Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1461 ATGTGGCCGTCTGCTGCTACATCTTCCCGACCGGCCACCGCAATCAACTACGGCCTGGCCCCACCTGAGATGGGCATGGTGGGCCTACGTGATCTCTTCGTTGTTGCTCATCACGGCGGCCAACACGAACCCGCCAATATCATTTCGGACCCTCATTCCATAAATGGGTCTATCCCGGCCACCGCGCTTGGGGTCGGAGTCATTCCGCTGCTTACGGCAACGCCGTGCTTGGCGGCGCCACCGCATGGAATGAGCGGCCACGAGGATCATAATATTAGTAGAGGTGGAATACATTTATGGCAGAATCAACAATTGATATCATCTCATCAGCATGGACATTACTTGAAGAAACAACCCAATACTCTTCATCATCATGATCATCATAATACGAATTCTGGGAATATGGTTCAAGGAGGAGGATCAGGGATTGGCGGTGGTGGGATAGGTGGTTCTTCTTCGTCAGGGTCGACGGCTACTTGTCAAGATTGTGGAAATCAGGCAAAGAAGGATTGTAGTCATAGAAGGTGTAGAACATGTTGTAAGAGTCGAGGGTTCGTTTGTGCGACTCATGTGAAGAGCACGTGGGTTCCGGCTGCCCGTCGGAGGGAGCGGCAACTGATGTCTGCCACGGCAGCACCGCAAGCCGGGTCTTCTGGGTCTACTTCTGGTGCTAAGAAGCCAAGACTAATTGCATCTCGAACCACCACTTCTCCCACTTCTACTTCTAACACCACCCCTAGAAGCTTCGACACTAGCTCTAGCCATCAAGATGGGAGTTTTAAAGAGGCATTGCCGGGACAAGTACGAGCACCGGCAGTTTTCAAGTGCGTTAGAGTAACGGCGGTGGAAGATGGAGAGGATGAGTATGCTTATCAAGCTGTGGTCAAAATTGGTGGTCATGTTTTTAAAGGGTTTTTGTATGATCAAGGTGTTGAAACTAGAGATTCCTTTCCCAACATTTCCGAGTTGCATTTGGGAGGTGGCATCAATATTGGCAATGGTGGTGGCGGCGGCGGTGGAGGAGGAGGCCGAAATGGGGGGTCCTCATCTTCTCCAATTCTTGACCCGAATGAAGTTTTTGGCGCTAGTGGAGGAGGATTGCTTGGAGATACTACTACCTATGGTAATCAAATTAACTAA 1140 50.35 MWPSAATSSRPATAINYGLAPPEMGMVGLRDLFVVAHHGGQHEPANIISDPHSINGSIPATALGVGVIPLLTATPCLAAPPHGMSGHEDHNISRGGIHLWQNQQLISSHQHGHYLKKQPNTLHHHDHHNTNSGNMVQGGGSGIGGGGIGGSSSSGSTATCQDCGNQAKKDCSHRRCRTCCKSRGFVCATHVKSTWVPAARRRERQLMSATAAPQAGSSGSTSGAKKPRLIASRTTTSPTSTSNTTPRSFDTSSSHQDGSFKEALPGQVRAPAVFKCVRVTAVEDGEDEYAYQAVVKIGGHVFKGFLYDQGVETRDSFPNISELHLGGGINIGNGGGGGGGGGGRNGGSSSSPILDPNEVFGASGGGLLGDTTTYGNQIN 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9602763 9604194 + Conep05aG0150700.1 Cone5ag1461 438479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1461 379 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 86 361 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
Cone5ag1461 379 Pfam Domain of unknown function (DUF702) 157 312 - -
Cone5ag1461 379 MobiDBLite consensus disorder prediction 205 264 - -
Cone5ag1461 379 NCBIfam LRP1 C-terminal domain 264 311 IPR006511 -
Cone5ag1461 379 MobiDBLite consensus disorder prediction 119 159 - -
Cone5ag1461 379 MobiDBLite consensus disorder prediction 210 260 - -
Cone5ag1461 379 MobiDBLite consensus disorder prediction 334 366 - -
Cone5ag1461 379 NCBIfam putative zinc finger domain, LRP1 type 159 201 IPR006510 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1376 Cone-Chr17:9557174 Cone5ag1461 Cone-Chr5:9602763 4.94E-38 dispersed
Cone1ag1497 Cone-Chr1:57140615 Cone5ag1461 Cone-Chr5:9602763 8.21E-38 dispersed
Cone20ag0106 Cone-Chr20:478496 Cone5ag1461 Cone-Chr5:9602763 9.03E-42 dispersed
Cone4ag1946 Cone-Chr4:13719543 Cone5ag1461 Cone-Chr5:9602763 1.11E-39 dispersed
Cone5ag0488 Cone-Chr5:2064670 Cone5ag1461 Cone-Chr5:9602763 1.49E-59 dispersed
Cone5ag1461 Cone-Chr5:9602763 Cone9ag1584 Cone-Chr9:11367151 1.09E-41 dispersed
Cone1ag0468 Cone-Chr1:4439783 Cone5ag1461 Cone-Chr5:9602763 1.77E-198 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46213 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1461 K27807 - vvi:100251674 414.461