Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1415 ATGGATCCAACCATGTTGAGCATCATAGGTATTCTAGTACTACTCATTTTTCACCAACTGAGTCTAGTTTCATCTCAGTCCTCTCAAATACCACAAGATAGGTCTCAAATCAATCAGTGGTATTCTAGTAACGTAAGACCCTATACCACTCGGAGAGCTACTCTAGACCCTGCTCTCGTGAAAGCTGAGGTTGCGAGAAAGGTTATTACGGTAAGAAAAGATGGAACAGGAAATTTCAAAACAATCACTGATGCTATTAAGAGCATTCCATCAGGAAATACGGGACGTGCAATTGTGTATATTGGAGGTGGTGTTTATAGAGAGAAAGTTAAGATTGATAGAACACAACCATTCGTAACACTATATGGACACCCTAATGACATGCCAACTTTGACCTTTGCTGGCACTTCAAAGCAATACGGAACATTTGATAGTGCAACTTTAATTGTGGAATCCGATTATTTCACGGCTGCTAATGTAATCTTTGAGAATTCTTCACCAAACCCCAGTGGGAAAATGGATGCACAAGCAGTTGCAATGAGGATTTCAGGAGATAAAGCATCATTTTATCGGTGTAAGTTTCTTGGATATCAGGACACTCTTTGTGATGATAAGGGGTCACACTTTTTCAAAGACTGTTTCATTCAAGGAACCGTAGACTTTATATTTGGAAGTGGGACATCTCTTTATCTGAATAATGCATTGTTCGTACAAAATGGCTTTGGATTCACAACGATCACTGCACCAGCAAGTGATGCTAAGAACAATGGATTTTCATTTGTTCATAGTACAATATCTGGAAATAGTAATGGTACATATTTAGGTAGGGCATGGAAAGCTAAGCCTAGAGTGGTGTATGCCTATACTAGAATGGGCAGCGTCGTTAATCCTGCTGGATGGAGCAATAGCTACGATCCAAAACTTGATAAATCGGTCTTCTATGGTGAGTACAAGTGCACTGGGCCAGGTTCAAGTCTAGTAAAACGAAAAAAATATGCTAGACAATTAACTGATGAAGAAGTAAAGCCATTCATCAACATAAATTTTGTCAAGGGTACCACGTGGTTGCTTCCTCCTCCAAATCTTTAA 1089 39.39 MDPTMLSIIGILVLLIFHQLSLVSSQSSQIPQDRSQINQWYSSNVRPYTTRRATLDPALVKAEVARKVITVRKDGTGNFKTITDAIKSIPSGNTGRAIVYIGGGVYREKVKIDRTQPFVTLYGHPNDMPTLTFAGTSKQYGTFDSATLIVESDYFTAANVIFENSSPNPSGKMDAQAVAMRISGDKASFYRCKFLGYQDTLCDDKGSHFFKDCFIQGTVDFIFGSGTSLYLNNALFVQNGFGFTTITAPASDAKNNGFSFVHSTISGNSNGTYLGRAWKAKPRVVYAYTRMGSVVNPAGWSNSYDPKLDKSVFYGEYKCTGPGSSLVKRKKYARQLTDEEVKPFININFVKGTTWLLPPPNL 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8855432 8856861 + Conep05aG0146000.1 Cone5ag1415 438433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1415 362 FunFam Pectinesterase 64 358 - -
Cone5ag1415 362 ProSitePatterns Pectinesterase signature 2. 215 224 IPR033131 -
Cone5ag1415 362 SUPERFAMILY Pectin lyase-like 64 356 IPR011050 -
Cone5ag1415 362 Gene3D - 63 358 IPR012334 -
Cone5ag1415 362 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 22 356 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Cone5ag1415 362 Pfam Pectinesterase 69 352 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0623 Cone-Chr3:3081664 Cone5ag1415 Cone-Chr5:8855432 2.84E-122 dispersed
Cone5ag0995 Cone-Chr5:4291864 Cone5ag1415 Cone-Chr5:8855432 2.38E-158 dispersed
Cone5ag1413 Cone-Chr5:8844598 Cone5ag1415 Cone-Chr5:8855432 6.24E-174 dispersed
Cone5ag1415 Cone-Chr5:8855432 Cone7ag1167 Cone-Chr7:8690853 2.30E-74 dispersed
Cone5ag1414 Cone-Chr5:8848508 Cone5ag1415 Cone-Chr5:8855432 3.80E-140 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1415 K01051 - cit:102610921 441.039