Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1397 ATGGGGAAGAAGAAGAAGAGAGTGTCATCGAAGGTTTGGTGCTATTACTGCGACCGTGAATTCGATGACGAAAAGATATTGGTGCAGCATCAGAAGGCGAAACACTTTAAGTGCCATGTCTGTCACAAGAAGCTTTCTACTGCAGGCGGCATGGTCATCCACGTCCTTCAGGTTCACAAGGAAAACGTCACCAAGGTACCTAATGCAAAACCAGAGAGGGAATCAACAGACATTGAGATATATGGAATGCAAGGAATCCCTCCTGACGTCTTAGCAGCACATTATGGAGAGGAAGATGAAGATGCTCCGTCAAAAGTGGCCAAATTAGATGTTCCATCTGGTCAGCTTGCTGGAGGTGTAGTACCAGGGTCATTGGGTATTGGATATCCTCCTCGACCAGCTTTAAGAGCAATGCGACCAGTTTACAGTTCTCCCATGCCACCACTACCTGGTGGTGCCTGGCCAGCTGCACCTCGTCCCCAACCTTGGTACCCGCCAAACCCTGTTGTTTCAGTTCCTCCTGGTCAATTGGGTTATGCACAACAGCCATTGTTTCCAGTGCAGAATGTGAGGCCACCTCTCACATCAACAATAACACATCCACTCCAGTTGTCACAGATAATGCCACCTGGGTTGCCATCATCAGCCCCTCCAGTTCCTGTATCACAACCCTTGTTCCCTGTTGGTGCCAATACCAGTATGTCTGCTCATGGTCCACCTTTTTCTGCTCCTATGCTTTCAACAAGCATTTCATCCATCTCTCAAGTAGAAGTTACCGGCTCAATGGGAACACACCTGGGAAATAATGCTTCTATGACAAGTAGCTACCAAGTCCAAGGCGTTCCAGGGGGGACATTAAACAATTCACATTCTTATGCCTCTGGTCCCAATACTGGAGGACCATCTATTGGACCACCTCCTGTAATTGCAAATAAAGCTCCTCCTAACCAGCCAGCAACAAATGAAGTCTATTTAGTTTGGGACGATGAGGCTATGTCTATGGAGGAAAGAAGGATGTCCTTAACAAAGTATCAGGTGCATGATGAATCTAGCCAGATTTGGTTGTTTACGTGTTTCGTGTTGATAGAGCTATGA 1095 46.94 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMVIHVLQVHKENVTKVPNAKPERESTDIEIYGMQGIPPDVLAAHYGEEDEDAPSKVAKLDVPSGQLAGGVVPGSLGIGYPPRPALRAMRPVYSSPMPPLPGGAWPAAPRPQPWYPPNPVVSVPPGQLGYAQQPLFPVQNVRPPLTSTITHPLQLSQIMPPGLPSSAPPVPVSQPLFPVGANTSMSAHGPPFSAPMLSTSISSISQVEVTGSMGTHLGNNASMTSSYQVQGVPGGTLNNSHSYASGPNTGGPSIGPPPVIANKAPPNQPATNEVYLVWDDEAMSMEERRMSLTKYQVHDESSQIWLFTCFVLIEL 364
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 8632932 8639936 + Conep05aG0144100.1 Cone5ag1397 438415
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1397 364 Gene3D Classic Zinc Finger 1 66 - -
Cone5ag1397 364 PANTHER ZINC FINGER PROTEIN 207 1 352 - GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
Cone5ag1397 364 MobiDBLite consensus disorder prediction 283 316 - -
Cone5ag1397 364 CDD SUF4-like 13 92 - -
Cone5ag1397 364 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Cone5ag1397 364 SMART c2h2final6 12 35 IPR013087 -
Cone5ag1397 364 SMART c2h2final6 36 59 IPR013087 -
Cone5ag1397 364 MobiDBLite consensus disorder prediction 283 298 - -
Cone5ag1397 364 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Cone5ag1397 364 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0359 Cone-Chr1:2971886 Cone5ag1397 Cone-Chr5:8632932 1.16E-226 dispersed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46205 PF13516 LRR_6 1 CL0022 Cone TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1397 K27810 - mtr:11415762 496.893