Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone5ag1461 | ATGTGGCCGTCTGCTGCTACATCTTCCCGACCGGCCACCGCAATCAACTACGGCCTGGCCCCACCTGAGATGGGCATGGTGGGCCTACGTGATCTCTTCGTTGTTGCTCATCACGGCGGCCAACACGAACCCGCCAATATCATTTCGGACCCTCATTCCATAAATGGGTCTATCCCGGCCACCGCGCTTGGGGTCGGAGTCATTCCGCTGCTTACGGCAACGCCGTGCTTGGCGGCGCCACCGCATGGAATGAGCGGCCACGAGGATCATAATATTAGTAGAGGTGGAATACATTTATGGCAGAATCAACAATTGATATCATCTCATCAGCATGGACATTACTTGAAGAAACAACCCAATACTCTTCATCATCATGATCATCATAATACGAATTCTGGGAATATGGTTCAAGGAGGAGGATCAGGGATTGGCGGTGGTGGGATAGGTGGTTCTTCTTCGTCAGGGTCGACGGCTACTTGTCAAGATTGTGGAAATCAGGCAAAGAAGGATTGTAGTCATAGAAGGTGTAGAACATGTTGTAAGAGTCGAGGGTTCGTTTGTGCGACTCATGTGAAGAGCACGTGGGTTCCGGCTGCCCGTCGGAGGGAGCGGCAACTGATGTCTGCCACGGCAGCACCGCAAGCCGGGTCTTCTGGGTCTACTTCTGGTGCTAAGAAGCCAAGACTAATTGCATCTCGAACCACCACTTCTCCCACTTCTACTTCTAACACCACCCCTAGAAGCTTCGACACTAGCTCTAGCCATCAAGATGGGAGTTTTAAAGAGGCATTGCCGGGACAAGTACGAGCACCGGCAGTTTTCAAGTGCGTTAGAGTAACGGCGGTGGAAGATGGAGAGGATGAGTATGCTTATCAAGCTGTGGTCAAAATTGGTGGTCATGTTTTTAAAGGGTTTTTGTATGATCAAGGTGTTGAAACTAGAGATTCCTTTCCCAACATTTCCGAGTTGCATTTGGGAGGTGGCATCAATATTGGCAATGGTGGTGGCGGCGGCGGTGGAGGAGGAGGCCGAAATGGGGGGTCCTCATCTTCTCCAATTCTTGACCCGAATGAAGTTTTTGGCGCTAGTGGAGGAGGATTGCTTGGAGATACTACTACCTATGGTAATCAAATTAACTAA | 1140 | 50.35 | MWPSAATSSRPATAINYGLAPPEMGMVGLRDLFVVAHHGGQHEPANIISDPHSINGSIPATALGVGVIPLLTATPCLAAPPHGMSGHEDHNISRGGIHLWQNQQLISSHQHGHYLKKQPNTLHHHDHHNTNSGNMVQGGGSGIGGGGIGGSSSSGSTATCQDCGNQAKKDCSHRRCRTCCKSRGFVCATHVKSTWVPAARRRERQLMSATAAPQAGSSGSTSGAKKPRLIASRTTTSPTSTSNTTPRSFDTSSSHQDGSFKEALPGQVRAPAVFKCVRVTAVEDGEDEYAYQAVVKIGGHVFKGFLYDQGVETRDSFPNISELHLGGGINIGNGGGGGGGGGGRNGGSSSSPILDPNEVFGASGGGLLGDTTTYGNQIN | 379 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 9602763 | 9604194 | + | Conep05aG0150700.1 | Cone5ag1461 | 438479 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone5ag1461 | 379 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 86 | 361 | IPR007818 | GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER) | |
Cone5ag1461 | 379 | Pfam | Domain of unknown function (DUF702) | 157 | 312 | - | - | |
Cone5ag1461 | 379 | MobiDBLite | consensus disorder prediction | 205 | 264 | - | - | |
Cone5ag1461 | 379 | NCBIfam | LRP1 C-terminal domain | 264 | 311 | IPR006511 | - | |
Cone5ag1461 | 379 | MobiDBLite | consensus disorder prediction | 119 | 159 | - | - | |
Cone5ag1461 | 379 | MobiDBLite | consensus disorder prediction | 210 | 260 | - | - | |
Cone5ag1461 | 379 | MobiDBLite | consensus disorder prediction | 334 | 366 | - | - | |
Cone5ag1461 | 379 | NCBIfam | putative zinc finger domain, LRP1 type | 159 | 201 | IPR006510 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone17ag1376 | Cone-Chr17:9557174 | Cone5ag1461 | Cone-Chr5:9602763 | 4.94E-38 | dispersed | |
Cone1ag1497 | Cone-Chr1:57140615 | Cone5ag1461 | Cone-Chr5:9602763 | 8.21E-38 | dispersed | |
Cone20ag0106 | Cone-Chr20:478496 | Cone5ag1461 | Cone-Chr5:9602763 | 9.03E-42 | dispersed | |
Cone4ag1946 | Cone-Chr4:13719543 | Cone5ag1461 | Cone-Chr5:9602763 | 1.11E-39 | dispersed | |
Cone5ag0488 | Cone-Chr5:2064670 | Cone5ag1461 | Cone-Chr5:9602763 | 1.49E-59 | dispersed | |
Cone5ag1461 | Cone-Chr5:9602763 | Cone9ag1584 | Cone-Chr9:11367151 | 1.09E-41 | dispersed | |
Cone1ag0468 | Cone-Chr1:4439783 | Cone5ag1461 | Cone-Chr5:9602763 | 1.77E-198 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46213 | None | None | None | None | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone5ag1461 | K27807 | - | vvi:100251674 | 414.461 |