Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone5ag1397 | ATGGGGAAGAAGAAGAAGAGAGTGTCATCGAAGGTTTGGTGCTATTACTGCGACCGTGAATTCGATGACGAAAAGATATTGGTGCAGCATCAGAAGGCGAAACACTTTAAGTGCCATGTCTGTCACAAGAAGCTTTCTACTGCAGGCGGCATGGTCATCCACGTCCTTCAGGTTCACAAGGAAAACGTCACCAAGGTACCTAATGCAAAACCAGAGAGGGAATCAACAGACATTGAGATATATGGAATGCAAGGAATCCCTCCTGACGTCTTAGCAGCACATTATGGAGAGGAAGATGAAGATGCTCCGTCAAAAGTGGCCAAATTAGATGTTCCATCTGGTCAGCTTGCTGGAGGTGTAGTACCAGGGTCATTGGGTATTGGATATCCTCCTCGACCAGCTTTAAGAGCAATGCGACCAGTTTACAGTTCTCCCATGCCACCACTACCTGGTGGTGCCTGGCCAGCTGCACCTCGTCCCCAACCTTGGTACCCGCCAAACCCTGTTGTTTCAGTTCCTCCTGGTCAATTGGGTTATGCACAACAGCCATTGTTTCCAGTGCAGAATGTGAGGCCACCTCTCACATCAACAATAACACATCCACTCCAGTTGTCACAGATAATGCCACCTGGGTTGCCATCATCAGCCCCTCCAGTTCCTGTATCACAACCCTTGTTCCCTGTTGGTGCCAATACCAGTATGTCTGCTCATGGTCCACCTTTTTCTGCTCCTATGCTTTCAACAAGCATTTCATCCATCTCTCAAGTAGAAGTTACCGGCTCAATGGGAACACACCTGGGAAATAATGCTTCTATGACAAGTAGCTACCAAGTCCAAGGCGTTCCAGGGGGGACATTAAACAATTCACATTCTTATGCCTCTGGTCCCAATACTGGAGGACCATCTATTGGACCACCTCCTGTAATTGCAAATAAAGCTCCTCCTAACCAGCCAGCAACAAATGAAGTCTATTTAGTTTGGGACGATGAGGCTATGTCTATGGAGGAAAGAAGGATGTCCTTAACAAAGTATCAGGTGCATGATGAATCTAGCCAGATTTGGTTGTTTACGTGTTTCGTGTTGATAGAGCTATGA | 1095 | 46.94 | MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMVIHVLQVHKENVTKVPNAKPERESTDIEIYGMQGIPPDVLAAHYGEEDEDAPSKVAKLDVPSGQLAGGVVPGSLGIGYPPRPALRAMRPVYSSPMPPLPGGAWPAAPRPQPWYPPNPVVSVPPGQLGYAQQPLFPVQNVRPPLTSTITHPLQLSQIMPPGLPSSAPPVPVSQPLFPVGANTSMSAHGPPFSAPMLSTSISSISQVEVTGSMGTHLGNNASMTSSYQVQGVPGGTLNNSHSYASGPNTGGPSIGPPPVIANKAPPNQPATNEVYLVWDDEAMSMEERRMSLTKYQVHDESSQIWLFTCFVLIEL | 364 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 8632932 | 8639936 | + | Conep05aG0144100.1 | Cone5ag1397 | 438415 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone5ag1397 | 364 | Gene3D | Classic Zinc Finger | 1 | 66 | - | - | |
| Cone5ag1397 | 364 | PANTHER | ZINC FINGER PROTEIN 207 | 1 | 352 | - | GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER) | |
| Cone5ag1397 | 364 | MobiDBLite | consensus disorder prediction | 283 | 316 | - | - | |
| Cone5ag1397 | 364 | CDD | SUF4-like | 13 | 92 | - | - | |
| Cone5ag1397 | 364 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 14 | 35 | IPR013087 | - | |
| Cone5ag1397 | 364 | SMART | c2h2final6 | 12 | 35 | IPR013087 | - | |
| Cone5ag1397 | 364 | SMART | c2h2final6 | 36 | 59 | IPR013087 | - | |
| Cone5ag1397 | 364 | MobiDBLite | consensus disorder prediction | 283 | 298 | - | - | |
| Cone5ag1397 | 364 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 38 | 59 | IPR013087 | - | |
| Cone5ag1397 | 364 | ProSiteProfiles | Zinc finger BED-type profile. | 7 | 66 | IPR003656 | GO:0003677(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone1ag0359 | Cone-Chr1:2971886 | Cone5ag1397 | Cone-Chr5:8632932 | 1.16E-226 | dispersed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 46205 | PF13516 | LRR_6 | 1 | CL0022 | Cone | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone5ag1397 | K27810 | - | mtr:11415762 | 496.893 |