Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone5ag1418 | ATGGCTTCTCGCGCCGTTGTTCCTCCAAAAAATCAGCAGCAACAACCGAGAGGCGAAGTGAACCAGAAAATAATAGCAGCAGAGAGAAGAACAAGGCGAGTTCTTCAAGATATTGGGAATTTAGCCCTTGATCGAGCAAAGCCCCTTCCTGCCAAGAAGATATCAGTCAGAGAGACAAAACTGGATGATAATAATAACAGACCTCCTCAAAAGATCGTAACAGAAAACAACAACAAGAAAAGCTCCAACAAGGCATTTACTTCAGTCCTCAGCGCTCGAAGCAAGGCGGAGGCAGCAGCAACTCGCAGGGCCCACTGCAGCAGTAATAACGACATCGATGGGGCGGATACTGAAAATGAACTGGCTGTGGTTGAGTACGTAGACGACATGTACAAGTTCTACAAATCAGCAGAAGATGAAAACAGGGTAGAAGACTATATGGACTCACAGCTAGATATAAACGCTAAGATGAGATCAATCCTAATTGACTGGTTAATTGAAGTGCATAGAAAATTCGAGCTTATGCCGGAAACTCTTTACCTAACAGTAAACATTGTCGATCGGTTTCTAGAATCGAAGGCCATATCAAGGCGGGAACTTCAGTTAGTTGGGATTAGTTCTATGCTTATAGCTTCCAAATATGAAGAGATTTGGGCTCCTGAGGTGAACGACTTTGTTAAGATATCAGCCAATGCTTATGTGAGAGAAGAGGTTCTGTTAATGGAGAAGGCAATTCTAGGAAAGCTAGAATGGTATCTAACTGTTCCAACTCCATATGTTTTCCTCGTTCGCTATGTCAAGGCTTCTGAATCATCCGATAAGGAGATGGAGAATATGGTGTTCTACCTAGCCGAGTTGGGTCTTGTCCATTATCCAGTGAGTGTTAGTTATAGCCCTTCTATGATTGCTGCTGCTGCCGTTTACGGGGCTAGGTGGGCCCTAGAGACGAGGCCATTATGGACTGCAACGTTAAAGCATCACACTGGTTATGATGATGTAGAAGATGAAGAGCTGATTGGCTGTGCGAAGGTGTTGGTTAGCTTACACTGTGGAGTAGCTGATAGCAAACTGAAGGCCGTGTATAGGAAGTTTTGTAGTTCGGATCGATGTCAGGTTGCTCTTAGGAAGTCTGCTAAGGAATTAGTATGA | 1149 | 44.04 | MASRAVVPPKNQQQQPRGEVNQKIIAAERRTRRVLQDIGNLALDRAKPLPAKKISVRETKLDDNNNRPPQKIVTENNNKKSSNKAFTSVLSARSKAEAAATRRAHCSSNNDIDGADTENELAVVEYVDDMYKFYKSAEDENRVEDYMDSQLDINAKMRSILIDWLIEVHRKFELMPETLYLTVNIVDRFLESKAISRRELQLVGISSMLIASKYEEIWAPEVNDFVKISANAYVREEVLLMEKAILGKLEWYLTVPTPYVFLVRYVKASESSDKEMENMVFYLAELGLVHYPVSVSYSPSMIAAAAVYGARWALETRPLWTATLKHHTGYDDVEDEELIGCAKVLVSLHCGVADSKLKAVYRKFCSSDRCQVALRKSAKELV | 382 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 8903977 | 8906229 | - | Conep05aG0146300.1 | Cone5ag1418 | 438436 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone5ag1418 | 382 | SMART | cyclin_7 | 260 | 347 | IPR013763 | - | |
Cone5ag1418 | 382 | SMART | cyclin_7 | 163 | 247 | IPR013763 | - | |
Cone5ag1418 | 382 | SUPERFAMILY | Cyclin-like | 257 | 377 | IPR036915 | - | |
Cone5ag1418 | 382 | ProSitePatterns | Cyclins signature. | 158 | 189 | IPR048258 | - | |
Cone5ag1418 | 382 | FunFam | G2/mitotic-specific cyclin-1 | 250 | 373 | - | - | |
Cone5ag1418 | 382 | Pfam | Cyclin, N-terminal domain | 129 | 254 | IPR006671 | - | |
Cone5ag1418 | 382 | Gene3D | - | 143 | 254 | - | - | |
Cone5ag1418 | 382 | Pfam | Cyclin, C-terminal domain | 256 | 374 | IPR004367 | - | |
Cone5ag1418 | 382 | Gene3D | - | 129 | 373 | - | - | |
Cone5ag1418 | 382 | MobiDBLite | consensus disorder prediction | 56 | 79 | - | - | |
Cone5ag1418 | 382 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cone5ag1418 | 382 | PIRSF | Cyclin_A_B_D_E | 2 | 382 | IPR046965 | GO:0016538(InterPro)|GO:0044772(InterPro) | |
Cone5ag1418 | 382 | PANTHER | CYCLINS | 108 | 364 | IPR039361 | GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER) | |
Cone5ag1418 | 382 | SUPERFAMILY | Cyclin-like | 118 | 253 | IPR036915 | - | |
Cone5ag1418 | 382 | FunFam | G2/mitotic-specific cyclin | 142 | 249 | - | - | |
Cone5ag1418 | 382 | SMART | Cyclin_C_2 | 256 | 378 | IPR004367 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone3ag0499 | Cone-Chr3:2456728 | Cone5ag1418 | Cone-Chr5:8903977 | 8.43E-115 | dispersed | |
Cone5ag1418 | Cone-Chr5:8903977 | Cone7ag1934 | Cone-Chr7:12340108 | 2.11E-75 | dispersed | |
Cone5ag1418 | Cone-Chr5:8903977 | Cone10ag0468 | Cone-Chr10:2174874 | 1.63E-115 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone5ag1418 | K21777 | - | csv:101222873 | 435.261 |