Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1413 ATGGGGCCTCAAATCATGATAGGCATTGTAGTAGCTTTGGTAACTGTTTCACTCCAAGTTGGCACGATTGTTTGTGATGTATCATCCCAAATACCAGAAGATAAGTCTCAAGTGAATACCTGGTTTGCTAGTGCTGTAAAGCCTTTTACCGAGCGAAAGGCCGATCTAGACCCCAACCTTGTAACAGCCGAAGAGGGAGTGAAGGTGATTACGGTTGGTGCAGGTGGAGATTTCGCAACCATTGCAGCTGCCATTGAAAGCATTTCCTCTGGCAATACCAACCGTACTATCGTGTGGATCAAAAGTGGGGTTTATAAGGAGAAAATTAAGATTGAGAGAACAAAACCATTTGTCACCCTATATGGGGATCCTACTAATTTGCCAACTGTGACTTATGGTGGCACTGCCCAGAAGTTTGGAACATTTGATAGTGCAACCGTTATTGTGGAATCTGATTATTTTACTGCAGTTAATGTTATCTTTGAGAATTCTTCACCAAAACCAGATGGGAAGACAGATGCACAGGCAGTTGCACTAAGGATCTCAGGAGATAGAGCATCTTTTTACAAGTGTAGATTTGTTGGATATCAAGATACTCTTTGTGATGATAAGGGATTACATTTCTTCATGGGTTGTCAAATTCGTGGAACAGTCGATTTCATTTTCGGAAGTGGGACATCTCTATATTTAAGCAACGAGCTATTTATTGAAGGGGGCTTTGGATTCACGGTTATAACTGCACCAGCAAGTGATTCGGCGGATAATGGATTTGCATTTGTCCATAGCAAAATACTTGGAAACAGTAATGGAACATACTTGGGTAGGGCATGGAAAGCTAATCCTAAAGTGATCTATGCCTTTACCGAAATGGGAAGTGTCATCAGCGCTGCTGGATGGGGTGATAGTTATAATCCTTCACTTGACAAAACTGTATATTATGGAGAATACGAATGCTCTGGACCAGGGTCCAATATGGATTCTCGCAAAAGCTATGCCAAGCAATTAACCAGCGAAGAAGTTAAACCATATCTTAGTCTGGCCTATATTCAAGGTTCCGAGTGGTTACTCCCTCCCCCAACTCCTAAAGTATAG 1092 41.94 MGPQIMIGIVVALVTVSLQVGTIVCDVSSQIPEDKSQVNTWFASAVKPFTERKADLDPNLVTAEEGVKVITVGAGGDFATIAAAIESISSGNTNRTIVWIKSGVYKEKIKIERTKPFVTLYGDPTNLPTVTYGGTAQKFGTFDSATVIVESDYFTAVNVIFENSSPKPDGKTDAQAVALRISGDRASFYKCRFVGYQDTLCDDKGLHFFMGCQIRGTVDFIFGSGTSLYLSNELFIEGGFGFTVITAPASDSADNGFAFVHSKILGNSNGTYLGRAWKANPKVIYAFTEMGSVISAAGWGDSYNPSLDKTVYYGEYECSGPGSNMDSRKSYAKQLTSEEVKPYLSLAYIQGSEWLLPPPTPKV 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8844598 8845988 - Conep05aG0145800.1 Cone5ag1413 438431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1413 363 SUPERFAMILY Pectin lyase-like 69 357 IPR011050 -
Cone5ag1413 363 ProSitePatterns Pectinesterase signature 2. 214 223 IPR033131 -
Cone5ag1413 363 Pfam Pectinesterase 73 351 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cone5ag1413 363 Gene3D - 66 358 IPR012334 -
Cone5ag1413 363 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 47 355 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag1413 Cone-Chr5:8844598 Cone5ag1415 Cone-Chr5:8855432 6.24E-174 dispersed
Cone5ag1413 Cone-Chr5:8844598 Cone5ag1414 Cone-Chr5:8848508 2.12E-105 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1413 K01051 - mdm:103401623 410.223