Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1327 ATGTCCGCTTCTCGATCTGGAAATCTATCGCCTCAACCGCCTGAGCAGATCATGCAGCCTTTGAAGCGCCAGCTTCCTTTTTCTTCCATGAAACCACCGTTTTCTGCCGCTCCCGGTGATTATCACCGATTTTCCCCTGACCCTCGGTTAGTTTCCGATCAGGAAGCTGAGGTCATCGTAATGAAAACTCCGTTAAAGAGGAAGAATGATGGAGCAGATTATGAAGCCGAGTCCAGTGATAAAACTGGTCCCGGATTCACCGAAGTTGTTAACAGCTCCTTCCAGACACCTGTGTCAGTAAAAGGGGGAAAGGGAAACAAAGCAAGGCTTGCAAAATGTAATAAATCAGGACCTTATACTCCTGTTTCAAATGCAGGTTCACCTTCTCGAAACAATCTGACTCCAGCCAGTTCATGCCGATATGACAGCTCCCTGGGTCTCTTGACAAAAAAGTTTATTAATCTGATCAAACACGCTGAAGAGGGTATTCTTGATCTAAATAAAGCAGCCGACACTTTAGAGGTGCAAAAAAGACGAATATATGATATAACAAACGTACTTGAAGGAATTGGTCTCATAGAAAAGACGCTCAAAAACAGAATTCAGTGGAAGGGGCTTGATGTCTCAAGACCTGGGGATGCCGATGATAACTATGGTACTTTACAGGCAGATGTTGAAAACCTTACCATTCAGGAGCAAAGATTAGATGAACAAATAAGAGAAATGCAGGAAAGATTGAGGGACCTCAGTGAAGATGAAAACAATCAAAGATGGCTTTTTGTCACAGAGGAAGATATCAAGGGTTTGACTTGTTTCCAGAATGAGACACTAATCGCTATTAAAGCTCCACATGGCACAACTCTAGAGGTGCCAGATCCAGACGAGGCTGTTGATTATCCCCAAAGAAGGTATCGGATAGTCCTAAGAAGCACGATGGGTCCCATTGATGTTTTCCTAGTCAGTCAATTTGAAGAGAAGTTTGAGGAGTTGAACGGTGCAGAAGCAGCTCAAAGCTTACCATCAACCTCAGGATTCAATGACACCTCAACAACAACAATGGTGGCAGAGCAGGGTAGAGGGAAGGAGATAAAAATGCAAGAGCAAGATGTTCATAGAATTTGCTCAGACCTCAACGCCTCACAGGACTTTGTGGGCGGGATAATGAAGATTGTTCCCTCAGCCATTGATAGTGATGCAGATTACTGGCTTTTATCCGATGCTGATGTCAGCATCACTGATATGTGGAGAACGGAATCTGGAATTGAATGGAATGAGTTTAGCACACTGGAAGAAGATTACGCTTTGCCCATTGTGAGCACTCCAAGACCACAAACTCCTCCCCCCAATGCAGCTGAGCCACCATCTGCCACCCACCCTTCAGGCGGCTAA 1389 44.78 MSASRSGNLSPQPPEQIMQPLKRQLPFSSMKPPFSAAPGDYHRFSPDPRLVSDQEAEVIVMKTPLKRKNDGADYEAESSDKTGPGFTEVVNSSFQTPVSVKGGKGNKARLAKCNKSGPYTPVSNAGSPSRNNLTPASSCRYDSSLGLLTKKFINLIKHAEEGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKTLKNRIQWKGLDVSRPGDADDNYGTLQADVENLTIQEQRLDEQIREMQERLRDLSEDENNQRWLFVTEEDIKGLTCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVFLVSQFEEKFEELNGAEAAQSLPSTSGFNDTSTTTMVAEQGRGKEIKMQEQDVHRICSDLNASQDFVGGIMKIVPSAIDSDADYWLLSDADVSITDMWRTESGIEWNEFSTLEEDYALPIVSTPRPQTPPPNAAEPPSATHPSGG 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7825728 7830451 + Conep05aG0136900.1 Cone5ag1327 438345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1327 462 SUPERFAMILY Winged helix DNA-binding domain 140 203 IPR036390 -
Cone5ag1327 462 FunFam E2F transcription factor 1 134 207 - -
Cone5ag1327 462 Coils Coil 218 255 - -
Cone5ag1327 462 PANTHER TRANSCRIPTION FACTOR E2F 31 417 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Cone5ag1327 462 MobiDBLite consensus disorder prediction 117 131 - -
Cone5ag1327 462 Pfam E2F transcription factor CC-MB domain 221 321 IPR032198 GO:0046983(InterPro)
Cone5ag1327 462 SUPERFAMILY E2F-DP heterodimerization region 217 322 IPR037241 -
Cone5ag1327 462 CDD E2F_DD 221 322 IPR032198 GO:0046983(InterPro)
Cone5ag1327 462 MobiDBLite consensus disorder prediction 440 454 - -
Cone5ag1327 462 Pfam E2F/DP family winged-helix DNA-binding domain 142 205 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone5ag1327 462 MobiDBLite consensus disorder prediction 1 52 - -
Cone5ag1327 462 MobiDBLite consensus disorder prediction 1 17 - -
Cone5ag1327 462 SMART E2F_TDP_2 140 205 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone5ag1327 462 Gene3D - 134 207 IPR036388 -
Cone5ag1327 462 MobiDBLite consensus disorder prediction 84 100 - -
Cone5ag1327 462 MobiDBLite consensus disorder prediction 68 131 - -
Cone5ag1327 462 Gene3D - 213 322 - -
Cone5ag1327 462 MobiDBLite consensus disorder prediction 435 462 - -
Cone5ag1327 462 Coils Coil 156 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0116 Cone-Chr13:694206 Cone5ag1327 Cone-Chr5:7825728 7.70E-10 dispersed
Cone19ag0118 Cone-Chr19:663153 Cone5ag1327 Cone-Chr5:7825728 1.84E-09 dispersed
Cone2ag0880 Cone-Chr2:34706175 Cone5ag1327 Cone-Chr5:7825728 1.20E-09 dispersed
Cone1ag0555 Cone-Chr1:5528938 Cone5ag1327 Cone-Chr5:7825728 4.41E-305 wgd
Cone10ag0135 Cone-Chr10:701793 Cone5ag1327 Cone-Chr5:7825728 1.18E-175 wgd
Cone3ag0151 Cone-Chr3:841787 Cone5ag1327 Cone-Chr5:7825728 7.47E-176 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46199 PF16884 ADH_N_2 1.70E-22 CL0296 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1327 K06620 - csv:101219318 694.115