Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1448 ATGCAGTCAAAGTCTGAAACCACAAATCGAATCGATCCTGTTCCACAGAACATTCCGCAGACTACTGCTTATTCTGAACCTTGGTGGCGAAGTATTGAATACAATCCTGTCTCCAAAGCTGCAGCTGGTGTTAATGTTTCTATTGCAACTTCATTGGAACGTCCGAATGGTGGTTCACAGCCCAATGATGGTCACTCTATGTCAAATGATGATCTGAATGAGGACTATGATGATGCCAAAGACTCACAAACTACTGGATCTCCTCATTCGGGTACATGTAATAGACAAGAAAACCAAATCGGTCTGCATGTAACTTCATCTGAACCTATGAGGCATGGTGAATTCATCAGACAATCGTCAGAGCTTGAACTTGTCAGCCACTCTATTGCCTGTGCGTCAAACCCGTATCAGGATCCATGTTTTGGGGGAATGATGCCTGCTTATGGACATCAACATTTTAATTATCTTCCCTTTATGGGAATGCCACACAGAATGCCTCTGCCTCCTGAGATGACTCAGGAGCCTGTTTTCGTGAATGCTAAACAATACCAGGGGATTCTTAGGCGAAGGCAAGCACGTGCTAAGGCAGAGATTGAAAAGAAAGTGATAAAAGTTAGAAAGCCATACCTTCATGAATCTCGGCACCAGCATGCTATGAGAAGAGCAAGAGGAACTGGAGGCCGATTTGCCAAGAAAAATGAAGCCGATGAAGGAAATTCTGGTCCAGCCCTTTCTTCCCAATCTGCCATATCATCTCGTTCTGAACTAATGCCCTCTAATTCAAATGGAATCTGGAATTCCTCCAATGGTCAAGAAAAATTAAGACTGGCCCAAAATCACAGCGGATTCCAGGCACTGGCCCATAAATTGCGTGAAAGAGGGGATGATGGAGACTGTTCAGGTCAGCAATGGGTAAGCATTTCGACGAGCCAAACTTCACAGAGATGTCTTGCCATCCAGTAA 963 44.44 MQSKSETTNRIDPVPQNIPQTTAYSEPWWRSIEYNPVSKAAAGVNVSIATSLERPNGGSQPNDGHSMSNDDLNEDYDDAKDSQTTGSPHSGTCNRQENQIGLHVTSSEPMRHGEFIRQSSELELVSHSIACASNPYQDPCFGGMMPAYGHQHFNYLPFMGMPHRMPLPPEMTQEPVFVNAKQYQGILRRRQARAKAEIEKKVIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEADEGNSGPALSSQSAISSRSELMPSNSNGIWNSSNGQEKLRLAQNHSGFQALAHKLRERGDDGDCSGQQWVSISTSQTSQRCLAIQ 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9392913 9396873 - Conep05aG0149400.1 Cone5ag1448 438466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1448 320 MobiDBLite consensus disorder prediction 1 21 - -
Cone5ag1448 320 MobiDBLite consensus disorder prediction 51 67 - -
Cone5ag1448 320 MobiDBLite consensus disorder prediction 212 226 - -
Cone5ag1448 320 Gene3D - 172 233 - -
Cone5ag1448 320 MobiDBLite consensus disorder prediction 239 268 - -
Cone5ag1448 320 MobiDBLite consensus disorder prediction 51 98 - -
Cone5ag1448 320 MobiDBLite consensus disorder prediction 83 98 - -
Cone5ag1448 320 ProSitePatterns NF-YA/HAP2 subunit signature. 177 197 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Cone5ag1448 320 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 174 229 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag1448 320 PRINTS CCAAT-binding transcription factor subunit B signature 175 197 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag1448 320 PRINTS CCAAT-binding transcription factor subunit B signature 206 229 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag1448 320 SMART cbf3 171 232 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag1448 320 MobiDBLite consensus disorder prediction 212 268 - -
Cone5ag1448 320 ProSiteProfiles NF-YA/HAP2 family profile. 172 232 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag1448 320 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 21 280 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cone5ag1448 320 MobiDBLite consensus disorder prediction 68 82 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1494 Cone-Chr11:10560424 Cone5ag1448 Cone-Chr5:9392913 1.07E-90 dispersed
Cone18ag0101 Cone-Chr18:528266 Cone5ag1448 Cone-Chr5:9392913 5.57E-97 dispersed
Cone5ag1448 Cone-Chr5:9392913 Cone9ag1129 Cone-Chr9:7752033 1.04E-27 dispersed
Cone1ag0452 Cone-Chr1:4115485 Cone5ag1448 Cone-Chr5:9392913 3.12E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46210 PF03227 GILT 1.90E-29 CL0172 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1448 K08064 - csv:101212961 342.043