Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1353 ATGGAGCCGTGGCTGGACGACTTAGCCGACGATCTTCAGAGCCTAAGTTTCACCTCTACAAACACCAACCGTAGCATCAGCTCCTGCTCCGATTCAACTCTAACGGCTTCATTCTCTTCTCAGCTCGGCTCACTCCCCAACAAACCCCACGCGCCGTCGTCAGACCCCTGCTGGTCCGCCATCAAACGGATCAAATGCGAATCCGATTCCTCGACGCGTCAACTCTCACTCTCCGACCTCAAATTCCTTCTCCGGTTGGGCTCCGGCGACATTGGCTCGGTCTACCTCGCGGAGTTGAAGTCCGCCGGAGAAGCAACCAACTCGATCGAGAGATGCGTTTTCGCGGCGAAGGTGATGGATAAGAAGGAGTTAGTTAGTCGGAGCAAAGAAGGACGGGCGAGAACGGAGAAGGAAATACTAGAATTGTTGGATCATCCGTTCTTGCCCACGCTCTACGCGAGTATCGACGCGTCGAAGTGGCTCTGCCTTCTGACGGAATTCTGTCCCGGCGGTGACTTGCACGTTCTCCGGCAACGTCGGCCGCTCAAACGCTTCGATGAAACTGCCGCGAGGTTCTATGCATCCGAGGTAGTTGTCGCCTTGGAGTATCTTCACATGATGGGTATAGTCTACCGTGATCTCAAACCCGAAAATGTTCTAGTTCGATCAGATGGCCACATCATGCTCACTGATTTTGATCTCTCCTTAAGATGCGAAGATTCTACATCAACCCCTCAAGTTATCATTACCAATCAAAACCTGCCAAATCATCACAACTTGGCCCTACAGAACAACAACAATAACTACTCCCTTGATCCCCGTCCCTTTTCATCTTACTCTTCTTGCATTATTCCCAACTGCATTGTCCCTGCTGTCTCATGTTTCCACCCAAAGAGGAAGCATAGGAAGAAGTCGGGTCTACGTAATGGGCCCGAGTTCATTGCGGAGCCCCTTGATGTCCGATCCATGTCATTCGTCGGGACCCATGAATACCTTGCCCCTGAGATCGTATCTGGTGAGGGCCATGGCAGTGCAGTCGACTGGTGGACCCTTGGAGTGTTTGTGTTTGAGATGTTTTATGGTGTGACGCCATTTCGAGGGATGGACAATGAACTAACTTTGGCTAACATTGTTGCTCGAGCCCTCGACTTTCCTAAAGAGCCGGCAGTTCCTGCCACAGCCAAGGACTTGATCTCCCAGTTACTAGTCAAGGATCCCGACCGACGACTGGGATCGGTTATGGGATCATCAACAATCAAGAACCATCCGTTTTTTAAAGGGGTCAATTGGGCATTGTTGAGATGTACAACCCCACCATTTATCCCACCACCATTTTCTAAAGATGATGTATCGCATGAAAGTAGTCCACAAACCCCAATTGAGTATTATTAA 1392 50.36 MEPWLDDLADDLQSLSFTSTNTNRSISSCSDSTLTASFSSQLGSLPNKPHAPSSDPCWSAIKRIKCESDSSTRQLSLSDLKFLLRLGSGDIGSVYLAELKSAGEATNSIERCVFAAKVMDKKELVSRSKEGRARTEKEILELLDHPFLPTLYASIDASKWLCLLTEFCPGGDLHVLRQRRPLKRFDETAARFYASEVVVALEYLHMMGIVYRDLKPENVLVRSDGHIMLTDFDLSLRCEDSTSTPQVIITNQNLPNHHNLALQNNNNNYSLDPRPFSSYSSCIIPNCIVPAVSCFHPKRKHRKKSGLRNGPEFIAEPLDVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGVFVFEMFYGVTPFRGMDNELTLANIVARALDFPKEPAVPATAKDLISQLLVKDPDRRLGSVMGSSTIKNHPFFKGVNWALLRCTTPPFIPPPFSKDDVSHESSPQTPIEYY 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8149607 8153139 - Conep05aG0139500.1 Cone5ag1353 438371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1353 463 FunFam serine/threonine-protein kinase D6PK-like 172 239 - -
Cone5ag1353 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag1353 463 SMART serkin_6 80 425 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1353 463 PANTHER FLIPPASE KINASE 1-RELATED 27 446 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cone5ag1353 463 ProSiteProfiles AGC-kinase C-terminal domain profile. 426 463 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1353 463 FunFam serine/threonine-protein kinase D6PK-like 320 443 - -
Cone5ag1353 463 Pfam Protein kinase domain 85 252 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1353 463 Pfam Protein kinase domain 322 425 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1353 463 SUPERFAMILY Protein kinase-like (PK-like) 68 454 IPR011009 -
Cone5ag1353 463 Gene3D Phosphorylase Kinase; domain 1 78 171 - -
Cone5ag1353 463 ProSiteProfiles Protein kinase domain profile. 80 425 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1353 463 Gene3D Transferase(Phosphotransferase) domain 1 321 443 - -
Cone5ag1353 463 MobiDBLite consensus disorder prediction 444 463 - -
Cone5ag1353 463 Gene3D Transferase(Phosphotransferase) domain 1 172 243 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag1353 Cone-Chr5:8149607 Cone5ag1793 Cone-Chr5:12725115 7.89E-134 dispersed
Cone1ag0527 Cone-Chr1:5199629 Cone5ag1353 Cone-Chr5:8149607 2.51e-318 wgd
Cone10ag0177 Cone-Chr10:861393 Cone5ag1353 Cone-Chr5:8149607 2.46E-131 wgd
Cone11ag1361 Cone-Chr11:9912074 Cone5ag1353 Cone-Chr5:8149607 4.12E-127 wgd
Cone13ag1200 Cone-Chr13:9287179 Cone5ag1353 Cone-Chr5:8149607 5.03E-131 wgd
Cone18ag0217 Cone-Chr18:1076442 Cone5ag1353 Cone-Chr5:8149607 4.80E-129 wgd
Cone19ag1184 Cone-Chr19:8299360 Cone5ag1353 Cone-Chr5:8149607 6.13E-130 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82879 PF05664 UNC_13_homolog 3.80E-235 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1353 K08286 - csv:101207262 691.034