Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1429 ATGGCATCAACATCAAGTTCCATGATCTTCTTCTACTTTCTTGTGATTTCTGTGTCATTTTCAGGATCTGTTCAAGCTTACAAGAACTACACAGTCGGGGACTCATTGGGTTGGTATGACAATCTCTTGAAGCCTACTCTTAATTACCAAAAATGGGTTTCTGACAAGAATTTCAGCTTGGGAGATTTTCTCATTTTCAATACAGATAACAACCACTCAGTCGTCCAAACCTACAATTTCACCACCTACAAGCTTTGTGATTACGACAATGCTCAAGAAAACGATACAATTCAATGGTCGTCAGCCGATCCATCAGCAACTGCGCCGGAAACGACCACAGTAGCAGTTCCTCTCGTTAAAGAAGGCATGAACTATTTCTTTTCAGGCAATTATGATGGGGAGCAATGCAAGCATGGCCAACACTTTAAGGTAAATGTGACGCATGGCCAAGGCTTACCCCCAAGTTTGAAGAGCCCATCGGAAGATTCTCCAGCTCCAGCGAATCCCGATTCCGGTGATGATGAATCTGCGCCAGACACTCTTGTACCTTCCAATTACAATAACCCTCGAGAAGAGGAAGCTGATAACGAGGAATCTGGGTCTGTTTCATTATCAAAGTACTTAAAGCTTACAGATGTAACAATGAATTTGTTTATCATGTTATTCATTGGGTTTGTTTGCGTGATTTGA 690 41.88 MASTSSSMIFFYFLVISVSFSGSVQAYKNYTVGDSLGWYDNLLKPTLNYQKWVSDKNFSLGDFLIFNTDNNHSVVQTYNFTTYKLCDYDNAQENDTIQWSSADPSATAPETTTVAVPLVKEGMNYFFSGNYDGEQCKHGQHFKVNVTHGQGLPPSLKSPSEDSPAPANPDSGDDESAPDTLVPSNYNNPREEEADNEESGSVSLSKYLKLTDVTMNLFIMLFIGFVCVI 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9098513 9100691 + Conep05aG0147400.1 Cone5ag1429 438447

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1429 229 FunFam Early nodulin-like protein 18 27 149 - -
Cone5ag1429 229 ProSiteProfiles Phytocyanin domain profile. 28 148 IPR003245 GO:0009055(InterPro)
Cone5ag1429 229 Pfam Plastocyanin-like domain 47 140 IPR003245 GO:0009055(InterPro)
Cone5ag1429 229 Gene3D - 26 149 IPR008972 -
Cone5ag1429 229 MobiDBLite consensus disorder prediction 147 202 - -
Cone5ag1429 229 MobiDBLite consensus disorder prediction 151 165 - -
Cone5ag1429 229 SUPERFAMILY Cupredoxins 28 147 IPR008972 -
Cone5ag1429 229 CDD Phytocyanin 28 146 - -
Cone5ag1429 229 PANTHER BLUE COPPER PROTEIN 15 161 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1429 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0375 Cone-Chr11:1839974 Cone5ag1429 Cone-Chr5:9098513 6.74E-39 dispersed
Cone5ag1429 Cone-Chr5:9098513 Cone7ag0625 Cone-Chr7:3123599 5.87E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g956 . . . . . . . . . . . . . . . Cpe05g00463 . . . . . . . . Cla02g02197 Cam02g2342 Cec02g2381 Cco02g2423 Clacu02g2315 Cmu02g2248 Cre02g2575 . Cone5ag1429 . . . Csa06g02492 Chy05g00185 Cme05g00219 . . . . . . . . . . Cmo20g00135 . Cma20g00126 . Car20g00109 Cpe16g00842 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone12ag1470 . 12 143 Phytocyanin Superfamily AT5G53870 54.5 1.7e-36 151.0
Cone6ag0153 . 11 136 Phytocyanin Superfamily AT4G27520 54.8 2.8e-36 150.2
Cone7ag0492 . 34 153 Phytocyanin Superfamily AT3G01070 62.8 3.5e-37 152.1
Cone4ag0517 . 34 132 Phytocyanin Superfamily AT3G01070 69.0 6.0e-37 151.4
Cone20ag0319 . 13 172 Phytocyanin Superfamily AT2G25060 54.9 5.1e-42 168.3
Cone17ag0978 . 12 168 Phytocyanin Superfamily AT2G25060 51.5 1.4e-39 160.2
Cone7ag0492 . 27 181 Phytocyanin Superfamily AT5G15350 58.2 4.8e-50 194.9
Cone4ag0517 . 13 149 Phytocyanin Superfamily AT5G15350 58.4 7.2e-46 181.0
Cone20ag0319 . 17 172 Phytocyanin Superfamily AT4G31840 53.5 8.5e-42 167.5
Cone17ag0978 . 16 170 Phytocyanin Superfamily AT4G31840 52.3 6.1e-40 161.4
Cone12ag1470 . 12 143 Phytocyanin Superfamily AT5G53870 54.5 1.7e-36 151.0
Cone6ag0153 . 11 136 Phytocyanin Superfamily AT4G27520 54.8 2.8e-36 150.2
Cone8ag0534 . 30 170 Phytocyanin Superfamily AT1G64640 60.1 1.5e-39 160.2
Cone20ag0319 . 13 172 Phytocyanin Superfamily AT2G25060 54.9 5.1e-42 168.3
Cone17ag0978 . 12 168 Phytocyanin Superfamily AT2G25060 51.5 1.4e-39 160.2
Cone20ag0319 . 17 172 Phytocyanin Superfamily AT4G31840 53.5 8.5e-42 167.5
Cone17ag0978 . 16 170 Phytocyanin Superfamily AT4G31840 52.3 6.1e-40 161.4
Cone7ag0492 . 34 153 Phytocyanin Superfamily AT3G01070 62.8 3.5e-37 152.1
Cone4ag0517 . 34 132 Phytocyanin Superfamily AT3G01070 69.0 6.0e-37 151.4
Cone7ag0492 . 27 181 Phytocyanin Superfamily AT5G15350 58.2 4.8e-50 194.9
Cone4ag0517 . 13 149 Phytocyanin Superfamily AT5G15350 58.4 7.2e-46 181.0
Cone5ag1429 . 1 225 Phytocyanin Superfamily AT1G08500 54.4 7.8e-64 241.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013663 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 0 1 1 1 26