Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1384 ATGGAGGGCTACGGCGGCGGAGGTTACTTCGTTGATGAGAAAGCAGTCTATGTCGAGAACATTTTCCTCGAATTCCTAAAGAATTTCCGTTTGGGCGGTGAACCGTATTACGAGGCGGAGATGGAAGCGATGATATCCAGTGAATCCAACACTATGTTCATTGATTTCACTCATCTCATGAGGTTCAAAGATCTCCTTTATGCCGCCATTTCTGATGAGTACTTGAGGTTTGAGCCGTACCTGAAGAACGCCTGCATGCGCTTTGTCAAGGACCTCAGACCCACTCTCACTACCGACGACAACTCTAACAAGGACATCAATCTCGCTTTCTTCAACCTCCCTCTGTCTAAAAGGCTCAGGGAACTGACTACTGCTGAGATCGGTAAACTTGTTTCAGTCACTGGAGTTGTCACTCGTACCAGTGAGGTTCGACCGGAGCTTCTTCAGGGAACTTTTAAGTGTTTACAGTGTCCAGCAGTTGTCAAGAATGTTGACCAGCAATTTAAATATACCGAGCCAACAATATGCATTAGTCCAACCTGTCAGAATAAGACAAACTGGGCATTACTTAGGGAAGAAAGCAAGTTTACAGATTGGCAGAGAGTGAGGATGCAAGAGACTTCCAAGGAGATTCCAGCAGGCTCCCTTCCTAGATCTTTGGATGTTATTCTCCGCCATGAGATGGTTGAACGCGCAAGGGCGGGAGATACGGTGACTTTTACTGGCACGGTGGTTGTGGTACCAGATATTATGGCATTGGCATCACCGGGAGAAAGAGCAGAATGCCGACGAGAAGGCTCTCAGAGAAAGAGCTCTACAGTTGGGCAAGAAGGAGTCCGTGGCCTCCGATCATTGGGAGTGAGAGATCTGTCTTATCGCCTGGCCTTTATTGCTAATTCTGTTCAGGTTTGTGATGGAAGAAGGGATATGGATATCCGAAATAGGAAAAAGGACATGGATGAAGAATACCAGCAATTTACTGCAAAGGAGCTTGATGATGTCCAGAAGATGAGGAATACACCTGATTTCTTCAACAAGCTTGTTGATAGCATTGCTCCAAATGTCTTTGGTCACCAAGATATCAAGCGAGCAATCTTGCTTATGCTTCTTGGGGGTGTCCACAAGTTTACTCATGAAGGCATCAACCTTAGAGGAGACATTAATGTTTGTATAGTTGGAGATCCCAGCTGTGCGAAGTCTCAATTCCTGAAGTATGCTGCGGGATTGGTTCCAAGATCTGTTTACACATCTGGAAAATCCTCGTCTGCTGCAGGGTTGACTGCAACGGTTGCCAAAGAACAAGAAACGGGGGAATTTTGTATTGAGGCTGGTGCTCTAATGCTTGCTGACAATGGCATTTGTTGCATCGATGAATTTGACAAGATGGACATAAGGGATCAGGTTGCAATTCATGAAGCAATGGAACAACAGACAATAAGCATTACAAAAGCAGGAATACAAGCAACACTAAATGCACGGGCATCGATTCTTGCTGCTGCTAATCCCACTGGAGGGCGCTATGACAAGTCTAAACCACTGAAGTATAACGTGGCTCTTCCTCCTGCGATTCTTTCAAGGTTTGACCTCTTATATGTTATGATTGATGATCCGGATGATGAAACTGATTATTACATTGCCCAACACATTGTTCGAGTGCATCAGAAGCATGAACAAGCACTATCTCCTGCCTTCTCTACTACAGAGCTGAAGCATTATATTGCTTATGCAAAAACTCTAAAACCAAAGCTAAGCTCAAATGCCAGAAAAGCATTGGTGGATTCATACGTTGCTTTGCGTAGGGGTGATACATCTCCTGGCAGTAGAGTTGCGTACCGCATGACTGTCAGGCAGCTTGAGGCATTGGTCAGGCTGTCAGAAGCCATTACTCGATGTTACTTAGAAACTCAGGTGCAACGACGTCATGTTCTTTTAGCAGAGAAACTACTGAAAACATCGATAATCAGTGTGGAGTCAACTAGGATTGATATATCCGAGTTTGAAGAAGAAAAGAAGAAACTTGTGATAAGTGATAGAGACTTTCAAAGGATTACTGAAGCCCTCGTCATGCGCCTTAGAAAACATGAAGAAACTGTAATGCCAGGAACGGACCTACCTGGAATGAGGCAGAGAGATTTGATTAGATGGTATGTGGATCAGCAGAATGAGAAAAATAATTACAGCTCTGTGGAGGAGGCAGCAAATGATATTCCCATGATCAAAGCTATCATAGAGAGTCTGGTTCAAAGGGAAGGCATTTTGATTGTGGTAGATGATGGTAGGCAAGGAGAAGGTGAAGTTGCAAGCAGAAATGACAGAATTTTAATGGTTTCTCCAAATTATGTCATGGAGGGTGATGGGGTAATGTGA 2367 44.32 MEGYGGGGYFVDEKAVYVENIFLEFLKNFRLGGEPYYEAEMEAMISSESNTMFIDFTHLMRFKDLLYAAISDEYLRFEPYLKNACMRFVKDLRPTLTTDDNSNKDINLAFFNLPLSKRLRELTTAEIGKLVSVTGVVTRTSEVRPELLQGTFKCLQCPAVVKNVDQQFKYTEPTICISPTCQNKTNWALLREESKFTDWQRVRMQETSKEIPAGSLPRSLDVILRHEMVERARAGDTVTFTGTVVVVPDIMALASPGERAECRREGSQRKSSTVGQEGVRGLRSLGVRDLSYRLAFIANSVQVCDGRRDMDIRNRKKDMDEEYQQFTAKELDDVQKMRNTPDFFNKLVDSIAPNVFGHQDIKRAILLMLLGGVHKFTHEGINLRGDINVCIVGDPSCAKSQFLKYAAGLVPRSVYTSGKSSSAAGLTATVAKEQETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARASILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLLYVMIDDPDDETDYYIAQHIVRVHQKHEQALSPAFSTTELKHYIAYAKTLKPKLSSNARKALVDSYVALRRGDTSPGSRVAYRMTVRQLEALVRLSEAITRCYLETQVQRRHVLLAEKLLKTSIISVESTRIDISEFEEEKKKLVISDRDFQRITEALVMRLRKHEETVMPGTDLPGMRQRDLIRWYVDQQNEKNNYSSVEEAANDIPMIKAIIESLVQREGILIVVDDGRQGEGEVASRNDRILMVSPNYVMEGDGVM 788
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8503744 8508740 + Conep05aG0142800.1 Cone5ag1384 438402

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1384 788 PRINTS Mini-chromosome maintenance (MCM) protein family signature 472 485 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone5ag1384 788 PRINTS Mini-chromosome maintenance (MCM) protein family signature 523 531 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone5ag1384 788 PRINTS Mini-chromosome maintenance (MCM) protein family signature 384 399 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone5ag1384 788 PRINTS Mini-chromosome maintenance (MCM) protein family signature 496 508 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone5ag1384 788 PRINTS Mini-chromosome maintenance (MCM) protein family signature 444 458 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone5ag1384 788 ProSiteProfiles MCM family domain profile. 343 549 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone5ag1384 788 ProSitePatterns MCM family signature. 452 460 IPR018525 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro)
Cone5ag1384 788 Gene3D - 146 197 - -
Cone5ag1384 788 Pfam MCM OB domain 119 247 IPR033762 -
Cone5ag1384 788 Pfam MCM AAA-lid domain 568 653 IPR041562 -
Cone5ag1384 788 Gene3D - 673 784 - -
Cone5ag1384 788 SMART mcm 115 654 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone5ag1384 788 SUPERFAMILY Nucleic acid-binding proteins 21 249 IPR012340 -
Cone5ag1384 788 Gene3D - 10 115 - -
Cone5ag1384 788 Gene3D - 119 247 IPR012340 -
Cone5ag1384 788 Pfam MCM P-loop domain 331 553 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone5ag1384 788 Pfam MCM6 C-terminal winged-helix domain 671 782 IPR041024 -
Cone5ag1384 788 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 15 720 IPR031327 GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:1902969(PANTHER)|GO:1990518(PANTHER)
Cone5ag1384 788 Pfam MCM N-terminal domain 20 112 IPR027925 -
Cone5ag1384 788 CDD MCM6 346 652 - -
Cone5ag1384 788 FunFam DNA helicase 328 658 - -
Cone5ag1384 788 FunFam DNA helicase 146 197 - -
Cone5ag1384 788 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 219 230 IPR008049 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Cone5ag1384 788 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 116 128 IPR008049 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Cone5ag1384 788 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 74 86 IPR008049 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Cone5ag1384 788 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 166 183 IPR008049 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Cone5ag1384 788 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 278 299 IPR008049 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Cone5ag1384 788 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 654 IPR027417 -
Cone5ag1384 788 Gene3D - 323 672 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1384 K02542 - - vvi:100260804 1221.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1220 Cone-Chr3:30947681 Cone5ag1384 Cone-Chr5:8503744 2.72E-108 dispersed
Cone5ag1384 Cone-Chr5:8503744 Cone9ag0904 Cone-Chr9:4438074 1.30E-91 dispersed
Cone5ag1384 Cone-Chr5:8503744 Cone16ag0446 Cone-Chr16:6781760 7.08E-86 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone11ag1488 . 2 874 Core DNA Replication Machinery Family AT4G14700 59.5 3.9e-283 971.5
Cone11ag1488 . 1 874 Core DNA Replication Machinery Family AT4G12620 60.9 1.2e-292 1003.0
Cone19ag0109 . 2 357 Core DNA Replication Machinery Family AT2G37560 66.3 3.0e-136 482.3
Cone13ag0792 . 5 417 Core DNA Replication Machinery Family AT2G01120 63.3 9.1e-151 530.8
Cone14ag0366 . 1 535 Core DNA Replication Machinery Family AT4G29910 56.1 8.7e-165 577.8
Cone19ag0949 . 1 275 Core DNA Replication Machinery Family AT1G26840 64.7 6.9e-94 341.3
Cone14ag0637 . 1 946 Core DNA Replication Machinery Family AT1G44900 76.0 0.0e+00 1381.3
Cone9ag0904 . 1 578 Core DNA Replication Machinery Family AT5G46280 79.8 6.1e-267 917.1
Cone3ag1220 . 1 839 Core DNA Replication Machinery Family AT2G16440 70.4 0.0e+00 1122.8
Cone16ag0446 . 1 728 Core DNA Replication Machinery Family AT2G07690 75.5 1.4e-313 1072.4
Cone2ag0557 . 44 541 Core DNA Replication Machinery Family AT2G07690 63.4 4.1e-191 665.6
Cone5ag1384 . 7 783 Core DNA Replication Machinery Family AT5G44635 69.2 0.0e+00 1119.4
Cone20ag0983 . 5 719 Core DNA Replication Machinery Family AT4G02060 83.2 0.0e+00 1200.7
Cone5ag1091 . 31 492 Core DNA Replication Machinery Family AT2G29680 56.3 1.7e-143 506.9
Cone1ag0580 . 96 449 Core DNA Replication Machinery Family AT2G29680 59.6 1.1e-107 387.9
Cone5ag1091 . 32 453 Core DNA Replication Machinery Family AT1G07270 56.0 2.7e-127 453.0
Cone1ag0580 . 96 427 Core DNA Replication Machinery Family AT1G07270 61.4 3.5e-103 372.9
Cone7ag0082 . 1 593 Core DNA Replication Machinery Family AT3G25100 75.8 3.6e-254 874.8
Cone4ag0091 . 1 593 Core DNA Replication Machinery Family AT3G25100 75.5 1.5e-252 869.4
Cone19ag1277 . 20 800 Core DNA Replication Machinery Family AT3G09660 72.6 0.0e+00 1097.4
Cone8ag1012 . 1276 1913 Core DNA Replication Machinery Family AT2G14050 76.8 3.9e-286 981.1
Cone12ag0982 . 6 505 Core DNA Replication Machinery Family AT2G14050 59.2 1.7e-185 646.7
Cone16ag0785 . 5 334 Core DNA Replication Machinery Family AT2G20980 59.8 4.9e-106 382.1
Cone2ag0356 . 1 199 Core DNA Replication Machinery Family AT1G80190 70.8 3.8e-78 288.5
Cone10ag0951 . 1 145 Core DNA Replication Machinery Family AT3G12530 71.0 4.9e-59 224.6
Cone11ag1192 . 1 182 Core DNA Replication Machinery Family AT1G19080 69.8 1.8e-71 266.2
Cone11ag1192 . 1 182 Core DNA Replication Machinery Family AT3G55490 69.8 1.8e-71 266.2
Cone14ag0711 . 15 164 Core DNA Replication Machinery Family AT5G49010 64.7 4.5e-49 191.8
Cone11ag1102 . 1 1553 Core DNA Replication Machinery Family AT5G67100 60.8 0.0e+00 1779.6
Cone19ag1109 . 140 760 Core DNA Replication Machinery Family AT1G67630 61.1 1.4e-221 766.5
Cone13ag1130 . 4 313 Core DNA Replication Machinery Family AT1G67630 50.2 2.7e-79 293.9
Cone6ag0848 . 1 320 Core DNA Replication Machinery Family AT5G41880 65.0 4.2e-130 462.2
Cone9ag0846 . 1 231 Core DNA Replication Machinery Family AT5G41880 64.9 1.9e-90 330.5
Cone9ag1229 . 3 1010 Core DNA Replication Machinery Family AT5G63960 79.2 0.0e+00 1621.7
Cone13ag0534 . 4 439 Core DNA Replication Machinery Family AT2G42120 78.3 1.1e-207 719.9
Cone19ag0482 . 4 439 Core DNA Replication Machinery Family AT2G42120 76.7 2.1e-203 705.7
Cone1ag0529 . 1 2094 Core DNA Replication Machinery Family AT1G08260 69.8 0.0e+00 2929.0
Cone5ag1351 . 2 187 Core DNA Replication Machinery Family AT1G08260 57.5 4.5e-57 221.9
Cone5ag1350 . 1 151 Core DNA Replication Machinery Family AT1G08260 64.2 1.7e-48 193.4
Cone1ag0529 . 10 2211 Core DNA Replication Machinery Family AT2G27120 66.6 0.0e+00 2889.4
Cone5ag1351 . 2 187 Core DNA Replication Machinery Family AT2G27120 53.2 1.3e-48 193.7
Cone5ag1350 . 9 151 Core DNA Replication Machinery Family AT2G27120 66.4 7.3e-47 188.0
Cone19ag0415 . 7 459 Core DNA Replication Machinery Family AT5G22110 64.9 3.6e-175 612.1
Cone5ag1309 . 1 956 Core DNA Replication Machinery Family AT5G22010 63.0 1.9e-310 1062.4
Cone12ag0326 . 23 342 Core DNA Replication Machinery Family AT1G63160 92.8 6.2e-171 597.4
Cone8ag0325 . 20 205 Core DNA Replication Machinery Family AT1G63160 53.0 5.1e-80 295.4
Cone3ag0535 . 41 394 Core DNA Replication Machinery Family AT5G27740 85.9 5.1e-179 624.4
Cone4ag1422 . 1 334 Core DNA Replication Machinery Family AT1G21690 82.1 1.8e-154 542.7
Cone7ag1515 . 2 137 Core DNA Replication Machinery Family AT1G21690 70.1 2.4e-45 180.3
Cone17ag1292 . 1 364 Core DNA Replication Machinery Family AT1G77470 75.9 4.2e-152 535.0
Cone20ag0436 . 1 297 Core DNA Replication Machinery Family AT1G77470 61.2 6.6e-89 325.1
Cone7ag0036 . 24 617 Core DNA Replication Machinery Family AT2G06510 69.5 5.4e-253 870.9
Cone12ag0531 . 32 688 Core DNA Replication Machinery Family AT2G06510 53.7 3.6e-204 708.8
Cone8ag0528 . 32 695 Core DNA Replication Machinery Family AT2G06510 53.1 9.7e-202 700.7
Cone2ag0799 . 1 628 Core DNA Replication Machinery Family AT5G08020 67.7 9.4e-250 860.1
Cone16ag0210 . 1 628 Core DNA Replication Machinery Family AT5G08020 67.2 5.1e-248 854.4
Cone12ag0531 . 6 811 Core DNA Replication Machinery Family AT5G45400 50.2 1.3e-233 807.0
Cone2ag0799 . 1 622 Core DNA Replication Machinery Family AT5G61000 69.3 2.9e-254 875.2
Cone16ag0210 . 1 622 Core DNA Replication Machinery Family AT5G61000 69.6 3.2e-253 871.7
Cone12ag0531 . 6 798 Core DNA Replication Machinery Family AT4G19130 55.3 3.2e-234 808.9
Cone8ag0528 . 6 820 Core DNA Replication Machinery Family AT4G19130 54.2 6.1e-233 804.7
Cone5ag0109 . 1 361 Core DNA Replication Machinery Family AT5G26680 87.8 1.5e-182 636.3
Cone1ag1587 . 1 361 Core DNA Replication Machinery Family AT5G26680 87.8 3.7e-181 631.7
Cone7ag0441 . 2 1118 Core DNA Replication Machinery Family AT1G08840 52.8 1.4e-306 1049.7
Cone1ag1430 . 1 296 Core DNA Replication Machinery Family AT2G25100 67.8 7.6e-114 407.5
Cone1ag0493 . 170 805 Core DNA Replication Machinery Family AT1G08130 76.3 3.5e-289 991.5
Cone19ag1014 . 25 624 Core DNA Replication Machinery Family AT1G08130 63.9 3.2e-226 782.3
Cone6ag0127 . 127 494 Core DNA Replication Machinery Family AT1G08130 66.8 2.9e-134 476.9
Cone1ag0493 . 206 805 Core DNA Replication Machinery Family AT1G49250 67.8 2.9e-236 815.5
Cone19ag1014 . 65 624 Core DNA Replication Machinery Family AT1G49250 57.8 4.2e-187 652.1
Cone6ag0127 . 165 495 Core DNA Replication Machinery Family AT1G49250 61.1 4.0e-105 379.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007427 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 2 1 1 0 1 0 33