Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1324 ATGGAAATTTCCGCAGAGCAAGAGCACCCCAGGAAGGCGTTTGGATGGGCAGCTAGAGACCCATCTGGAATCCTCTCTCCCTTCAACTTCTCCAGAAGGGAAACGGGAGAGAAGGACGTGAGATTAAAAGTTGTATACTGTGGGATATGCCACTCGGATCTTCACATGGTCCAGAACGAGTGGGGAATGACTTCATACCCTGTTGTAGCTGGGCATGAAGTTACGGGTATAGTAGAAGAAGTAGGGAGCCAAGTAGAAAACTTCAAAGTTGGGGACAGAGTTGGAGTGGGATGTATGGTGGGATCTTGCCAATCATGTCAGAATTGTACCGACAGTTTGGAGAGCTACTGCCTTCAAATGATAAACACATTTAATGGTAAGTACCATGACGGAACCACCACATACGGCGGCTACTCGGACACCATGGTAGTTGATGAACATTTTCTCCTCCGCATACCGGACAGCCTCCCTCTTGACGCTGGTGCTCCTCTTTTGTGTGCTGGGATCACAGTTTACAGCCCGTTAAGGTATTATGGGCTCGATAAGCCTGGTTTGCATGTGGGCATTGTGGGGCTTGGTGGTTTAGGCCACGTGGCTGTCAAGTTTGCTAAGGCTTTTGGGGCTAAGGTTACTATTATCAGCACTTCTCCTAATAAGAAGCAAGAGGCTTTAGAGGTTCTTGGGGCCGACTCTTTTATTGTTAGCCGTGACCCAGACCAAATACAGGTAACTTTTAAATTATCTATATGTAAGACAACAACAAAAAAACAAAAAAAAAAAACAAAAAAAAAACAAAAAAAAAACAAAAAAACGAAAGAACATTTTTTTCCAAGTCTTTATTGGAATTATTTTTTAGATTCGGTCTGCTATTTCTTTCATTGA 882 43.54 MEISAEQEHPRKAFGWAARDPSGILSPFNFSRRETGEKDVRLKVVYCGICHSDLHMVQNEWGMTSYPVVAGHEVTGIVEEVGSQVENFKVGDRVGVGCMVGSCQSCQNCTDSLESYCLQMINTFNGKYHDGTTTYGGYSDTMVVDEHFLLRIPDSLPLDAGAPLLCAGITVYSPLRYYGLDKPGLHVGIVGLGGLGHVAVKFAKAFGAKVTIISTSPNKKQEALEVLGADSFIVSRDPDQIQVTFKLSICKTTTKKQKKKTKKKQKKNKKTKEHFFPSLYWNYFLDSVCYFFH 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7801793 7803835 + Conep05aG0136600.1 Cone5ag1324 438342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1324 293 FunFam Cinnamyl alcohol dehydrogenase 167 270 - -
Cone5ag1324 293 Pfam Alcohol dehydrogenase GroES-like domain 36 154 IPR013154 -
Cone5ag1324 293 CDD CAD1 14 242 IPR047109 GO:0016616(InterPro)
Cone5ag1324 293 Pfam Zinc-binding dehydrogenase 194 237 IPR013149 -
Cone5ag1324 293 SMART PKS_ER_names_mod 23 293 IPR020843 GO:0016491(InterPro)
Cone5ag1324 293 SUPERFAMILY GroES-like 19 184 IPR011032 -
Cone5ag1324 293 FunFam Uncharacterized protein 16 166 - -
Cone5ag1324 293 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
Cone5ag1324 293 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 242 IPR036291 -
Cone5ag1324 293 Gene3D - 16 166 - -
Cone5ag1324 293 PANTHER ALDEHYDE REDUCTASE 5 246 IPR047109 GO:0009809(PANTHER)|GO:0016616(InterPro)|GO:0016616(PANTHER)|GO:0045551(PANTHER)
Cone5ag1324 293 Gene3D - 167 244 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0126 Cone-Chr15:584909 Cone5ag1324 Cone-Chr5:7801793 9.84E-23 dispersed
Cone5ag1324 Cone-Chr5:7801793 Cone8ag0199 Cone-Chr8:1053508 1.01E-127 dispersed
Cone5ag1324 Cone-Chr5:7801793 Cone5ag1325 Cone-Chr5:7812425 6.25E-44 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1324 K23232 - rcu:8260964 371.703