Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1468 ATGAATTCAAACAATTGGCTTTCTTTCCCACTTTCTCCTACACATTCATCATTACCACCCCATCTAGTTGAAACCACTCAAACCCACCAGTTCTCCCTAGGGTTAGTCAGTGATCATATGGACAACCCGTTTCACAATCACGAGTGGAATATGATAAATGCTCAAGGCAATACAGAAGTTCCAAAGGTAGCAGACTTTCTTGGTGTGAGAAAATTAACTGATCATGATCATCGTCAGATCATTCAGTCAGATCTTGTGGGATATAATCACGATCAAATTCAGCCGCCTGCCGCCTACTTATTCCCGAGCAATAGCGATAATGGCCTTGTGGTTTCCGTTAATCAAAATGCTGTCGTGGCTGCAGCAACGGCATCTACTAACTATGATCACTTTCATGAAAATTCGAACAGCTTGCAGTCCTTGACTTTGTCTATGGGTAGTGGAAAGGGTACTGCGGCTACTAACACTACTAACTCAACATGTGAAACCAGTTGTGGTGATAATAATAGCACTACTACTAATAATAATAGTGTTGCAAATGAGGTTGCTCCAAGAAGAACTTTGGACACTTTTGGGCAAAGAACATCAATCTATCGCGGGGTAACAAGGCATAGATGGACAGGAAGGTATGAAGCTCATCTTTGGGATAATAGCTGTAGGAGGGAAGGACAATCTAGGAAGGGTCGTCAAGGTGGGTATGACAAAGAAGAGAAAGCAGCCAGGGCTTATGATCTTGCAGCATTGAAGTACTGGGGAACCTCCACGACTACAAACTTTCCTATAAGCAACTATGAGAAGGAACTGGAGGAAATGAAGCATATGACTAGACAAGAATTTGTGGCCTCCATTAGAAGGAAGAGTAGTGGGTTTTCTAGGGGTGCATCGATGTATCGTGGAGTCACTAGGCATCACCAACATGGAAGATGGCAAGCAAGGATTGGTAGAGTTGCTGGAAATAAAGATCTTTACTTGGGTACTTTTAGTACCGAGGAAGAAGCAGCAGAAGCTTACGACATTGCCGCGATAAAGTTCAGAGGTCTAAATGCCGTGACAAACTTTGACATGAACCGATACGACGTAAAGAGCATATTAGAAAGCAATACTCTTCCAATCGGAGGTGGGGCCGCAAAACGGCTAAAAGAGGCTCAAGCCATTGAATCGTCAAGAAAACGAGAGGAGATGATAGCTTTAGGGTCAAGCTTTCAATATGGTGGTAGCTCAAGCTCTAGTAGGTTACAACAAGCTGCTGTTTATAACCCTAATTTGATTCACCAATCTTTTGACCAGTCCCAGATACCATTATTAACCCTACAACAGAACCAAGACATCTCTCACTACAATACCACTCATCAAGACCCATCTACATTTCATCAAAGTTATATCCAGACACAGCTTCAATTGCACCAGCAATCTGCAAATTCTTACAATTCTCAGTTTTATAACAGCTACTTGCAGAATCACCCGGCTTTGCTTCAAGGTTTTATGATGAATAACGTGGAGAATAGTGGCAATTCTAGTGGGAGTAGTGGAACTAACTATAATGGTGGGTATAGTAATATTGGGCATGGACTTGGTTTAATGGGTCCAAATTCTTCTAGCACTAATGAGGTCACTATGGGATCTTCTGATCATCAACAACAAGAACTTTCAGCCGTTAAAGTTGATTATGATATGCCTTCCGGCGTGACTTATGGCAGTTGGTCAGGAGAGCATTCAGTTCCGGGTTCAAATAGTGGGGTTTTCACAATGTGGAATGACTGA 1761 42.36 MNSNNWLSFPLSPTHSSLPPHLVETTQTHQFSLGLVSDHMDNPFHNHEWNMINAQGNTEVPKVADFLGVRKLTDHDHRQIIQSDLVGYNHDQIQPPAAYLFPSNSDNGLVVSVNQNAVVAAATASTNYDHFHENSNSLQSLTLSMGSGKGTAATNTTNSTCETSCGDNNSTTTNNNSVANEVAPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKELEEMKHMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMNRYDVKSILESNTLPIGGGAAKRLKEAQAIESSRKREEMIALGSSFQYGGSSSSSRLQQAAVYNPNLIHQSFDQSQIPLLTLQQNQDISHYNTTHQDPSTFHQSYIQTQLQLHQQSANSYNSQFYNSYLQNHPALLQGFMMNNVENSGNSSGSSGTNYNGGYSNIGHGLGLMGPNSSSTNEVTMGSSDHQQQELSAVKVDYDMPSGVTYGSWSGEHSVPGSNSGVFTMWND 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9723706 9726607 + Conep05aG0151400.1 Cone5ag1468 438486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1468 586 FunFam AP2-like ethylene-responsive transcription factor 295 356 - -
Cone5ag1468 586 SMART rav1_2 296 360 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag1468 586 SMART rav1_2 197 266 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag1468 586 SUPERFAMILY DNA-binding domain 196 262 IPR016177 GO:0003677(InterPro)
Cone5ag1468 586 ProSiteProfiles AP2/ERF domain profile. 296 354 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag1468 586 Gene3D AP2/ERF domain 197 262 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag1468 586 Gene3D AP2/ERF domain 296 356 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag1468 586 PRINTS Ethylene responsive element binding protein signature 336 356 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag1468 586 PRINTS Ethylene responsive element binding protein signature 198 209 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag1468 586 ProSiteProfiles AP2/ERF domain profile. 197 260 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag1468 586 CDD AP2 295 354 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag1468 586 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 153 451 - -
Cone5ag1468 586 Pfam AP2 domain 297 346 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag1468 586 CDD AP2 196 262 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag1468 586 SUPERFAMILY DNA-binding domain 295 355 IPR016177 GO:0003677(InterPro)
Cone5ag1468 586 FunFam AP2-like ethylene-responsive transcription factor ANT 196 262 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0188 Cone-Chr11:914968 Cone5ag1468 Cone-Chr5:9723706 1.95E-114 dispersed
Cone18ag1297 Cone-Chr18:9057525 Cone5ag1468 Cone-Chr5:9723706 3.49E-110 dispersed
Cone20ag1123 Cone-Chr20:7687688 Cone5ag1468 Cone-Chr5:9723706 2.92E-76 dispersed
Cone5ag1468 Cone-Chr5:9723706 Cone6ag1474 Cone-Chr6:11740377 1.50E-106 dispersed
Cone10ag0582 Cone-Chr10:2729860 Cone5ag1468 Cone-Chr5:9723706 1.65E-120 transposed
Cone1ag0434 Cone-Chr1:3905969 Cone5ag1468 Cone-Chr5:9723706 5.62E-93 transposed
Cone1ag0433 Cone-Chr1:3903900 Cone5ag1468 Cone-Chr5:9723706 6.34E-237 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46215 PF11779 SPT_ssu-like 4.80E-19 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1468 K09285 - vvi:100256966 680.248