Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone5ag1384 | ATGGAGGGCTACGGCGGCGGAGGTTACTTCGTTGATGAGAAAGCAGTCTATGTCGAGAACATTTTCCTCGAATTCCTAAAGAATTTCCGTTTGGGCGGTGAACCGTATTACGAGGCGGAGATGGAAGCGATGATATCCAGTGAATCCAACACTATGTTCATTGATTTCACTCATCTCATGAGGTTCAAAGATCTCCTTTATGCCGCCATTTCTGATGAGTACTTGAGGTTTGAGCCGTACCTGAAGAACGCCTGCATGCGCTTTGTCAAGGACCTCAGACCCACTCTCACTACCGACGACAACTCTAACAAGGACATCAATCTCGCTTTCTTCAACCTCCCTCTGTCTAAAAGGCTCAGGGAACTGACTACTGCTGAGATCGGTAAACTTGTTTCAGTCACTGGAGTTGTCACTCGTACCAGTGAGGTTCGACCGGAGCTTCTTCAGGGAACTTTTAAGTGTTTACAGTGTCCAGCAGTTGTCAAGAATGTTGACCAGCAATTTAAATATACCGAGCCAACAATATGCATTAGTCCAACCTGTCAGAATAAGACAAACTGGGCATTACTTAGGGAAGAAAGCAAGTTTACAGATTGGCAGAGAGTGAGGATGCAAGAGACTTCCAAGGAGATTCCAGCAGGCTCCCTTCCTAGATCTTTGGATGTTATTCTCCGCCATGAGATGGTTGAACGCGCAAGGGCGGGAGATACGGTGACTTTTACTGGCACGGTGGTTGTGGTACCAGATATTATGGCATTGGCATCACCGGGAGAAAGAGCAGAATGCCGACGAGAAGGCTCTCAGAGAAAGAGCTCTACAGTTGGGCAAGAAGGAGTCCGTGGCCTCCGATCATTGGGAGTGAGAGATCTGTCTTATCGCCTGGCCTTTATTGCTAATTCTGTTCAGGTTTGTGATGGAAGAAGGGATATGGATATCCGAAATAGGAAAAAGGACATGGATGAAGAATACCAGCAATTTACTGCAAAGGAGCTTGATGATGTCCAGAAGATGAGGAATACACCTGATTTCTTCAACAAGCTTGTTGATAGCATTGCTCCAAATGTCTTTGGTCACCAAGATATCAAGCGAGCAATCTTGCTTATGCTTCTTGGGGGTGTCCACAAGTTTACTCATGAAGGCATCAACCTTAGAGGAGACATTAATGTTTGTATAGTTGGAGATCCCAGCTGTGCGAAGTCTCAATTCCTGAAGTATGCTGCGGGATTGGTTCCAAGATCTGTTTACACATCTGGAAAATCCTCGTCTGCTGCAGGGTTGACTGCAACGGTTGCCAAAGAACAAGAAACGGGGGAATTTTGTATTGAGGCTGGTGCTCTAATGCTTGCTGACAATGGCATTTGTTGCATCGATGAATTTGACAAGATGGACATAAGGGATCAGGTTGCAATTCATGAAGCAATGGAACAACAGACAATAAGCATTACAAAAGCAGGAATACAAGCAACACTAAATGCACGGGCATCGATTCTTGCTGCTGCTAATCCCACTGGAGGGCGCTATGACAAGTCTAAACCACTGAAGTATAACGTGGCTCTTCCTCCTGCGATTCTTTCAAGGTTTGACCTCTTATATGTTATGATTGATGATCCGGATGATGAAACTGATTATTACATTGCCCAACACATTGTTCGAGTGCATCAGAAGCATGAACAAGCACTATCTCCTGCCTTCTCTACTACAGAGCTGAAGCATTATATTGCTTATGCAAAAACTCTAAAACCAAAGCTAAGCTCAAATGCCAGAAAAGCATTGGTGGATTCATACGTTGCTTTGCGTAGGGGTGATACATCTCCTGGCAGTAGAGTTGCGTACCGCATGACTGTCAGGCAGCTTGAGGCATTGGTCAGGCTGTCAGAAGCCATTACTCGATGTTACTTAGAAACTCAGGTGCAACGACGTCATGTTCTTTTAGCAGAGAAACTACTGAAAACATCGATAATCAGTGTGGAGTCAACTAGGATTGATATATCCGAGTTTGAAGAAGAAAAGAAGAAACTTGTGATAAGTGATAGAGACTTTCAAAGGATTACTGAAGCCCTCGTCATGCGCCTTAGAAAACATGAAGAAACTGTAATGCCAGGAACGGACCTACCTGGAATGAGGCAGAGAGATTTGATTAGATGGTATGTGGATCAGCAGAATGAGAAAAATAATTACAGCTCTGTGGAGGAGGCAGCAAATGATATTCCCATGATCAAAGCTATCATAGAGAGTCTGGTTCAAAGGGAAGGCATTTTGATTGTGGTAGATGATGGTAGGCAAGGAGAAGGTGAAGTTGCAAGCAGAAATGACAGAATTTTAATGGTTTCTCCAAATTATGTCATGGAGGGTGATGGGGTAATGTGA | 2367 | 44.32 | MEGYGGGGYFVDEKAVYVENIFLEFLKNFRLGGEPYYEAEMEAMISSESNTMFIDFTHLMRFKDLLYAAISDEYLRFEPYLKNACMRFVKDLRPTLTTDDNSNKDINLAFFNLPLSKRLRELTTAEIGKLVSVTGVVTRTSEVRPELLQGTFKCLQCPAVVKNVDQQFKYTEPTICISPTCQNKTNWALLREESKFTDWQRVRMQETSKEIPAGSLPRSLDVILRHEMVERARAGDTVTFTGTVVVVPDIMALASPGERAECRREGSQRKSSTVGQEGVRGLRSLGVRDLSYRLAFIANSVQVCDGRRDMDIRNRKKDMDEEYQQFTAKELDDVQKMRNTPDFFNKLVDSIAPNVFGHQDIKRAILLMLLGGVHKFTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGLVPRSVYTSGKSSSAAGLTATVAKEQETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARASILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLLYVMIDDPDDETDYYIAQHIVRVHQKHEQALSPAFSTTELKHYIAYAKTLKPKLSSNARKALVDSYVALRRGDTSPGSRVAYRMTVRQLEALVRLSEAITRCYLETQVQRRHVLLAEKLLKTSIISVESTRIDISEFEEEKKKLVISDRDFQRITEALVMRLRKHEETVMPGTDLPGMRQRDLIRWYVDQQNEKNNYSSVEEAANDIPMIKAIIESLVQREGILIVVDDGRQGEGEVASRNDRILMVSPNYVMEGDGVM | 788 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 8503744 | 8508740 | + | Conep05aG0142800.1 | Cone5ag1384 | 438402 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone5ag1384 | 788 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 472 | 485 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone5ag1384 | 788 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 523 | 531 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone5ag1384 | 788 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 384 | 399 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone5ag1384 | 788 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 496 | 508 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone5ag1384 | 788 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 444 | 458 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone5ag1384 | 788 | ProSiteProfiles | MCM family domain profile. | 343 | 549 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone5ag1384 | 788 | ProSitePatterns | MCM family signature. | 452 | 460 | IPR018525 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro) | |
| Cone5ag1384 | 788 | Gene3D | - | 146 | 197 | - | - | |
| Cone5ag1384 | 788 | Pfam | MCM OB domain | 119 | 247 | IPR033762 | - | |
| Cone5ag1384 | 788 | Pfam | MCM AAA-lid domain | 568 | 653 | IPR041562 | - | |
| Cone5ag1384 | 788 | Gene3D | - | 673 | 784 | - | - | |
| Cone5ag1384 | 788 | SMART | mcm | 115 | 654 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone5ag1384 | 788 | SUPERFAMILY | Nucleic acid-binding proteins | 21 | 249 | IPR012340 | - | |
| Cone5ag1384 | 788 | Gene3D | - | 10 | 115 | - | - | |
| Cone5ag1384 | 788 | Gene3D | - | 119 | 247 | IPR012340 | - | |
| Cone5ag1384 | 788 | Pfam | MCM P-loop domain | 331 | 553 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone5ag1384 | 788 | Pfam | MCM6 C-terminal winged-helix domain | 671 | 782 | IPR041024 | - | |
| Cone5ag1384 | 788 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 15 | 720 | IPR031327 | GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:1902969(PANTHER)|GO:1990518(PANTHER) | |
| Cone5ag1384 | 788 | Pfam | MCM N-terminal domain | 20 | 112 | IPR027925 | - | |
| Cone5ag1384 | 788 | CDD | MCM6 | 346 | 652 | - | - | |
| Cone5ag1384 | 788 | FunFam | DNA helicase | 328 | 658 | - | - | |
| Cone5ag1384 | 788 | FunFam | DNA helicase | 146 | 197 | - | - | |
| Cone5ag1384 | 788 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 219 | 230 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cone5ag1384 | 788 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 116 | 128 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cone5ag1384 | 788 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 74 | 86 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cone5ag1384 | 788 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 166 | 183 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cone5ag1384 | 788 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 278 | 299 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cone5ag1384 | 788 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 353 | 654 | IPR027417 | - | |
| Cone5ag1384 | 788 | Gene3D | - | 323 | 672 | IPR027417 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone3ag1220 | Cone-Chr3:30947681 | Cone5ag1384 | Cone-Chr5:8503744 | 2.72E-108 | dispersed | |
| Cone5ag1384 | Cone-Chr5:8503744 | Cone9ag0904 | Cone-Chr9:4438074 | 1.30E-91 | dispersed | |
| Cone5ag1384 | Cone-Chr5:8503744 | Cone16ag0446 | Cone-Chr16:6781760 | 7.08E-86 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone5ag1384 | K02542 | - | vvi:100260804 | 1221.84 |