Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1426 ATGAATCAATTCATAGTGAACAAGCGTGTAGGTAAATATGAGGTGGGAAGGACAATTGGCGAGGGAACATTTGCAAAAGTGAAATTTGCAAGAAATTCAGAAACTGGTGAACCTGTTGCACTCAAGATCATTGACAAAGAGAAGGTTCTCACACACAAGTTTTCTGAACAGATCAAGCGGGAAATAGCTACAATGAAGTTGATAAAGCATCCAAATGTGATTCAACTATATGAGGTGATAGCAAGCAAAACAAGAATATTTCTTGTAATGGAGTTTGTCGCTGGAGGGGAGCTATATGATAAAATTGCAAACCATGGAAGGATGAGAGAAGGCGAAGCGAGAAGATACTTCCAGCAGCTTATAAATGTTGTTGATTATTGTCATAGCAGGGGCGTCTACCACAGGGACCTAAAGCTGGAAAATCTACTGATTGATGCCAATGGGAACCTTAAAATTTCTGATTTTGGATTGAGCGCACTATCCAAACAAGTTAAGGATGATGGACTTCTTCATACTACTTGTGGTACTCCAAACTATGTTGCTCCTGAGGTCCTTAATGATAGAGGCTATGATGGTTCAACAGCCGATGTGTGGTCATGTGGAGTTATACTCTTTGTACTGCTTGCAGGTTACTTGCCTTTTGATGATTCTAATCTTATGAATCTCTATAGAAATATATCAGCTTCCGAATTTACTTTCCCCCCTTGGGTCTCTCTTGGTGCCATGAAATTGATAACTCGAATCTTGGATCCAAATCCTATCACTCGTATCTCCATAGCAGAAATTTTGCAAGATGAATGGTTTAAGAAGCACTATGAGGCACCCATGTTTGAAGAAAAAGAGGATATAAACTTGGACGGTGTCAAAGCTGTTTCTAAAGATTCAGAAGAATACCTTGTAACAGCGAAGGAAGAGAAGCCAGTGGCCATGAACGCTTTTGACATTATTTCGATGTCAAAAGGGCTCAACTTAGCCAATTTGTTTGATATAGAACAGGAATTTAGGAGAGAAAGAAGATTCACATCTAAATTCCCTGCCAATGAGATCATATCCAAAATTGAAGAGGCTGCAAAACCTCTGGGTTTAGATGTACAGAAAAAAAATTACAAGCTAAGGCTAGAAAATGTGAAAGCTGGACGAAAGGGGAACCTAAATGTTACCATGGAGATTTTGCAAGTTGCTCCTTCTCTTCATATGGTTAATTTGCGGAAAGCGAAAGGGGACACTTTGGAGTTTCATAAGGAACTGCTCTTCAAAGGAGATACAGAGATCTTAAGCACACCATACTCTAAGAGCTTGTTGCGTTGA 1308 39.53 MNQFIVNKRVGKYEVGRTIGEGTFAKVKFARNSETGEPVALKIIDKEKVLTHKFSEQIKREIATMKLIKHPNVIQLYEVIASKTRIFLVMEFVAGGELYDKIANHGRMREGEARRYFQQLINVVDYCHSRGVYHRDLKLENLLIDANGNLKISDFGLSALSKQVKDDGLLHTTCGTPNYVAPEVLNDRGYDGSTADVWSCGVILFVLLAGYLPFDDSNLMNLYRNISASEFTFPPWVSLGAMKLITRILDPNPITRISIAEILQDEWFKKHYEAPMFEEKEDINLDGVKAVSKDSEEYLVTAKEEKPVAMNAFDIISMSKGLNLANLFDIEQEFRRERRFTSKFPANEIISKIEEAAKPLGLDVQKKNYKLRLENVKAGRKGNLNVTMEILQVAPSLHMVNLRKAKGDTLEFHKELLFKGDTEILSTPYSKSLLR 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9014618 9038499 - Conep05aG0147100.1 Cone5ag1426 438444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1426 435 FunFam Non-specific serine/threonine protein kinase 5 92 - -
Cone5ag1426 435 FunFam Non-specific serine/threonine protein kinase 304 425 - -
Cone5ag1426 435 SMART serkin_6 13 268 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1426 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag1426 435 SUPERFAMILY Protein kinase-like (PK-like) 9 280 IPR011009 -
Cone5ag1426 435 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 415 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cone5ag1426 435 Gene3D Kinase associated domain 1, KA1 304 427 - -
Cone5ag1426 435 Pfam Protein kinase domain 13 268 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1426 435 FunFam Non-specific serine/threonine protein kinase 6 308 - -
Cone5ag1426 435 Pfam NAF domain 307 366 IPR004041 GO:0007165(InterPro)
Cone5ag1426 435 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524(InterPro)
Cone5ag1426 435 ProSiteProfiles Protein kinase domain profile. 13 268 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1426 435 CDD CIPK_C 311 414 - -
Cone5ag1426 435 Gene3D Phosphorylase Kinase; domain 1 4 92 - -
Cone5ag1426 435 Gene3D Transferase(Phosphotransferase) domain 1 93 296 - -
Cone5ag1426 435 ProSiteProfiles NAF domain profile. 305 329 IPR018451 GO:0007165(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1560 Cone-Chr11:10850903 Cone5ag1426 Cone-Chr5:9014618 7.24E-244 dispersed
Cone18ag1315 Cone-Chr18:9128306 Cone5ag1426 Cone-Chr5:9014618 1.91E-106 dispersed
Cone5ag1426 Cone-Chr5:9014618 Cone5ag1568 Cone-Chr5:10936351 7.11E-189 dispersed
Cone8ag0038 Cone-Chr8:226556 Cone5ag1426 Cone-Chr5:9014618 1.91E-30 dispersed
Cone5ag1426 Cone-Chr5:9014618 Cone6ag1118 Cone-Chr6:7140717 6.67E-195 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82881 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1426 - - - 0.0