Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone5ag1351 | ATGGTGGACTATGTTGGACATGTCAAGGATGCCAAGACAATTGTGCATAGAGCAGTAACTGAGCAAAGACGCGAACATCATGGCCCTACAATAGCTGTCATTGAGTGTCCCAATGCTCAGTTACTGAAGTCGGGTATACGAGCACTAGAAGATTTCCCCTGTGTGAACATCCCTTGCAATGCTCGTGATTGTCAGTATCAGGGCTTAATGGTGTGCTATACAGAGGCTCTTGGATGGCAACAAGTGGCAGCAAAAATTGGAATGCAACTGTGTGCTGCATCATCATCCCAGTGGTTGACTGAGAGAATTTCTCTAGCAAGATATGCCCATGTACCATTGGGAAATTTTGAAATTGACTGGCTTCTATTTACAGCCGATGTCTTCTATTCGAGAGAACTACGGTATCAGCAGCAGGTAATTTGGATATCAGATAATGGTGTTCCTGATCTAGGAGGCATTAGTGAAGAAGATACATGTTTTCTTGATGAGGTTCAACAACCTGTACTGACATACCCTGGAGCATACAGAAAAATTCCTGTGGAGCTTAAGGTTGAGACAATATTGTTCTATGTCTCCGTCTTATTTATTTACCTCTCCACCCTTTCCTTTTTCTTTTCTGACTGCATGCAAATAATTTAG | 639 | 42.41 | MVDYVGHVKDAKTIVHRAVTEQRREHHGPTIAVIECPNAQLLKSGIRALEDFPCVNIPCNARDCQYQGLMVCYTEALGWQQVAAKIGMQLCAASSSQWLTERISLARYAHVPLGNFEIDWLLFTADVFYSRELRYQQQVIWISDNGVPDLGGISEEDTCFLDEVQQPVLTYPGAYRKIPVELKVETILFYVSVLFIYLSTLSFFFSDCMQII | 212 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 8135253 | 8137017 | - | Conep05aG0139300.1 | Cone5ag1351 | 438369 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone5ag1351 | 212 | SMART | DUF1744_2 | 1 | 212 | IPR013697 | GO:0003887(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0008270(InterPro) | |
| Cone5ag1351 | 212 | PANTHER | DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A | 3 | 179 | IPR029703 | GO:0000278(PANTHER)|GO:0003677(PANTHER)|GO:0003677(InterPro)|GO:0003887(PANTHER)|GO:0003887(InterPro)|GO:0006260(InterPro)|GO:0006272(PANTHER)|GO:0006281(InterPro)|GO:0006287(PANTHER)|GO:0006297(PANTHER)|GO:0008310(PANTHER)|GO:0008622(PANTHER)|GO:0008622(InterPro)|GO:0045004(PANTHER) | |
| Cone5ag1351 | 212 | Pfam | Domain of unknown function (DUF1744) | 2 | 187 | IPR013697 | GO:0003887(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0008270(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone5ag1351 | Cone-Chr5:8135253 | Cone1ag0529 | Cone-Chr1:5232965 | 1.74E-101 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone5ag1351 | K02324 | - | vvi:100241432 | 276.944 |