Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1418 ATGGCTTCTCGCGCCGTTGTTCCTCCAAAAAATCAGCAGCAACAACCGAGAGGCGAAGTGAACCAGAAAATAATAGCAGCAGAGAGAAGAACAAGGCGAGTTCTTCAAGATATTGGGAATTTAGCCCTTGATCGAGCAAAGCCCCTTCCTGCCAAGAAGATATCAGTCAGAGAGACAAAACTGGATGATAATAATAACAGACCTCCTCAAAAGATCGTAACAGAAAACAACAACAAGAAAAGCTCCAACAAGGCATTTACTTCAGTCCTCAGCGCTCGAAGCAAGGCGGAGGCAGCAGCAACTCGCAGGGCCCACTGCAGCAGTAATAACGACATCGATGGGGCGGATACTGAAAATGAACTGGCTGTGGTTGAGTACGTAGACGACATGTACAAGTTCTACAAATCAGCAGAAGATGAAAACAGGGTAGAAGACTATATGGACTCACAGCTAGATATAAACGCTAAGATGAGATCAATCCTAATTGACTGGTTAATTGAAGTGCATAGAAAATTCGAGCTTATGCCGGAAACTCTTTACCTAACAGTAAACATTGTCGATCGGTTTCTAGAATCGAAGGCCATATCAAGGCGGGAACTTCAGTTAGTTGGGATTAGTTCTATGCTTATAGCTTCCAAATATGAAGAGATTTGGGCTCCTGAGGTGAACGACTTTGTTAAGATATCAGCCAATGCTTATGTGAGAGAAGAGGTTCTGTTAATGGAGAAGGCAATTCTAGGAAAGCTAGAATGGTATCTAACTGTTCCAACTCCATATGTTTTCCTCGTTCGCTATGTCAAGGCTTCTGAATCATCCGATAAGGAGATGGAGAATATGGTGTTCTACCTAGCCGAGTTGGGTCTTGTCCATTATCCAGTGAGTGTTAGTTATAGCCCTTCTATGATTGCTGCTGCTGCCGTTTACGGGGCTAGGTGGGCCCTAGAGACGAGGCCATTATGGACTGCAACGTTAAAGCATCACACTGGTTATGATGATGTAGAAGATGAAGAGCTGATTGGCTGTGCGAAGGTGTTGGTTAGCTTACACTGTGGAGTAGCTGATAGCAAACTGAAGGCCGTGTATAGGAAGTTTTGTAGTTCGGATCGATGTCAGGTTGCTCTTAGGAAGTCTGCTAAGGAATTAGTATGA 1149 44.04 MASRAVVPPKNQQQQPRGEVNQKIIAAERRTRRVLQDIGNLALDRAKPLPAKKISVRETKLDDNNNRPPQKIVTENNNKKSSNKAFTSVLSARSKAEAAATRRAHCSSNNDIDGADTENELAVVEYVDDMYKFYKSAEDENRVEDYMDSQLDINAKMRSILIDWLIEVHRKFELMPETLYLTVNIVDRFLESKAISRRELQLVGISSMLIASKYEEIWAPEVNDFVKISANAYVREEVLLMEKAILGKLEWYLTVPTPYVFLVRYVKASESSDKEMENMVFYLAELGLVHYPVSVSYSPSMIAAAAVYGARWALETRPLWTATLKHHTGYDDVEDEELIGCAKVLVSLHCGVADSKLKAVYRKFCSSDRCQVALRKSAKELV 382
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 8903977 8906229 - Conep05aG0146300.1 Cone5ag1418 438436
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1418 382 SMART cyclin_7 260 347 IPR013763 -
Cone5ag1418 382 SMART cyclin_7 163 247 IPR013763 -
Cone5ag1418 382 SUPERFAMILY Cyclin-like 257 377 IPR036915 -
Cone5ag1418 382 ProSitePatterns Cyclins signature. 158 189 IPR048258 -
Cone5ag1418 382 FunFam G2/mitotic-specific cyclin-1 250 373 - -
Cone5ag1418 382 Pfam Cyclin, N-terminal domain 129 254 IPR006671 -
Cone5ag1418 382 Gene3D - 143 254 - -
Cone5ag1418 382 Pfam Cyclin, C-terminal domain 256 374 IPR004367 -
Cone5ag1418 382 Gene3D - 129 373 - -
Cone5ag1418 382 MobiDBLite consensus disorder prediction 56 79 - -
Cone5ag1418 382 MobiDBLite consensus disorder prediction 1 20 - -
Cone5ag1418 382 PIRSF Cyclin_A_B_D_E 2 382 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cone5ag1418 382 PANTHER CYCLINS 108 364 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cone5ag1418 382 SUPERFAMILY Cyclin-like 118 253 IPR036915 -
Cone5ag1418 382 FunFam G2/mitotic-specific cyclin 142 249 - -
Cone5ag1418 382 SMART Cyclin_C_2 256 378 IPR004367 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0499 Cone-Chr3:2456728 Cone5ag1418 Cone-Chr5:8903977 8.43E-115 dispersed
Cone5ag1418 Cone-Chr5:8903977 Cone7ag1934 Cone-Chr7:12340108 2.11E-75 dispersed
Cone5ag1418 Cone-Chr5:8903977 Cone10ag0468 Cone-Chr10:2174874 1.63E-115 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1418 K21777 - csv:101222873 435.261