTGGAACACTTGACAGTTTGGAACGCGAAGAAGCGGAAGATTTGATTAAACGTCATGGTGGTCGTGTGACCGGATCTATTAGCAAGAAAACGAATTATCTTTTGTGTGATGAAGATATTGGTGGACGGAAATCCTCCAAAGCCAAAGAACTTGGGACTGCTTTTCTCACTGAGGATGGGTTATTTGATAAAATACGTGCATCAAAACATTCGAAAGCACCTGTACAGGGAGCGCACAAGCAGCCCCTGGGTAAGGCTGTTGAACCTGTACCAAACAAAACTGCCCAGAAAGTAGACAAAAAGAAAGATAGCATCAGCAGCACCTTGGATACCAGCGCTATCCGTAAAAATCCGACTTCTGGTGCTTCCCCTGCAAAGATCAAAAGTTGGACCACTGGACAGTCTTCAATGACTTGGACAGAAAAATATAGGCCAAAGGTTCCCAACGACATTGTTGGAAATCAATCCCTGGTCAAACAACTGCATGATTGGTTGGCACATTGGAGTGATAATTTTCTTGGTACTGGGAATAAGGAAAAGGGTAAGAAACAAAATGATTTTGACACCAAAAAAGCTGTCTTGTTAAGTGGAACACCTGGCATAGGGAAAACTACATCAGCGAAGTTGGTCAGTCAGATGCTCGGTTTCCAGGCAATAGAGGTAAATGCCAGTGATACTCGTGGTAAAGCTGATTTAAAGATTGAAAAAGGAATTGGTGGAAGCAATGCGAATTCCATTAAGGAACTTGTCAGTAACACTGCCCTAAGCATAAACATGGATAGGTCAAGCCATACAAAAACTGTGTTGATTATGGATGAAGTTGATGGGATGTCTGCAGGAGATAGGGGAGGAGTCACTGATCTGATTGCTAGCATCAAGATTTCCAAAATACCGATTATCTGCATCTGTAATGACCGCTACAGCCAGAAACTTAAAAGCCTTGTGAACTATTGTTTGCTTCTCAGTTTTAGAAAACCTACAAAGCAACAGATGGCAAAGAGATTAATGCAAATTGCAAATGCCGAAGGCCTTAAAGTTAATGAGATTGCTCTTGAGGAGCTTGCAGAAAGAGTTAATGGGGATTTGCGGATGGCGGTAAACTGTTTACAGTACATGAGCTTGTCAATGTCGGTGATTCAATATGATGACATCCGTCAGCGCCTTCTTTACAGTGCCAAGGATGAGGATATATCACCATTCACAGCTGTTGATAAGCTGTTTGGTTTCAGTGGAGGGAAGTTAAGGATGGATGAACGGATTGACCTAAGCATGAGTGATCCGGATCTAGTCCCTCTTCTTGTTCAGGAAAATTATCTAAATTATAGGCCAAGTTCAGTCGGTAAGGATGACAATGGGATCAAACGCATGGATGCAATTGCCCGTGCTTCTGAATCTATTGGTAATGGGGATATTATCAATGTACAGATTAGAAGATATAGGCAGTGGCAACTCTCTCAAAGCGGTTCACTTGCATCTTGCATAATTCCTGCTGCACTGTTGCATGGACAAAGGGAGACACTTGAACCGGGAGAAAGGAATTTCAATAGATTTGGTGGCTGGTTGGGAAAAAACTCAACCATGGGCAAGAACATGAGGCTTTTGGAGGACATGCATGTCCATATTCTTGCCTCTCGTGAATCTGGTTCGGGCAGAGGAACTCTGCGAGTTGAATACCTTACTCTTCTTTTGAAAAGGCTGACTGAGCCACTTCGTACACTACCCAAGGATGAAGCTGTTCGGAATGTCGTAGAGTTTATGAATTTGTACTCAATCAGTCAGGATGATTTTGATACAATCGTAGAGTTATCAAAATTTAAGGGCCATGCAAATCCTCTAGAAGGCATACAGCCTGCTGTTAAAGCAGCTCTGACAAAAGCATATAAAGAAGGAAGCAAAATGCGAATGGTAAGGGCTGCAGATCTAGTGACACTTCCAGGAATGAAGAAGGCCCCTAAGAAGCGGATTCAAGCAATTCTTGAGCCAGCTGAGGATGGATTGGGAGAAAATGGTGGTGGTGGTGCTGAAATGTTGGTTGAAAGCGAAGAAGAAAACACTTCAGATACGGAAGGCTTGGAAAACGGCGGCAATGCTGAGAAGCTGCAGTCAGAACTTAAAAGTTTGAATTCGAAAGGAGTGCAAGTGCAGTTGGACCTGAAGGGCATTGGAAATTCGAGCACCAAGAAACCAGCTGGCAGAGGAAGAGGAGGTGGTTTGAGGGGAGCTTCAGAGAAGAAAGTGGGTCGTGGTTCGGGCTCCACTACCAAGAGAAAGAGATGA | 3012 | 43.69 | MADIRKWFMKSHEKGGTTSNNSGKLAPAKPQPEKPVQGDRESSGRRKTSKYFAKEHRKPKDEKETEELPAKRKTLKDSEESPKNQPSKKIHKVRDDDDFVDVTPTKKLKSDSGKGISQKSVEVEESEEDEYKVKESPLKSVGRGRGGRGSSVGSAGGRGRGIGRESVEVEGSNEEEDGDSEFPAKSGGRGRGGRGSSVAPAGGRGRGGGRGGFMNFGERKDPPHKGEKEAPEGTPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSISKKTNYLLCDEDIGGRKSSKAKELGTAFLTEDGLFDKIRASKHSKAPVQGAHKQPLGKAVEPVPNKTAQKVDKKKDSISSTLDTSAIRKNPTSGASPAKIKSWTTGQSSMTWTEKYRPKVPNDIVGNQSLVKQLHDWLAHWSDNFLGTGNKEKGKKQNDFDTKKAVLLSGTPGIGKTTSAKLVSQMLGFQAIEVNASDTRGKADLKIEKGIGGSNANSIKELVSNTALSINMDRSSHTKTVLIMDEVDGMSAGDRGGVTDLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLMQIANAEGLKVNEIALEELAERVNGDLRMAVNCLQYMSLSMSVIQYDDIRQRLLYSAKDEDISPFTAVDKLFGFSGGKLRMDERIDLSMSDPDLVPLLVQENYLNYRPSSVGKDDNGIKRMDAIARASESIGNGDIINVQIRRYRQWQLSQSGSLASCIIPAALLHGQRETLEPGERNFNRFGGWLGKNSTMGKNMRLLEDMHVHILASRESGSGRGTLRVEYLTLLLKRLTEPLRTLPKDEAVRNVVEFMNLYSISQDDFDTIVELSKFKGHANPLEGIQPAVKAALTKAYKEGSKMRMVRAADLVTLPGMKKAPKKRIQAILEPAEDGLGENGGGGAEMLVESEEENTSDTEGLENGGNAEKLQSELKSLNSKGVQVQLDLKGIGNSSTKKPAGRGRGGGLRGASEKKVGRGSGSTTKRKR | 1003 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 7507737 | 7518260 | - | Conep05aG0135100.1 | Cone5ag1309 | 438327 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone5ag1309 | 1003 | MobiDBLite | consensus disorder prediction | 352 | 380 | - | - | |
| Cone5ag1309 | 1003 | SMART | AAA_5 | 434 | 572 | IPR003593 | GO:0016887(InterPro) | |
| Cone5ag1309 | 1003 | CDD | HLD_clamp_RFC | 571 | 629 | IPR047854 | - | |
| Cone5ag1309 | 1003 | FunFam | Replication factor C subunit 1 | 643 | 752 | - | - | |
| Cone5ag1309 | 1003 | PANTHER | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 | 45 | 937 | - | GO:0003677(PANTHER)|GO:0005634(PANTHER) | |
| Cone5ag1309 | 1003 | SUPERFAMILY | BRCT domain | 233 | 314 | IPR036420 | - | |
| Cone5ag1309 | 1003 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 642 | 787 | IPR008921 | GO:0003677(InterPro)|GO:0006260(InterPro) | |
| Cone5ag1309 | 1003 | Gene3D | - | 571 | 641 | - | - | |
| Cone5ag1309 | 1003 | Pfam | RCF1/5-like, AAA+ ATPase lid domain | 578 | 619 | - | - | |
| Cone5ag1309 | 1003 | FunFam | Replication factor C subunit 1 | 382 | 570 | - | - | |
| Cone5ag1309 | 1003 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 382 | 631 | IPR027417 | - | |
| Cone5ag1309 | 1003 | ProSiteProfiles | BRCT domain profile. | 233 | 314 | IPR001357 | - | |
| Cone5ag1309 | 1003 | CDD | AAA | 433 | 534 | - | - | |
| Cone5ag1309 | 1003 | MobiDBLite | consensus disorder prediction | 217 | 232 | - | - | |
| Cone5ag1309 | 1003 | Pfam | BRCA1 C Terminus (BRCT) domain | 234 | 308 | IPR001357 | - | |
| Cone5ag1309 | 1003 | Pfam | Replication factor RFC1 C terminal domain | 711 | 873 | IPR013725 | GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro) | |
| Cone5ag1309 | 1003 | PIRSF | RFC1 | 1 | 976 | IPR012178 | GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro) | |
| Cone5ag1309 | 1003 | MobiDBLite | consensus disorder prediction | 944 | 967 | - | - | |
| Cone5ag1309 | 1003 | FunFam | Replication factor C subunit 1 | 209 | 312 | - | - | |
| Cone5ag1309 | 1003 | MobiDBLite | consensus disorder prediction | 315 | 380 | - | - | |
| Cone5ag1309 | 1003 | MobiDBLite | consensus disorder prediction | 907 | 1003 | - | - | |
| Cone5ag1309 | 1003 | MobiDBLite | consensus disorder prediction | 1 | 238 | - | - | |
| Cone5ag1309 | 1003 | CDD | BRCT_RFC1 | 233 | 311 | - | - | |
| Cone5ag1309 | 1003 | Gene3D | - | 643 | 752 | - | - | |
| Cone5ag1309 | 1003 | MobiDBLite | consensus disorder prediction | 34 | 108 | - | - | |
| Cone5ag1309 | 1003 | Pfam | ATPase family associated with various cellular activities (AAA) | 438 | 549 | IPR003959 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cone5ag1309 | 1003 | FunFam | Replication factor C subunit 1 | 571 | 642 | - | - | |
| Cone5ag1309 | 1003 | Gene3D | BRCT domain | 210 | 312 | IPR036420 | - | |
| Cone5ag1309 | 1003 | Gene3D | - | 382 | 570 | IPR027417 | - | |
| Cone5ag1309 | 1003 | MobiDBLite | consensus disorder prediction | 118 | 141 | - | - | |
| Cone5ag1309 | 1003 | SMART | BRCT_7 | 235 | 313 | IPR001357 | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone5ag1309 | K10754 | - | mdm:103438855 | 1293.1 |