Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1478 ATGGATCTCTTACAGTCTCACAGGGCAGAGATGATAAGCATATCTGTTGCTCTCGTTGCCATAGGCGTTGGCACTGCCTACTATTTCTATATCAACAAGAAACCCAAAGGTTGCTTGGACCCTGAGAATTTCAAGAAATTTAAGCTTGTCAAGCGCACCGAACTCAGCCACAATGTGGCAAAGTTTAGATTTTCTCTTCCTACACCGACCTCAATATTGGGGCTTCCTATTGGACAACATATGAGTTGCAAAGGAAAAGATGGTCTTGGTGAAGAAGTTGTCAAACCCTATACCCCTACAACCTTGGATTCAGATGTCGGATACTTTGAATTAGTTATAAAGATGTACCCACAAGGACGAATGTCCCACCACTTCTGTGAGATGCGTGAAGGTGAATACTTGGCTGTTAAAGGACCCAAGGGACGTTTCAAGTATCAACCTAACCAGGTGAAAGTCTTTGGGATGCTCGCTGGTGGCACAGGTATCACTCCCATGTTCCAGGTTGCAAGAGCTATAATGGAAAACCCAATTGACAAGACCAATTTACACCTCATATATGCTAATGTGACTTATGAAGACATTCTTCTTAAGGAAGAATTGGATGGTCTTGCTAGTACCTTTCCCAATCGCTTCGCTGTCTATTATGTCCTCAATAAGCCTCCAGAAGAATGGGATGGTGGTGTCGGGTTCGTAACTAAGGAAATGATTCAAGAACACTGTCCTGCACCGGCCCCTGATATTCAGATTTTAAGGTGTGGACCGCCTCCCATGAACAAGGCCATGGCTGCTCACCTAGAAAACCTGGGATACAGCCCAAAAATGCAGTTCCAGTTTTAA 837 44.21 MDLLQSHRAEMISISVALVAIGVGTAYYFYINKKPKGCLDPENFKKFKLVKRTELSHNVAKFRFSLPTPTSILGLPIGQHMSCKGKDGLGEEVVKPYTPTTLDSDVGYFELVIKMYPQGRMSHHFCEMREGEYLAVKGPKGRFKYQPNQVKVFGMLAGGTGITPMFQVARAIMENPIDKTNLHLIYANVTYEDILLKEELDGLASTFPNRFAVYYVLNKPPEEWDGGVGFVTKEMIQEHCPAPAPDIQILRCGPPPMNKAMAAHLENLGYSPKMQFQF 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9871340 9876951 + Conep05aG0152500.1 Cone5ag1478 438496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1478 278 Gene3D Translation factors 35 134 - -
Cone5ag1478 278 FunFam NADH-cytochrome b5 reductase 37 136 - -
Cone5ag1478 278 Pfam Oxidoreductase NAD-binding domain 155 261 IPR001433 GO:0016491(InterPro)
Cone5ag1478 278 SUPERFAMILY Riboflavin synthase domain-like 35 148 IPR017938 -
Cone5ag1478 278 CDD cyt_b5_reduct_like 47 278 - -
Cone5ag1478 278 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 192 203 IPR001709 GO:0016491(InterPro)
Cone5ag1478 278 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 248 256 IPR001709 GO:0016491(InterPro)
Cone5ag1478 278 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 154 173 IPR001709 GO:0016491(InterPro)
Cone5ag1478 278 PANTHER NADH-CYTOCHROME B5 REDUCTASE 7 278 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Cone5ag1478 278 PRINTS Cytochrome B5 reductase signature 192 203 - -
Cone5ag1478 278 PRINTS Cytochrome B5 reductase signature 73 84 - -
Cone5ag1478 278 PRINTS Cytochrome B5 reductase signature 154 173 - -
Cone5ag1478 278 PRINTS Cytochrome B5 reductase signature 95 102 - -
Cone5ag1478 278 PRINTS Cytochrome B5 reductase signature 131 145 - -
Cone5ag1478 278 PRINTS Cytochrome B5 reductase signature 248 256 - -
Cone5ag1478 278 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 42 146 IPR017927 GO:0016491(InterPro)
Cone5ag1478 278 Gene3D - 135 278 IPR039261 -
Cone5ag1478 278 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 134 273 IPR039261 -
Cone5ag1478 278 FunFam NADH-cytochrome b5 reductase 136 278 - -
Cone5ag1478 278 Pfam Oxidoreductase FAD-binding domain 47 145 IPR008333 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0494 Cone-Chr10:2284887 Cone5ag1478 Cone-Chr5:9871340 7.64E-157 dispersed
Cone2ag0256 Cone-Chr2:1314939 Cone5ag1478 Cone-Chr5:9871340 2.05E-64 dispersed
Cone3ag0519 Cone-Chr3:2561974 Cone5ag1478 Cone-Chr5:9871340 2.67E-157 dispersed
Cone1ag0382 Cone-Chr1:3268924 Cone5ag1478 Cone-Chr5:9871340 9.91E-198 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1478 K00326 - rcu:8289547 499.975