Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1478 ATGGATCTCTTACAGTCTCACAGGGCAGAGATGATAAGCATATCTGTTGCTCTCGTTGCCATAGGCGTTGGCACTGCCTACTATTTCTATATCAACAAGAAACCCAAAGGTTGCTTGGACCCTGAGAATTTCAAGAAATTTAAGCTTGTCAAGCGCACCGAACTCAGCCACAATGTGGCAAAGTTTAGATTTTCTCTTCCTACACCGACCTCAATATTGGGGCTTCCTATTGGACAACATATGAGTTGCAAAGGAAAAGATGGTCTTGGTGAAGAAGTTGTCAAACCCTATACCCCTACAACCTTGGATTCAGATGTCGGATACTTTGAATTAGTTATAAAGATGTACCCACAAGGACGAATGTCCCACCACTTCTGTGAGATGCGTGAAGGTGAATACTTGGCTGTTAAAGGACCCAAGGGACGTTTCAAGTATCAACCTAACCAGGTGAAAGTCTTTGGGATGCTCGCTGGTGGCACAGGTATCACTCCCATGTTCCAGGTTGCAAGAGCTATAATGGAAAACCCAATTGACAAGACCAATTTACACCTCATATATGCTAATGTGACTTATGAAGACATTCTTCTTAAGGAAGAATTGGATGGTCTTGCTAGTACCTTTCCCAATCGCTTCGCTGTCTATTATGTCCTCAATAAGCCTCCAGAAGAATGGGATGGTGGTGTCGGGTTCGTAACTAAGGAAATGATTCAAGAACACTGTCCTGCACCGGCCCCTGATATTCAGATTTTAAGGTGTGGACCGCCTCCCATGAACAAGGCCATGGCTGCTCACCTAGAAAACCTGGGATACAGCCCAAAAATGCAGTTCCAGTTTTAA 837 44.21 MDLLQSHRAEMISISVALVAIGVGTAYYFYINKKPKGCLDPENFKKFKLVKRTELSHNVAKFRFSLPTPTSILGLPIGQHMSCKGKDGLGEEVVKPYTPTTLDSDVGYFELVIKMYPQGRMSHHFCEMREGEYLAVKGPKGRFKYQPNQVKVFGMLAGGTGITPMFQVARAIMENPIDKTNLHLIYANVTYEDILLKEELDGLASTFPNRFAVYYVLNKPPEEWDGGVGFVTKEMIQEHCPAPAPDIQILRCGPPPMNKAMAAHLENLGYSPKMQFQF 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9871340 9876951 + Conep05aG0152500.1 Cone5ag1478 438496

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1478 278 Gene3D Translation factors 35 134 - -
Cone5ag1478 278 FunFam NADH-cytochrome b5 reductase 37 136 - -
Cone5ag1478 278 Pfam Oxidoreductase NAD-binding domain 155 261 IPR001433 GO:0016491(InterPro)
Cone5ag1478 278 SUPERFAMILY Riboflavin synthase domain-like 35 148 IPR017938 -
Cone5ag1478 278 CDD cyt_b5_reduct_like 47 278 - -
Cone5ag1478 278 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 192 203 IPR001709 GO:0016491(InterPro)
Cone5ag1478 278 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 248 256 IPR001709 GO:0016491(InterPro)
Cone5ag1478 278 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 154 173 IPR001709 GO:0016491(InterPro)
Cone5ag1478 278 PANTHER NADH-CYTOCHROME B5 REDUCTASE 7 278 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Cone5ag1478 278 PRINTS Cytochrome B5 reductase signature 192 203 - -
Cone5ag1478 278 PRINTS Cytochrome B5 reductase signature 73 84 - -
Cone5ag1478 278 PRINTS Cytochrome B5 reductase signature 154 173 - -
Cone5ag1478 278 PRINTS Cytochrome B5 reductase signature 95 102 - -
Cone5ag1478 278 PRINTS Cytochrome B5 reductase signature 131 145 - -
Cone5ag1478 278 PRINTS Cytochrome B5 reductase signature 248 256 - -
Cone5ag1478 278 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 42 146 IPR017927 GO:0016491(InterPro)
Cone5ag1478 278 Gene3D - 135 278 IPR039261 -
Cone5ag1478 278 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 134 273 IPR039261 -
Cone5ag1478 278 FunFam NADH-cytochrome b5 reductase 136 278 - -
Cone5ag1478 278 Pfam Oxidoreductase FAD-binding domain 47 145 IPR008333 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1478 K00326 - - rcu:8289547 499.975
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0494 Cone-Chr10:2284887 Cone5ag1478 Cone-Chr5:9871340 7.64E-157 dispersed
Cone2ag0256 Cone-Chr2:1314939 Cone5ag1478 Cone-Chr5:9871340 2.05E-64 dispersed
Cone3ag0519 Cone-Chr3:2561974 Cone5ag1478 Cone-Chr5:9871340 2.67E-157 dispersed
Cone1ag0382 Cone-Chr1:3268924 Cone5ag1478 Cone-Chr5:9871340 9.91E-198 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone1ag1008 . 1 134 NADPH P450 reductases AT5G53560 73.1 1.1e-54 209.9
Cone5ag0716 . 1 168 NADPH P450 reductases AT5G53560 58.3 2.4e-49 192.2
Cone7ag0386 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.1e-46 183.3
Cone4ag0397 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.9e-46 182.6
Cone14ag0449 . 1 133 NADPH P450 reductases AT5G53560 56.7 1.4e-41 166.4
Cone15ag0479 . 1 133 NADPH P450 reductases AT5G53560 52.2 1.6e-37 152.9
Cone4ag0397 . 1 133 NADPH P450 reductases AT5G48810 65.2 7.4e-49 190.7
Cone7ag0386 . 1 133 NADPH P450 reductases AT5G48810 65.2 1.3e-48 189.9
Cone1ag1008 . 1 135 NADPH P450 reductases AT5G48810 62.0 5.0e-45 177.9
Cone18ag0994 . 1 135 NADPH P450 reductases AT5G48810 55.9 6.3e-40 161.0
Cone14ag0449 . 1 133 NADPH P450 reductases AT5G48810 53.7 2.4e-39 159.1
Cone7ag0386 . 22 133 NADPH P450 reductases AT2G32720 80.4 1.6e-48 189.5
Cone4ag0397 . 22 133 NADPH P450 reductases AT2G32720 79.5 4.6e-48 188.0
Cone1ag1008 . 22 133 NADPH P450 reductases AT2G32720 63.4 2.8e-37 152.1
Cone4ag0958 . 1 117 NADPH P450 reductases AT1G60660 60.0 4.3e-37 151.4
Cone9ag0531 . 1 130 NADPH P450 reductases AT1G26340 59.7 5.5e-41 164.5
Cone3ag0519 . 2 281 NADPH P450 reductases AT5G17770 80.4 9.1e-131 463.8
Cone10ag0494 . 3 281 NADPH P450 reductases AT5G17770 81.0 2.2e-129 459.1
Cone5ag1478 . 8 278 NADPH P450 reductases AT5G17770 76.4 8.2e-124 440.7
Cone1ag0382 . 8 278 NADPH P450 reductases AT5G17770 77.1 5.3e-123 438.0
Cone1ag1008 . 1 134 NADPH P450 reductases AT5G53560 73.1 1.1e-54 209.9
Cone5ag0716 . 1 168 NADPH P450 reductases AT5G53560 58.3 2.4e-49 192.2
Cone7ag0386 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.1e-46 183.3
Cone4ag0397 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.9e-46 182.6
Cone14ag0449 . 1 133 NADPH P450 reductases AT5G53560 56.7 1.4e-41 166.4
Cone15ag0479 . 1 133 NADPH P450 reductases AT5G53560 52.2 1.6e-37 152.9
Cone4ag0397 . 1 133 NADPH P450 reductases AT5G48810 65.2 7.4e-49 190.7
Cone7ag0386 . 1 133 NADPH P450 reductases AT5G48810 65.2 1.3e-48 189.9
Cone1ag1008 . 1 135 NADPH P450 reductases AT5G48810 62.0 5.0e-45 177.9
Cone18ag0994 . 1 135 NADPH P450 reductases AT5G48810 55.9 6.3e-40 161.0
Cone14ag0449 . 1 133 NADPH P450 reductases AT5G48810 53.7 2.4e-39 159.1
Cone7ag0386 . 22 133 NADPH P450 reductases AT2G32720 80.4 1.6e-48 189.5
Cone4ag0397 . 22 133 NADPH P450 reductases AT2G32720 79.5 4.6e-48 188.0
Cone1ag1008 . 22 133 NADPH P450 reductases AT2G32720 63.4 2.8e-37 152.1
Cone4ag0958 . 1 117 NADPH P450 reductases AT1G60660 60.0 4.3e-37 151.4
Cone9ag0531 . 1 130 NADPH P450 reductases AT1G26340 59.7 5.5e-41 164.5
Cone3ag0519 . 2 281 NADPH P450 reductases AT5G17770 80.4 9.1e-131 463.8
Cone10ag0494 . 3 281 NADPH P450 reductases AT5G17770 81.0 2.2e-129 459.1
Cone5ag1478 . 8 278 NADPH P450 reductases AT5G17770 76.4 8.2e-124 440.7
Cone1ag0382 . 8 278 NADPH P450 reductases AT5G17770 77.1 5.3e-123 438.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86