Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1347 ATGGCGAGCGATGGAGTTGGAGAAAGCACTAGTGAAACTTCTAATCACCTTCATCTTCCTAATTATTCTCTTTTTCATGAATTCAATCATAACCCTTCCCCCATTTTCTGTAATCAAGAAGGATCGTCGGTCTTTGCTTTTGGAGAGCTGGAACAAGCGATTGGGCTGCAAGTTAACGCCAGAACAAATTATTTAGGAGGGAGATCGTCTGCATCAACGTCTCTGAAAATGTCCCCTTCTTGGCCAATGAGATCTATCCACCAGACCCCAACAGTTAACCAGGAACATGTTAATTTTGAGGGGAGTTCAAAATCAGGAGAGGAAGAAAGCACAGAGGGGGCAAGATCAGCTGCCAACACGCTCACAAGCAGAGGTCATCATGATCATGGCGCCCACTTATTAGAACCGGATTCCCCAATGAGTAATAATAAAATAGCAGCTTCCTCTTCTTCAGATCATGATCATCATCAGGTGTTCGATCATAATCTTCATGGTCTAACGGTTGATATCGCGAGCGATGCTGACGTGTCGAGATTAGAATTTTCACCACATCAATCAGCTGCTGGACCATCACAACCGAAGAGGAGAGGAGCTGGTTCCGCAACAAAGAAACAAGTTGATGCCAAGACATTAAGACGTTTAGCTCAAAACAGAGAAGCTGCAAAAAAAAGCCGCCTCAGGAAAAAGGCTTACGTACAGCAACTAGAATCAAGTAGATCTAAGTTGTCTCAGCTCGAACAAGATCTTCAACGAGCCCGCTCCCAGGGACTGTTTTTGGGTGCTTTCGGTGCTGCGGCCGCAAATATTAGCTCCGGAGGAGCTATATTTGACATGGAGTATGCAAGGTGGCTAGAAGCCGAGCAACGACACATGGTGGAGCTCAGGTCAGCACTGCAAGCTTGTTTATCAGACGACGATCTTAGACAAATAATTGACAATTACGTTTCACATTACGACAAGATATTCCGGCTAAAATCCATTGTAGCAAAATCGGATGTGTTCCATCTGATTACCGGAATGTGGGTCACTCCGGCCGAACGCTGCTTCCTTTGGATGGCCGGTTTTAAGCCCTCCGATCTCATCAAGATGTTAATAACGCAATTAGACCCTCTAACAGAGCAACAAGTCATGGAAATATGCAAGCTCGAACGGTCAGTAGAACAAGCAGAAGAAGCTCTCTCACAAGGTCAAGACCAGCTCCAGCAATCTCTTATCGAGACCATTGCAGCTTCTCCTCCTATTATCATTGATGACATTAACCAGATGGCCATGGCCATGGCCATTAACAAGCTTTCTAATCTCGAAACCTTTGTTCACCAGGCTGATATATTGAGACAACAAACCCTTCATCAATTACGTCGCATATTGACGGTAAGACAAGCCACAAAATGTTTTCTTGTGATCGGTGAATACTACAACAGATTAAGAGCCCTGAGCACTTTGTGGACCTCTCGACCGGGAGAAGCCTTGATAAATCATGATCACAACTTGTGCCAACAAACAACCTCAGAGATACAAATGATTCATCAAAACTCACAGACTCACTTCTCAAACTTCTGA 1560 44.55 MASDGVGESTSETSNHLHLPNYSLFHEFNHNPSPIFCNQEGSSVFAFGELEQAIGLQVNARTNYLGGRSSASTSLKMSPSWPMRSIHQTPTVNQEHVNFEGSSKSGEEESTEGARSAANTLTSRGHHDHGAHLLEPDSPMSNNKIAASSSSDHDHHQVFDHNLHGLTVDIASDADVSRLEFSPHQSAAGPSQPKRRGAGSATKKQVDAKTLRRLAQNREAAKKSRLRKKAYVQQLESSRSKLSQLEQDLQRARSQGLFLGAFGAAAANISSGGAIFDMEYARWLEAEQRHMVELRSALQACLSDDDLRQIIDNYVSHYDKIFRLKSIVAKSDVFHLITGMWVTPAERCFLWMAGFKPSDLIKMLITQLDPLTEQQVMEICKLERSVEQAEEALSQGQDQLQQSLIETIAASPPIIIDDINQMAMAMAINKLSNLETFVHQADILRQQTLHQLRRILTVRQATKCFLVIGEYYNRLRALSTLWTSRPGEALINHDHNLCQQTTSEIQMIHQNSQTHFSNF 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8085681 8089068 + Conep05aG0138900.1 Cone5ag1347 438365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1347 519 FunFam BZIP family transcription factor 208 257 - -
Cone5ag1347 519 SUPERFAMILY Leucine zipper domain 209 251 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag1347 519 Gene3D - 208 257 - -
Cone5ag1347 519 Pfam bZIP transcription factor 208 250 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag1347 519 ProSiteProfiles DOG1 domain profile. 273 485 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cone5ag1347 519 MobiDBLite consensus disorder prediction 181 209 - -
Cone5ag1347 519 PANTHER TRANSCRIPTION FACTOR TGA9 129 488 - -
Cone5ag1347 519 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 207 251 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag1347 519 MobiDBLite consensus disorder prediction 89 157 - -
Cone5ag1347 519 Coils Coil 386 406 - -
Cone5ag1347 519 Coils Coil 228 255 - -
Cone5ag1347 519 SMART brlzneu 205 272 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag1347 519 Pfam Seed dormancy control 290 365 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cone5ag1347 519 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 212 227 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0986 Cone-Chr5:4227304 Cone5ag1347 Cone-Chr5:8085681 1.91E-99 dispersed
Cone5ag1347 Cone-Chr5:8085681 Cone8ag0792 Cone-Chr8:7958365 2.25E-82 dispersed
Cone1ag0533 Cone-Chr1:5313450 Cone5ag1347 Cone-Chr5:8085681 0 wgd
Cone11ag1384 Cone-Chr11:10034801 Cone5ag1347 Cone-Chr5:8085681 5.06E-119 wgd
Cone18ag0202 Cone-Chr18:998637 Cone5ag1347 Cone-Chr5:8085681 1.85E-151 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46201 PF14144 DOG1 2.40E-32 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1347 K14431 - mdm:103446591 489.189